Wall clock time and date at job start Wed Apr 1 2020 02:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99720 * 2 1 4 4 C 1.53007 * 109.46810 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47073 * 64.99889 * 4 3 2 6 6 C 1.46504 * 120.00034 * 274.99635 * 5 4 3 7 7 C 1.50693 * 109.47213 * 275.00235 * 6 5 4 8 8 H 1.08006 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99895 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00012 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00146 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47446 * 89.99770 * 11 9 7 13 13 H 1.48500 * 109.47123 * 210.00222 * 11 9 7 14 14 H 1.48509 * 109.46886 * 329.99673 * 11 9 7 15 15 S 1.65600 * 120.00239 * 94.99896 * 5 4 3 16 16 O 1.42106 * 106.40158 * 336.46132 * 15 5 4 17 17 O 1.42100 * 106.40521 * 203.53711 * 15 5 4 18 18 C 1.76200 * 107.21679 * 89.99930 * 15 5 4 19 19 C 1.34850 * 126.65923 * 90.02924 * 18 15 5 20 20 N 1.34294 * 108.07579 * 179.97438 * 19 18 15 21 21 C 1.30089 * 109.20671 * 359.96543 * 20 19 18 22 22 N 1.35415 * 108.63233 * 0.07380 * 21 20 19 23 23 C 1.46477 * 124.82204 * 179.88115 * 22 21 20 24 24 C 1.53267 * 108.79354 * 342.88640 * 23 22 21 25 25 C 1.53143 * 109.49550 * 50.37769 * 24 23 22 26 26 C 1.51047 * 127.38540 * 180.09348 * 21 20 19 27 27 H 1.08999 * 109.47273 * 300.00052 * 1 2 3 28 28 H 1.09006 * 109.47268 * 60.00360 * 1 2 3 29 29 H 1.08995 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47623 * 59.99756 * 3 2 1 31 31 H 1.08999 * 109.47278 * 299.99205 * 3 2 1 32 32 H 1.08998 * 109.47077 * 304.99787 * 4 3 2 33 33 H 1.08999 * 109.46880 * 184.99599 * 4 3 2 34 34 H 1.09004 * 109.46749 * 35.00605 * 6 5 4 35 35 H 1.09002 * 109.46797 * 154.99935 * 6 5 4 36 36 H 0.97001 * 120.00346 * 179.97438 * 10 9 7 37 37 H 1.08004 * 125.96232 * 0.20868 * 19 18 15 38 38 H 1.09003 * 109.58153 * 223.09747 * 23 22 21 39 39 H 1.08998 * 109.58406 * 102.68409 * 23 22 21 40 40 H 1.09001 * 109.47051 * 290.36483 * 24 23 22 41 41 H 1.09001 * 109.46443 * 170.38216 * 24 23 22 42 42 H 1.09004 * 109.50913 * 170.57849 * 25 24 23 43 43 H 1.09002 * 109.54950 * 50.46213 * 25 24 23 44 44 H 1.09010 * 109.71530 * 283.70994 * 26 21 20 45 45 H 1.09002 * 109.71790 * 44.30513 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0015 -0.8955 -1.3757 7 6 5.3000 -1.4248 -0.8238 8 1 6.0336 -0.7423 -0.4207 9 6 5.5515 -2.7804 -0.8334 10 7 6.6849 -3.2424 -0.3522 11 14 4.2830 -3.9608 -1.5311 12 1 4.5333 -4.1559 -2.9818 13 1 4.3843 -5.2667 -0.8313 14 1 2.9226 -3.3983 -1.3348 15 16 4.4473 1.5120 -2.5244 16 8 3.8196 2.7734 -2.3392 17 8 4.2787 0.7243 -3.6950 18 6 6.1793 1.7888 -2.3563 19 6 7.1694 1.0288 -2.8667 20 7 8.3420 1.5798 -2.5135 21 6 8.1170 2.6487 -1.8070 22 7 6.7784 2.8130 -1.6853 23 6 6.1329 3.9066 -0.9552 24 6 7.1635 4.5548 -0.0242 25 6 8.4315 4.8855 -0.8167 26 6 9.1405 3.5813 -1.2033 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5686 0.8427 33 1 3.9784 2.1766 0.0901 34 1 3.1684 -1.3222 -0.8170 35 1 3.9137 -1.1718 -2.4264 36 1 6.8618 -4.1961 -0.3586 37 1 7.0416 0.1351 -3.4597 38 1 5.3045 3.5135 -0.3659 39 1 5.7614 4.6485 -1.6621 40 1 7.4091 3.8644 0.7827 41 1 6.7482 5.4710 0.3955 42 1 9.0964 5.4931 -0.2028 43 1 8.1647 5.4359 -1.7189 44 1 9.5772 3.1231 -0.3158 45 1 9.9234 3.7897 -1.9325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906922550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:52 Heat of formation + Delta-G solvation = -82.392140 kcal Electronic energy + Delta-G solvation = -30153.422566 eV Core-core repulsion = 26105.236809 eV Total energy + Delta-G solvation = -4048.185757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.43277 -39.14399 -38.52794 -37.52808 -37.13015 -37.03077 -34.57007 -34.37004 -31.42250 -30.96042 -29.75941 -28.89685 -27.00508 -25.42998 -24.32866 -23.58604 -23.22179 -22.97610 -20.42310 -19.80157 -19.13451 -18.91875 -18.47230 -17.49485 -17.17260 -16.95821 -16.83387 -16.41519 -16.30605 -15.76792 -15.53154 -15.47098 -15.29542 -15.14557 -14.80854 -14.49502 -14.11409 -13.93458 -13.79191 -13.50208 -13.45666 -13.32261 -13.07690 -13.02619 -12.95931 -12.74300 -12.51902 -12.24792 -12.09410 -12.02613 -11.99146 -11.90077 -11.83149 -11.65902 -11.22359 -10.77289 -10.74781 -10.52401 -9.95447 -9.72159 -8.26273 -6.30105 -0.71394 0.38904 1.37936 1.40463 1.50504 1.59564 1.80001 2.00949 2.37198 2.58700 2.93126 3.09552 3.18328 3.26114 3.52122 3.68899 3.70687 3.85283 4.10228 4.14975 4.25312 4.29656 4.33338 4.44668 4.46575 4.47855 4.57682 4.61832 4.73680 4.78972 4.81156 4.89460 4.91864 4.94889 5.05065 5.07804 5.13178 5.26494 5.35285 5.42137 5.49007 5.69147 6.04700 6.30451 6.37091 6.73666 6.76750 7.33614 8.89457 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.005466 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.969097 B = 5121.688405 C = 6573.744455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.411 6.411 3 C 0.044 3.956 4 C 0.122 3.878 5 N -0.970 5.970 6 C 0.226 3.774 7 C -0.531 4.531 8 H 0.042 0.958 9 C 0.021 3.979 10 N -0.940 5.940 11 Si 0.923 3.077 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.239 1.239 15 S 2.728 3.272 16 O -0.962 6.962 17 O -0.980 6.980 18 C -0.598 4.598 19 C 0.089 3.911 20 N -0.534 5.534 21 C 0.245 3.755 22 N -0.405 5.405 23 C 0.074 3.926 24 C -0.131 4.131 25 C -0.119 4.119 26 C -0.041 4.041 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.265 0.735 37 H 0.167 0.833 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 19.617 3.944 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.330 6.330 3 C -0.034 4.034 4 C -0.003 4.003 5 N -0.808 5.808 6 C 0.102 3.898 7 C -0.570 4.570 8 H 0.060 0.940 9 C -0.178 4.178 10 N -0.580 5.580 11 Si 0.746 3.254 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.162 1.162 15 S 2.815 3.185 16 O -0.952 6.952 17 O -0.970 6.970 18 C -0.795 4.795 19 C -0.067 4.067 20 N -0.254 5.254 21 C -0.021 4.021 22 N -0.086 5.086 23 C -0.046 4.046 24 C -0.169 4.169 25 C -0.156 4.156 26 C -0.079 4.079 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.184 0.816 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.879 19.470 3.228 20.330 hybrid contribution -0.336 -1.262 -0.097 1.309 sum -5.215 18.208 3.131 19.197 Atomic orbital electron populations 1.22918 0.80087 1.03375 1.00906 1.87992 1.21038 1.28445 1.95545 1.23148 0.93202 0.84985 1.02063 1.21531 0.93467 0.98630 0.86685 1.57077 1.77918 1.16863 1.28902 1.19406 0.97112 0.75949 0.97372 1.21580 1.02351 0.92695 1.40383 0.93987 1.25637 0.96993 1.00022 0.95132 1.70044 1.25704 1.14443 1.47852 0.86068 0.81497 0.78790 0.79002 1.19651 1.20528 1.16198 1.00870 0.72014 0.72592 0.73058 1.93492 1.73798 1.41495 1.86455 1.93524 1.85328 1.70840 1.47271 1.33547 1.24935 1.02869 1.18119 1.22348 0.87614 0.98304 0.98419 1.70091 1.27754 1.09737 1.17789 1.24798 0.84699 0.95388 0.97195 1.45201 1.06470 1.19475 1.37484 1.22788 0.97838 0.87495 0.96455 1.22038 0.94700 1.03012 0.97122 1.21743 0.96897 0.95283 1.01706 1.20670 0.93591 0.92272 1.01411 0.92161 0.93675 0.89488 0.88947 0.92885 0.89751 0.87507 0.91780 0.95007 0.92566 0.81586 0.88525 0.87412 0.90726 0.85102 0.86149 0.90563 0.87857 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -12.99 9.02 -148.98 -1.34 -14.33 16 3 C 0.04 1.19 6.28 71.98 0.45 1.64 16 4 C 0.12 3.83 5.79 86.38 0.50 4.33 16 5 N -0.97 -38.89 2.75 -519.84 -1.43 -40.32 16 6 C 0.23 10.85 4.34 85.63 0.37 11.22 16 7 C -0.53 -29.93 9.94 25.60 0.25 -29.68 16 8 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 9 C 0.02 1.22 5.47 84.65 0.46 1.68 16 10 N -0.94 -58.87 13.96 21.45 0.30 -58.58 16 11 Si 0.92 44.47 27.47 68.60 1.88 46.36 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 15 S 2.73 108.23 5.75 -56.49 -0.33 107.91 16 16 O -0.96 -33.87 15.49 -128.00 -1.98 -35.85 16 17 O -0.98 -45.43 16.42 -128.00 -2.10 -47.53 16 18 C -0.60 -24.06 7.04 83.22 0.59 -23.48 16 19 C 0.09 4.01 11.65 83.54 0.97 4.99 16 20 N -0.53 -22.64 11.24 -187.51 -2.11 -24.75 16 21 C 0.24 8.14 7.65 138.24 1.06 9.20 16 22 N -0.41 -13.24 3.13 -510.75 -1.60 -14.84 16 23 C 0.07 1.63 5.79 86.47 0.50 2.13 16 24 C -0.13 -1.76 5.94 30.73 0.18 -1.58 16 25 C -0.12 -1.45 5.96 30.77 0.18 -1.26 16 26 C -0.04 -0.82 6.33 30.09 0.19 -0.63 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 33 H 0.11 2.64 5.87 -2.39 -0.01 2.63 16 34 H 0.06 3.03 5.66 -2.38 -0.01 3.02 16 35 H 0.03 1.60 6.34 -2.39 -0.02 1.58 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.17 7.77 8.06 -2.91 -0.02 7.75 16 38 H 0.10 2.04 6.07 -2.39 -0.01 2.02 16 39 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 41 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -81.83 373.31 -0.81 -82.64 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.94 Total: 18.96 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 6.96 Total: -19.66 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -4.84 Total: -138.49 kcal Atomic # 8 Polarization: -92.28 SS G_CDS: -5.43 Total: -97.71 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Atomic # 16 Polarization: 108.23 SS G_CDS: -0.33 Total: 107.91 kcal Total: -81.83 -0.81 -82.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906922550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.246 kcal (2) G-P(sol) polarization free energy of solvation -81.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds