Wall clock time and date at job start Wed Apr 1 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42909 * 113.99734 * 2 1 4 4 C 1.53002 * 109.46581 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47244 * 65.00298 * 4 3 2 6 6 C 1.46508 * 119.99918 * 274.99673 * 5 4 3 7 7 C 1.50694 * 109.46853 * 274.99956 * 6 5 4 8 8 H 1.07997 * 120.00670 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99574 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00167 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99744 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46815 * 90.00119 * 11 9 7 13 13 H 1.48496 * 109.47468 * 209.99809 * 11 9 7 14 14 H 1.48499 * 109.47452 * 330.00476 * 11 9 7 15 15 S 1.65602 * 120.00125 * 94.99428 * 5 4 3 16 16 O 1.42096 * 106.40242 * 336.46385 * 15 5 4 17 17 O 1.42099 * 106.40310 * 203.53707 * 15 5 4 18 18 N 1.65606 * 107.21332 * 90.00156 * 15 5 4 19 19 C 1.47056 * 120.98116 * 90.00457 * 18 15 5 20 20 C 1.53226 * 109.29169 * 115.91909 * 19 18 15 21 21 N 1.46709 * 109.23091 * 46.32045 * 20 19 18 22 22 C 1.36096 * 126.92872 * 161.27883 * 21 20 19 23 23 C 1.34960 * 108.26883 * 179.55680 * 22 21 20 24 24 C 1.41058 * 107.46305 * 0.12438 * 23 22 21 25 25 C 1.34209 * 107.28804 * 0.08909 * 24 23 22 26 26 C 1.47474 * 120.98245 * 270.01889 * 18 15 5 27 27 H 1.08998 * 109.47050 * 59.99463 * 1 2 3 28 28 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47084 * 300.00327 * 1 2 3 30 30 H 1.08994 * 109.47001 * 60.00200 * 3 2 1 31 31 H 1.08996 * 109.47381 * 300.00233 * 3 2 1 32 32 H 1.08998 * 109.47147 * 304.99775 * 4 3 2 33 33 H 1.08998 * 109.46596 * 185.00154 * 4 3 2 34 34 H 1.08993 * 109.47073 * 35.00131 * 6 5 4 35 35 H 1.09001 * 109.46747 * 155.00452 * 6 5 4 36 36 H 0.97005 * 120.00162 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.50200 * 355.97338 * 19 18 15 38 38 H 1.09006 * 109.49402 * 235.86012 * 19 18 15 39 39 H 1.09005 * 109.50929 * 166.24409 * 20 19 18 40 40 H 1.08991 * 109.50762 * 286.34120 * 20 19 18 41 41 H 1.08001 * 125.86191 * 359.53785 * 22 21 20 42 42 H 1.07992 * 126.26796 * 180.15039 * 23 22 21 43 43 H 1.08005 * 126.35229 * 180.09042 * 24 23 22 44 44 H 1.09001 * 109.95557 * 103.81668 * 26 18 15 45 45 H 1.09001 * 110.02259 * 342.58856 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8950 -1.3782 7 6 5.2993 -1.4245 -0.8276 8 1 6.0333 -0.7423 -0.4249 9 6 5.5508 -2.7801 -0.8380 10 7 4.6573 -3.6109 -1.3288 11 14 7.1613 -3.4365 -0.1561 12 1 7.0035 -3.7286 1.2914 13 1 7.5322 -4.6820 -0.8747 14 1 8.2284 -2.4209 -0.3426 15 16 4.4453 1.5131 -2.5263 16 8 3.8177 2.7743 -2.3401 17 8 4.2757 0.7258 -3.6970 18 7 6.0733 1.7732 -2.3695 19 6 7.0484 0.8589 -2.9824 20 6 7.8472 1.6127 -4.0508 21 7 8.2794 2.9056 -3.5084 22 6 9.2778 3.6991 -3.9835 23 6 9.3473 4.8015 -3.2082 24 6 8.3544 4.6826 -2.2133 25 6 7.7220 3.5168 -2.4183 26 6 6.5879 2.9284 -1.6109 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.1678 -1.3218 -0.8191 35 1 3.9119 -1.1708 -2.4290 36 1 4.8344 -4.5647 -1.3364 37 1 6.5231 0.0225 -3.4435 38 1 7.7278 0.4849 -2.2164 39 1 8.7213 1.0260 -4.3333 40 1 7.2197 1.7760 -4.9268 41 1 9.9066 3.4833 -4.8347 42 1 10.0366 5.6242 -3.3277 43 1 8.1425 5.3973 -1.4317 44 1 6.9547 2.6011 -0.6381 45 1 5.8000 3.6703 -1.4807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921514892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:56 Heat of formation + Delta-G solvation = -76.267331 kcal Electronic energy + Delta-G solvation = -29930.239627 eV Core-core repulsion = 25882.319462 eV Total energy + Delta-G solvation = -4047.920166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.28833 -39.07923 -38.44113 -37.61159 -36.99241 -36.91580 -34.52891 -34.02177 -31.06966 -30.76308 -29.27637 -28.45523 -26.99461 -26.05950 -24.61827 -24.03987 -23.28414 -21.54678 -20.31101 -19.45546 -18.80784 -18.52715 -18.32467 -18.05465 -17.31118 -17.09312 -16.84868 -16.53471 -16.37142 -15.84152 -15.67289 -15.09136 -14.83772 -14.66696 -14.52525 -14.47392 -13.97571 -13.83456 -13.56727 -13.46945 -13.38063 -13.27332 -13.07218 -13.02791 -12.95363 -12.93758 -12.72501 -12.61263 -12.52531 -12.30251 -12.19916 -11.98473 -11.84532 -11.62870 -10.57775 -10.49815 -10.32109 -9.72975 -9.46674 -8.88662 -8.10409 -6.23532 -0.44237 1.35644 1.44666 1.45970 1.54995 1.74497 2.13330 2.15722 2.44311 2.48513 2.97983 3.20967 3.24991 3.51776 3.62790 3.96853 3.99894 4.12040 4.17750 4.25072 4.33869 4.39380 4.47800 4.49443 4.54858 4.56909 4.59089 4.76112 4.76498 4.79153 4.82331 4.86215 4.91863 5.06179 5.28154 5.41763 5.46948 5.49091 5.66086 5.80098 5.97134 6.17649 6.18637 6.32471 6.38880 6.52333 6.89446 7.45753 8.97763 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009939 B = 0.005182 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.530646 B = 5402.489966 C = 7296.057826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.040 3.960 4 C 0.125 3.875 5 N -0.987 5.987 6 C 0.266 3.734 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.013 3.987 10 N -0.928 5.928 11 Si 0.955 3.045 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.258 1.258 15 S 2.796 3.204 16 O -0.998 6.998 17 O -1.010 7.010 18 N -1.007 6.007 19 C 0.115 3.885 20 C 0.091 3.909 21 N -0.450 5.450 22 C -0.016 4.016 23 C -0.217 4.217 24 C -0.200 4.200 25 C -0.015 4.015 26 C 0.187 3.813 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.033 0.967 35 H 0.009 0.991 36 H 0.263 0.737 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.187 0.813 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.100 0.900 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 13.795 0.734 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C -0.038 4.038 4 C -0.001 4.001 5 N -0.827 5.827 6 C 0.142 3.858 7 C -0.574 4.574 8 H 0.090 0.910 9 C -0.186 4.186 10 N -0.568 5.568 11 Si 0.781 3.219 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.182 1.182 15 S 2.806 3.194 16 O -0.982 6.982 17 O -0.995 6.995 18 N -0.846 5.846 19 C -0.011 4.011 20 C -0.032 4.032 21 N -0.126 5.126 22 C -0.146 4.146 23 C -0.241 4.241 24 C -0.225 4.225 25 C -0.128 4.128 26 C 0.061 3.939 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.051 0.949 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.204 0.796 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.118 0.882 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.123 13.413 -0.151 14.033 hybrid contribution 0.425 -0.872 0.374 1.040 sum 4.548 12.541 0.224 13.342 Atomic orbital electron populations 1.22884 0.80451 1.03160 1.00666 1.88050 1.20773 1.28470 1.95461 1.23192 0.94598 0.84761 1.01250 1.21416 0.92513 0.98882 0.87246 1.57562 1.78897 1.17714 1.28525 1.18741 0.97205 0.73765 0.96063 1.21823 1.03013 0.92327 1.40251 0.91000 1.25754 0.99922 0.97335 0.95631 1.70088 1.36564 1.03402 1.46755 0.85603 0.80175 0.77955 0.78175 1.20481 1.21513 1.18182 1.01312 0.72877 0.71958 0.73224 1.93511 1.74730 1.42827 1.87113 1.93520 1.85693 1.71775 1.48485 1.58170 1.24099 1.35598 1.66732 1.21598 0.92017 0.91572 0.95921 1.22409 1.01112 0.82834 0.96811 1.44243 1.27504 1.17178 1.23721 1.22267 0.95573 0.93252 1.03472 1.21196 1.03667 1.00317 0.98921 1.20747 1.00596 0.97455 1.03659 1.20655 1.01468 0.96502 0.94149 1.20369 0.94017 0.85877 0.93588 0.94147 0.89711 0.92037 0.89367 0.94122 0.89464 0.87122 0.94934 0.97290 0.92818 0.88507 0.89484 0.85508 0.90055 0.79633 0.82859 0.83140 0.88228 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.91 9.02 -148.98 -1.34 -16.25 16 3 C 0.04 1.24 6.28 71.98 0.45 1.70 16 4 C 0.13 4.09 5.79 86.38 0.50 4.59 16 5 N -0.99 -39.90 2.81 -519.86 -1.46 -41.36 16 6 C 0.27 13.38 5.27 85.63 0.45 13.83 16 7 C -0.53 -27.16 9.38 25.60 0.24 -26.92 16 8 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.01 0.68 5.46 84.66 0.46 1.14 16 10 N -0.93 -53.58 13.29 21.45 0.28 -53.29 16 11 Si 0.96 41.25 29.54 68.60 2.03 43.27 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 15 S 2.80 109.23 6.11 -56.49 -0.34 108.89 16 16 O -1.00 -38.52 15.75 -128.00 -2.02 -40.54 16 17 O -1.01 -47.13 15.41 -128.00 -1.97 -49.10 16 18 N -1.01 -32.67 3.35 -515.00 -1.72 -34.40 16 19 C 0.11 3.54 6.36 86.35 0.55 4.09 16 20 C 0.09 2.26 7.12 86.42 0.62 2.88 16 21 N -0.45 -11.75 3.15 -508.78 -1.60 -13.35 16 22 C -0.02 -0.35 11.49 83.28 0.96 0.60 16 23 C -0.22 -4.87 10.87 22.21 0.24 -4.63 16 24 C -0.20 -4.91 10.81 22.04 0.24 -4.67 16 25 C -0.01 -0.41 6.67 41.00 0.27 -0.13 16 26 C 0.19 5.03 6.87 85.59 0.59 5.62 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 33 H 0.11 2.84 7.61 -2.39 -0.02 2.82 16 34 H 0.03 1.80 6.60 -2.39 -0.02 1.78 16 35 H 0.01 0.52 6.91 -2.39 -0.02 0.50 16 36 H 0.26 14.42 8.31 -92.70 -0.77 13.64 16 37 H 0.10 3.41 7.10 -2.39 -0.02 3.39 16 38 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 43 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 44 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.11 2.84 6.99 -2.39 -0.02 2.82 16 Total: -1.00 -71.56 380.03 -0.36 -71.92 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.98 Total: 24.20 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 6.82 Total: 0.02 kcal Atomic # 7 Polarization: -137.90 SS G_CDS: -4.50 Total: -142.41 kcal Atomic # 8 Polarization: -100.56 SS G_CDS: -5.33 Total: -105.89 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 109.23 SS G_CDS: -0.34 Total: 108.89 kcal Total: -71.56 -0.36 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921514892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.346 kcal (2) G-P(sol) polarization free energy of solvation -71.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds