Wall clock time and date at job start Wed Apr 1 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35729 * 116.99861 * 2 1 4 4 C 1.40443 * 119.68802 * 180.02562 * 3 2 1 5 5 C 1.36120 * 120.05859 * 179.97438 * 4 3 2 6 6 C 1.40733 * 119.30083 * 359.97438 * 5 4 3 7 7 N 1.33204 * 132.16414 * 179.97438 * 6 5 4 8 8 C 1.32244 * 109.70115 * 180.02562 * 7 6 5 9 9 C 1.38765 * 108.14035 * 359.97438 * 8 7 6 10 10 C 1.46182 * 126.77020 * 180.02562 * 9 8 7 11 11 O 1.21757 * 119.99873 * 0.02674 * 10 9 8 12 12 N 1.34769 * 120.00101 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99744 * 179.97438 * 12 10 9 14 14 H 1.08995 * 115.51803 * 350.41530 * 13 12 10 15 15 C 1.53005 * 117.43914 * 204.99817 * 13 12 10 16 16 H 1.08988 * 119.54358 * 5.71688 * 15 13 12 17 17 C 1.54389 * 118.12025 * 160.81189 * 15 13 12 18 18 N 1.48145 * 104.62096 * 89.20542 * 17 15 13 19 19 C 1.36937 * 127.83797 * 140.41350 * 18 17 15 20 20 H 1.07998 * 120.00135 * 338.92153 * 19 18 17 21 21 C 1.38814 * 119.99845 * 158.92211 * 19 18 17 22 22 N 1.31620 * 120.00219 * 335.62295 * 21 19 18 23 23 Si 1.86807 * 119.99907 * 155.61961 * 21 19 18 24 24 H 1.48505 * 109.46510 * 60.00394 * 23 21 19 25 25 H 1.48496 * 109.47218 * 300.00412 * 23 21 19 26 26 H 1.48498 * 109.46941 * 179.97438 * 23 21 19 27 27 C 1.48153 * 104.32530 * 320.67685 * 18 17 15 28 28 C 1.53993 * 104.81380 * 39.27387 * 27 18 17 29 29 H 1.08993 * 118.03125 * 115.98706 * 28 27 18 30 30 N 1.36466 * 119.18631 * 0.28625 * 6 5 4 31 31 N 1.31207 * 119.68208 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47378 * 60.00165 * 1 2 3 33 33 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47473 * 299.99899 * 1 2 3 35 35 H 1.08004 * 119.96682 * 0.02562 * 4 3 2 36 36 H 1.07995 * 120.35058 * 179.97438 * 5 4 3 37 37 H 1.08005 * 125.93382 * 180.02562 * 8 7 6 38 38 H 0.96998 * 120.00740 * 359.97438 * 12 10 9 39 39 H 1.09007 * 110.40708 * 330.42502 * 17 15 13 40 40 H 1.08993 * 110.50841 * 208.04433 * 17 15 13 41 41 H 0.96998 * 119.99845 * 354.46721 * 22 21 19 42 42 H 1.09000 * 110.40870 * 158.10391 * 27 18 17 43 43 H 1.09000 * 110.40347 * 280.54104 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4480 1.2753 -0.0005 5 6 4.0738 2.4841 -0.0011 6 6 3.3005 3.6600 -0.0016 7 7 3.6342 4.9495 -0.0018 8 6 2.5405 5.6930 -0.0018 9 6 1.4418 4.8453 -0.0022 10 6 0.0337 5.2379 -0.0030 11 8 -0.2695 6.4171 -0.0037 12 7 -0.9288 4.2946 -0.0028 13 6 -2.3400 4.6881 -0.0030 14 1 -2.5318 5.7485 0.1606 15 6 -3.3498 3.6921 0.5710 16 1 -2.9930 2.7763 1.0421 17 6 -4.7343 4.2245 0.9989 18 7 -5.5678 4.1223 -0.2216 19 6 -6.8793 3.7391 -0.3135 20 1 -7.3277 3.1546 0.4762 21 6 -7.6323 4.1020 -1.4217 22 7 -7.2972 5.1618 -2.1267 23 14 -9.1212 3.0862 -1.9126 24 1 -10.1033 3.0774 -0.7987 25 1 -8.6954 1.6946 -2.2081 26 1 -9.7488 3.6796 -3.1206 27 6 -4.6588 4.5224 -1.3208 28 6 -3.3012 3.8926 -0.9580 29 1 -2.8949 3.1320 -1.6247 30 7 1.9394 3.5614 0.0043 31 7 1.3244 2.3058 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 4.0308 0.3660 -0.0014 36 1 5.1523 2.5403 -0.0011 37 1 2.5079 6.7725 -0.0023 38 1 -0.6874 3.3551 -0.0026 39 1 -4.6591 5.2629 1.3218 40 1 -5.1506 3.6086 1.7961 41 1 -6.5742 5.7348 -1.8272 42 1 -5.0169 4.1293 -2.2723 43 1 -4.5715 5.6080 -1.3656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960648827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:53 Heat of formation + Delta-G solvation = 97.741721 kcal Electronic energy + Delta-G solvation = -29316.963228 eV Core-core repulsion = 25173.437460 eV Total energy + Delta-G solvation = -4143.525767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.82163 -41.20613 -40.88946 -39.82650 -37.93031 -36.36556 -35.16650 -34.34707 -32.18192 -31.85605 -30.85217 -29.25961 -28.72958 -27.47296 -25.78278 -24.77331 -24.08799 -22.98065 -22.12847 -21.86759 -21.05597 -20.07632 -19.80512 -19.54996 -18.06453 -17.90571 -17.87005 -17.41056 -16.85400 -16.34007 -16.03366 -15.89058 -15.74406 -15.54989 -15.36534 -15.29357 -15.03787 -14.87210 -14.50555 -13.96610 -13.79629 -13.67993 -13.41327 -13.05240 -12.66669 -12.57833 -12.56899 -12.47594 -12.38421 -11.96602 -11.90311 -11.81757 -11.68584 -11.55004 -11.30171 -10.97773 -10.64562 -10.37811 -9.96578 -9.50693 -9.13637 -8.40822 -5.44018 -0.79656 -0.37286 0.28649 0.99575 1.56359 1.62021 1.66705 1.78129 1.84119 1.91312 2.06544 2.58960 2.61384 2.68381 2.83094 3.13929 3.35430 3.46542 3.56382 3.65119 3.69206 3.89030 3.93458 4.01279 4.16869 4.20194 4.22571 4.23483 4.27559 4.44929 4.59751 4.63706 4.66150 4.70203 4.80708 4.87799 4.93837 5.08683 5.11916 5.17803 5.27390 5.58970 5.69054 6.10408 6.21627 6.22082 6.38876 6.76058 6.86595 7.60336 8.27205 8.95133 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.002642 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.438634 B =10594.889931 C =11902.601279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.278 6.278 3 C 0.353 3.647 4 C -0.144 4.144 5 C 0.017 3.983 6 C 0.172 3.828 7 N -0.473 5.473 8 C 0.112 3.888 9 C -0.089 4.089 10 C 0.599 3.401 11 O -0.559 6.559 12 N -0.679 5.679 13 C 0.113 3.887 14 H 0.119 0.881 15 C -0.150 4.150 16 H 0.135 0.865 17 C 0.148 3.852 18 N -0.619 5.619 19 C -0.341 4.341 20 H 0.067 0.933 21 C -0.080 4.080 22 N -0.947 5.947 23 Si 1.124 2.876 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.292 1.292 27 C 0.172 3.828 28 C -0.178 4.178 29 H 0.125 0.875 30 N -0.231 5.231 31 N -0.372 5.372 32 H 0.060 0.940 33 H 0.137 0.863 34 H 0.064 0.936 35 H 0.212 0.788 36 H 0.217 0.783 37 H 0.218 0.782 38 H 0.415 0.585 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.253 0.747 42 H 0.038 0.962 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.394 -13.811 5.688 31.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.146 3.854 4 C -0.169 4.169 5 C -0.008 4.008 6 C -0.074 4.074 7 N -0.194 5.194 8 C -0.051 4.051 9 C -0.208 4.208 10 C 0.387 3.613 11 O -0.438 6.438 12 N -0.329 5.329 13 C 0.006 3.994 14 H 0.137 0.863 15 C -0.170 4.170 16 H 0.153 0.847 17 C 0.023 3.977 18 N -0.345 5.345 19 C -0.469 4.469 20 H 0.084 0.916 21 C -0.276 4.276 22 N -0.589 5.589 23 Si 0.947 3.053 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.219 1.219 27 C 0.046 3.954 28 C -0.199 4.199 29 H 0.142 0.858 30 N -0.004 5.004 31 N -0.209 5.209 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.233 0.767 37 H 0.235 0.765 38 H 0.253 0.747 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 25.668 -13.156 4.584 29.206 hybrid contribution 0.498 -0.029 1.044 1.158 sum 26.167 -13.185 5.629 29.837 Atomic orbital electron populations 1.23396 0.74961 1.06463 1.02842 1.86457 1.24751 1.20348 1.86195 1.21144 0.92134 0.84783 0.87332 1.21394 0.90039 1.01642 1.03830 1.21084 1.03239 0.85219 0.91298 1.22032 0.81749 0.96044 1.07622 1.70556 1.28809 0.98928 1.21061 1.23486 0.84262 1.00847 0.96477 1.21089 0.95119 0.80908 1.23722 1.16770 0.83342 0.85259 0.75896 1.90868 1.82685 1.17956 1.52242 1.45192 1.04099 1.10382 1.73262 1.22176 0.77658 0.97157 1.02409 0.86301 1.24176 0.95527 1.01022 0.96307 0.84705 1.21261 0.88783 0.97530 0.90116 1.45517 1.07809 1.79433 1.01705 1.20053 0.86607 1.30395 1.09877 0.91553 1.27415 1.05071 0.98269 0.96803 1.70888 1.31133 1.12810 1.44068 0.82760 0.72225 0.74225 0.76136 1.19725 1.20200 1.21855 1.20806 0.87530 0.95004 0.92092 1.24791 0.96807 1.04026 0.94301 0.85764 1.46123 1.07048 1.02914 1.44329 1.75089 1.25067 0.88335 1.32455 0.92078 0.84501 0.91704 0.77156 0.76668 0.76523 0.74686 0.96145 0.91645 0.93696 0.94351 0.97493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.38 113.37 1.18 1.36 16 2 O -0.28 -3.19 10.49 -90.52 -0.95 -4.14 16 3 C 0.35 4.74 7.60 85.32 0.65 5.38 16 4 C -0.14 -0.93 9.97 22.31 0.22 -0.71 16 5 C 0.02 0.14 10.10 22.39 0.23 0.37 16 6 C 0.17 3.24 7.85 134.06 1.05 4.29 16 7 N -0.47 -10.38 11.25 -192.61 -2.17 -12.55 16 8 C 0.11 2.64 11.69 84.76 0.99 3.63 16 9 C -0.09 -2.39 7.10 40.41 0.29 -2.10 16 10 C 0.60 19.19 7.77 86.31 0.67 19.86 16 11 O -0.56 -21.27 16.47 -4.53 -0.07 -21.35 16 12 N -0.68 -20.40 5.57 -440.09 -2.45 -22.85 16 13 C 0.11 3.90 6.20 46.44 0.29 4.19 16 14 H 0.12 4.66 7.40 -2.39 -0.02 4.65 16 15 C -0.15 -5.11 6.91 -9.88 -0.07 -5.18 16 16 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 17 C 0.15 6.29 7.04 86.53 0.61 6.90 16 18 N -0.62 -32.38 3.23 -688.91 -2.22 -34.60 16 19 C -0.34 -19.55 10.19 84.03 0.86 -18.69 16 20 H 0.07 3.70 7.94 -2.91 -0.02 3.68 16 21 C -0.08 -4.66 5.12 84.86 0.43 -4.22 16 22 N -0.95 -59.73 12.82 21.65 0.28 -59.45 16 23 Si 1.12 51.11 29.98 68.60 2.06 53.16 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 27 C 0.17 8.45 5.01 86.40 0.43 8.89 16 28 C -0.18 -6.71 7.22 -8.57 -0.06 -6.77 16 29 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 30 N -0.23 -5.25 4.04 -181.37 -0.73 -5.99 16 31 N -0.37 -7.27 8.87 -170.59 -1.51 -8.78 16 32 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 35 H 0.21 -0.43 8.06 -2.91 -0.02 -0.45 16 36 H 0.22 0.02 8.06 -2.91 -0.02 0.00 16 37 H 0.22 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.41 10.89 6.81 -92.71 -0.63 10.26 16 39 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.25 16.37 6.41 -92.71 -0.59 15.77 16 42 H 0.04 2.08 7.47 -2.39 -0.02 2.06 16 43 H 0.01 0.38 7.66 -2.39 -0.02 0.36 16 Total: -1.00 -80.37 368.96 0.60 -79.77 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.61 Total: 19.58 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 7.76 Total: 17.19 kcal Atomic # 7 Polarization: -135.41 SS G_CDS: -8.81 Total: -144.22 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.02 Total: -25.49 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.06 Total: 53.16 kcal Total: -80.37 0.60 -79.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960648827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.514 kcal (2) G-P(sol) polarization free energy of solvation -80.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds