Wall clock time and date at job start Wed Apr 1 2020 02:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99899 * 2 1 4 4 O 1.20833 * 119.99857 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00001 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47155 * 180.02562 * 5 3 2 7 7 N 1.46897 * 109.47152 * 179.20772 * 6 5 3 8 8 C 1.46903 * 110.99882 * 287.60608 * 7 6 5 9 9 C 1.50703 * 109.47032 * 160.50752 * 8 7 6 10 10 C 1.38256 * 119.96432 * 275.63977 * 9 8 7 11 11 C 1.38216 * 120.07016 * 179.76775 * 10 9 8 12 12 C 1.38415 * 119.99731 * 0.50323 * 11 10 9 13 13 F 1.35106 * 120.03538 * 179.72252 * 12 11 10 14 14 C 1.38650 * 119.92964 * 359.75049 * 12 11 10 15 15 F 1.35101 * 120.03250 * 179.97438 * 14 12 11 16 16 C 1.38211 * 119.96260 * 95.91254 * 9 8 7 17 17 C 1.46895 * 111.00205 * 163.65020 * 7 6 5 18 18 C 1.53003 * 109.47175 * 293.95516 * 17 7 6 19 19 H 1.08999 * 109.46975 * 59.99830 * 18 17 7 20 20 O 1.42904 * 109.47192 * 299.99857 * 18 17 7 21 21 C 1.50699 * 109.47177 * 179.97438 * 18 17 7 22 22 H 1.07995 * 120.00028 * 0.02562 * 21 18 17 23 23 C 1.37877 * 119.99662 * 180.02562 * 21 18 17 24 24 N 1.31517 * 120.00003 * 180.02562 * 23 21 18 25 25 Si 1.86803 * 120.00361 * 359.97438 * 23 21 18 26 26 H 1.48491 * 109.47177 * 270.00190 * 25 23 21 27 27 H 1.48500 * 109.46831 * 30.00522 * 25 23 21 28 28 H 1.48503 * 109.46850 * 149.99860 * 25 23 21 29 29 H 1.09004 * 109.47315 * 299.99804 * 1 2 3 30 30 H 1.09008 * 109.47158 * 60.00023 * 1 2 3 31 31 H 1.08997 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47122 * 59.99668 * 5 3 2 33 33 H 1.09008 * 109.47123 * 299.99910 * 5 3 2 34 34 H 1.08997 * 109.47099 * 59.20475 * 6 5 3 35 35 H 1.09002 * 109.46905 * 299.20457 * 6 5 3 36 36 H 1.09001 * 109.47075 * 280.50322 * 8 7 6 37 37 H 1.08990 * 109.47400 * 40.50727 * 8 7 6 38 38 H 1.07996 * 119.96311 * 0.02562 * 10 9 8 39 39 H 1.07997 * 119.99876 * 180.25464 * 11 10 9 40 40 H 1.08000 * 120.00792 * 359.95941 * 16 9 8 41 41 H 1.08999 * 109.47308 * 173.95550 * 17 7 6 42 42 H 1.08998 * 109.47336 * 53.95151 * 17 7 6 43 43 H 0.96694 * 113.99742 * 299.99880 * 20 18 17 44 44 H 0.96998 * 120.00592 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 7 5.4669 2.8191 0.0188 8 6 5.9975 2.4367 1.3342 9 6 7.4513 2.0631 1.2001 10 6 7.8027 0.7815 0.8189 11 6 9.1353 0.4379 0.6907 12 6 10.1199 1.3744 0.9541 13 9 11.4228 1.0377 0.8344 14 6 9.7676 2.6582 1.3415 15 9 10.7269 3.5738 1.5996 16 6 8.4320 3.0006 1.4639 17 6 5.9287 4.1595 -0.3658 18 6 5.5689 4.4225 -1.8295 19 1 4.4879 4.3608 -1.9546 20 8 6.2010 3.4450 -2.6584 21 6 6.0422 5.7979 -2.2238 22 1 6.5492 6.4218 -1.5027 23 6 5.8278 6.2596 -3.5051 24 7 6.2412 7.4596 -3.8495 25 14 4.9514 5.1800 -4.7526 26 1 5.9489 4.3570 -5.4823 27 1 3.9934 4.2892 -4.0498 28 1 4.2150 6.0360 -5.7171 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9556 0.7810 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 3.5989 3.2392 0.8834 35 1 3.6218 3.2333 -0.8964 36 1 5.9000 3.2757 2.0232 37 1 5.4373 1.5843 1.7181 38 1 7.0350 0.0492 0.6171 39 1 9.4083 -0.5625 0.3888 40 1 8.1565 4.0004 1.7653 41 1 7.0097 4.2212 -0.2406 42 1 5.4466 4.9052 0.2664 43 1 7.1660 3.4426 -2.5978 44 1 6.0907 7.7844 -4.7510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929617839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:43 Heat of formation + Delta-G solvation = -191.684317 kcal Electronic energy + Delta-G solvation = -30380.374410 eV Core-core repulsion = 25741.316250 eV Total energy + Delta-G solvation = -4639.058160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.45707 -48.53363 -40.56253 -39.48780 -37.71119 -36.57454 -35.38947 -32.30539 -32.25610 -30.97966 -30.81919 -28.66981 -27.76784 -26.00087 -24.71938 -23.30984 -22.67212 -21.41400 -20.75346 -19.89992 -17.98338 -17.82895 -17.41033 -17.12828 -16.94366 -16.68712 -16.58139 -16.31386 -15.32551 -15.17381 -14.94540 -14.88840 -14.67570 -14.52029 -14.27459 -13.97619 -13.91130 -13.69198 -13.34207 -13.10865 -12.87543 -12.73526 -12.51741 -12.29042 -12.06420 -11.85779 -11.71582 -11.49264 -11.32981 -10.99258 -10.96607 -10.85724 -10.84413 -10.59651 -10.53181 -9.77836 -9.19121 -9.11078 -8.69877 -8.66369 -8.46521 -8.04055 -6.14543 -4.26836 0.84686 0.94743 2.14193 2.56956 3.25042 3.45094 3.48491 3.61050 3.74840 4.15897 4.32234 4.47290 4.49246 4.56629 4.70008 4.89478 4.91720 4.93567 4.99724 5.02102 5.09648 5.17258 5.28545 5.34066 5.36188 5.51623 5.66823 5.75733 5.77780 5.83161 5.84707 5.93883 5.96546 6.12405 6.15796 6.28870 6.33609 6.53465 6.68511 7.11157 7.20583 7.41089 7.60533 7.66923 8.26223 8.80771 9.04787 9.48965 10.95844 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.006505 B = 0.004559 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4303.173514 B = 6140.572743 C = 9499.000989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.505 6.505 5 C -0.108 4.108 6 C 0.063 3.937 7 N -0.524 5.524 8 C 0.084 3.916 9 C -0.047 4.047 10 C -0.077 4.077 11 C -0.127 4.127 12 C 0.061 3.939 13 F -0.133 7.133 14 C 0.069 3.931 15 F -0.130 7.130 16 C -0.117 4.117 17 C 0.038 3.962 18 C 0.199 3.801 19 H 0.059 0.941 20 O -0.575 6.575 21 C -0.565 4.565 22 H 0.073 0.927 23 C 0.084 3.916 24 N -0.892 5.892 25 Si 0.915 3.085 26 H -0.278 1.278 27 H -0.268 1.268 28 H -0.307 1.307 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.359 0.641 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -17.942 12.831 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.392 6.392 5 C -0.146 4.146 6 C -0.064 4.064 7 N -0.248 5.248 8 C -0.043 4.043 9 C -0.048 4.048 10 C -0.096 4.096 11 C -0.145 4.145 12 C 0.040 3.960 13 F -0.112 7.112 14 C 0.049 3.951 15 F -0.109 7.109 16 C -0.137 4.137 17 C -0.089 4.089 18 C 0.141 3.859 19 H 0.077 0.923 20 O -0.380 6.380 21 C -0.602 4.602 22 H 0.091 0.909 23 C -0.121 4.121 24 N -0.529 5.529 25 Si 0.744 3.256 26 H -0.204 1.204 27 H -0.193 1.193 28 H -0.235 1.235 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.205 0.795 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.977 -17.938 12.212 21.903 hybrid contribution 0.145 0.602 0.033 0.620 sum -2.832 -17.336 12.244 21.412 Atomic orbital electron populations 1.23241 0.76562 1.03478 1.02598 1.86506 1.23315 1.33791 1.84364 1.23917 0.92373 0.81202 0.72178 1.90702 1.67329 1.36278 1.44866 1.21393 0.86353 1.00595 1.06285 1.21905 0.87842 0.93377 1.03324 1.61926 1.07845 1.29860 1.25128 1.21145 0.90788 1.00745 0.91643 1.19656 0.95233 0.92901 0.97022 1.20910 0.95106 0.96364 0.97222 1.21047 0.92132 0.99554 1.01808 1.17703 0.79170 0.93114 1.05978 1.91514 1.33191 1.92628 1.93851 1.17640 0.86641 0.85954 1.04888 1.91532 1.62494 1.65132 1.91723 1.21054 0.89773 1.01229 1.01617 1.22926 1.00413 0.85630 0.99917 1.19893 0.94155 0.87476 0.84370 0.92304 1.86358 1.23007 1.60429 1.68204 1.21510 1.40578 0.99640 0.98513 0.90939 1.24996 0.93995 0.94548 0.98576 1.69955 1.45662 1.17453 1.19842 0.86230 0.79963 0.79234 0.80132 1.20393 1.19310 1.23491 0.92003 0.91850 0.88251 0.86428 0.88026 0.93939 0.88665 0.93371 0.89733 0.84210 0.83880 0.83852 0.90667 0.94448 0.79496 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.99 10.57 -39.26 -0.41 -4.41 16 3 C 0.46 5.84 7.96 36.00 0.29 6.12 16 4 O -0.50 -8.04 15.73 -18.76 -0.30 -8.34 16 5 C -0.11 -1.18 5.89 -27.88 -0.16 -1.35 16 6 C 0.06 0.89 4.12 -3.82 -0.02 0.87 16 7 N -0.52 -7.36 4.25 -236.08 -1.00 -8.36 16 8 C 0.08 0.91 4.96 -4.97 -0.02 0.88 16 9 C -0.05 -0.52 5.02 -104.62 -0.53 -1.04 16 10 C -0.08 -0.74 9.72 -39.58 -0.38 -1.13 16 11 C -0.13 -1.27 10.02 -39.52 -0.40 -1.66 16 12 C 0.06 0.75 7.31 -39.36 -0.29 0.47 16 13 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 14 C 0.07 0.91 7.31 -39.36 -0.29 0.63 16 15 F -0.13 -1.92 17.18 2.25 0.04 -1.88 16 16 C -0.12 -1.43 8.38 -39.53 -0.33 -1.76 16 17 C 0.04 0.68 4.39 -3.83 -0.02 0.66 16 18 C 0.20 4.44 2.21 -27.88 -0.06 4.38 16 19 H 0.06 1.40 5.33 -51.93 -0.28 1.12 16 20 O -0.57 -12.61 10.90 -35.23 -0.38 -13.00 16 21 C -0.56 -15.31 9.34 -34.44 -0.32 -15.63 16 22 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 23 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 24 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 25 Si 0.91 23.26 26.18 -169.99 -4.45 18.81 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.27 -6.75 6.54 56.52 0.37 -6.38 16 28 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.56 8.13 -51.92 -0.42 0.14 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.10 0.81 6.54 -51.92 -0.34 0.47 16 34 H 0.04 0.58 7.99 -51.93 -0.41 0.17 16 35 H 0.10 1.65 5.90 -51.93 -0.31 1.34 16 36 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 37 H 0.08 0.70 6.24 -51.93 -0.32 0.38 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.14 1.67 8.00 -52.49 -0.42 1.25 16 41 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16 42 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.36 7.20 9.04 45.56 0.41 7.61 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -33.24 375.74 -6.55 -39.79 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.95 Total: 4.65 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.56 Total: -4.91 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.23 Total: -34.63 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.09 Total: -25.74 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.62 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.45 Total: 18.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.24 -6.55 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929617839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.897 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds