Wall clock time and date at job start Wed Apr 1 2020 02:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00315 * 2 1 4 4 H 1.07994 * 120.00562 * 203.44863 * 3 2 1 5 5 C 1.38814 * 119.99933 * 23.44517 * 3 2 1 6 6 N 1.31628 * 119.99696 * 14.52483 * 5 3 2 7 7 Si 1.86804 * 120.00253 * 194.52982 * 5 3 2 8 8 H 1.48501 * 109.47016 * 89.99792 * 7 5 3 9 9 H 1.48501 * 109.46801 * 209.99968 * 7 5 3 10 10 H 1.48495 * 109.46673 * 329.99952 * 7 5 3 11 11 C 1.46507 * 119.99840 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.63764 * 178.31164 * 11 2 1 13 13 C 1.55445 * 110.70903 * 55.00023 * 11 2 1 14 14 C 1.54901 * 101.45165 * 206.14623 * 13 11 2 15 15 N 1.47424 * 104.93205 * 37.00299 * 14 13 11 16 16 C 1.34774 * 125.65389 * 155.79370 * 15 14 13 17 17 O 1.21549 * 120.00436 * 180.02562 * 16 15 14 18 18 C 1.47884 * 119.99682 * 0.03207 * 16 15 14 19 19 C 1.38815 * 119.32808 * 180.02562 * 18 16 15 20 20 C 1.39854 * 118.37922 * 179.97438 * 19 18 16 21 21 C 1.41386 * 122.96066 * 179.97438 * 20 19 18 22 22 O 1.35223 * 120.99511 * 359.97438 * 21 20 19 23 23 N 1.32501 * 118.01648 * 180.02562 * 21 20 19 24 24 C 1.32359 * 121.48452 * 359.97438 * 23 21 20 25 25 N 1.31306 * 123.09532 * 0.02666 * 24 23 21 26 26 C 1.33697 * 120.36434 * 359.95455 * 25 24 23 27 27 C 1.40618 * 122.60996 * 180.02562 * 26 25 24 28 28 N 1.30919 * 120.15465 * 179.80973 * 27 26 25 29 29 C 1.47022 * 108.69979 * 335.81958 * 15 14 13 30 30 H 1.08994 * 109.47186 * 275.18641 * 1 2 3 31 31 H 1.09005 * 109.47136 * 35.18790 * 1 2 3 32 32 H 1.09000 * 109.47509 * 155.18829 * 1 2 3 33 33 H 0.96999 * 119.99374 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.11932 * 88.09019 * 13 11 2 35 35 H 1.09008 * 111.01137 * 324.15350 * 13 11 2 36 36 H 1.08999 * 110.36863 * 278.11045 * 14 13 11 37 37 H 1.09001 * 110.37269 * 155.89983 * 14 13 11 38 38 H 1.08001 * 120.80718 * 359.94794 * 19 18 16 39 39 H 0.96696 * 113.99956 * 89.99951 * 22 21 20 40 40 H 1.07998 * 118.45536 * 180.02562 * 24 23 21 41 41 H 1.08001 * 119.92922 * 0.02845 * 27 26 25 42 42 H 1.09001 * 109.88638 * 120.47730 * 29 15 14 43 43 H 1.09003 * 109.88433 * 241.63730 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1628 1.2245 -0.3721 5 6 1.5416 2.3384 0.4783 6 7 0.4356 2.2534 1.1869 7 14 2.2929 4.0100 0.1163 8 1 1.7333 4.5396 -1.1532 9 1 1.9763 4.9455 1.2253 10 1 3.7660 3.8734 -0.0110 11 6 2.1975 -1.2688 -0.0006 12 1 3.2726 -1.0917 -0.0305 13 6 1.7501 -2.1613 -1.1920 14 6 2.0637 -3.5780 -0.6498 15 7 1.7323 -3.5174 0.7854 16 6 1.4045 -4.5697 1.5611 17 8 1.1487 -4.4014 2.7374 18 6 1.3560 -5.9291 0.9810 19 6 1.0162 -7.0029 1.7925 20 6 0.9759 -8.2797 1.2232 21 6 0.6426 -9.4399 1.9593 22 8 0.3415 -9.3670 3.2756 23 7 0.6351 -10.6011 1.3211 24 6 0.9287 -10.6839 0.0332 25 7 1.2450 -9.6406 -0.6986 26 6 1.2826 -8.4199 -0.1547 27 6 1.6145 -7.2707 -0.8939 28 7 1.6330 -6.0976 -0.3130 29 6 1.8182 -2.1188 1.2304 30 1 -0.3633 0.0929 1.0234 31 1 -0.3634 0.8399 -0.5922 32 1 -0.3634 -0.9328 -0.4312 33 1 0.0106 3.0588 1.5208 34 1 2.3362 -1.9463 -2.0856 35 1 0.6842 -2.0453 -1.3886 36 1 3.1197 -3.8111 -0.7858 37 1 1.4443 -4.3218 -1.1510 38 1 0.7888 -6.8559 2.8380 39 1 -0.5981 -9.2287 3.4570 40 1 0.9071 -11.6554 -0.4381 41 1 1.8514 -7.3554 -1.9442 42 1 0.8541 -1.7944 1.6220 43 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980282421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:53 Heat of formation + Delta-G solvation = 58.320012 kcal Electronic energy + Delta-G solvation = -29194.813968 eV Core-core repulsion = 25049.578747 eV Total energy + Delta-G solvation = -4145.235221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26067 -40.20944 -38.84659 -38.24662 -37.37413 -34.83687 -33.91151 -33.14226 -31.72998 -30.97234 -29.69053 -28.02643 -26.13248 -25.95519 -25.85336 -23.67583 -23.26516 -22.33768 -20.89988 -19.98803 -19.20096 -19.08644 -18.12158 -17.65414 -17.04151 -16.47616 -16.02226 -15.84372 -15.43203 -15.30012 -14.95140 -14.86234 -14.73813 -14.25867 -14.06366 -13.45324 -13.33311 -13.25158 -12.86629 -12.60909 -12.45448 -12.13196 -11.86636 -11.57475 -11.45200 -11.40299 -10.92541 -10.83790 -10.71322 -10.68139 -10.49469 -10.43412 -10.22885 -10.09713 -9.85926 -9.78515 -9.52520 -9.03189 -8.58137 -8.28914 -6.81415 -5.76932 -3.25088 -0.67330 -0.14788 0.98947 2.06806 2.55915 2.96923 3.02303 3.36226 3.36919 3.43202 3.44597 3.51651 3.54433 3.74140 3.95697 4.10613 4.45271 4.47655 4.55417 4.89438 5.02296 5.12570 5.18077 5.31183 5.41515 5.50670 5.62101 5.66430 5.70699 5.91994 5.98256 6.15895 6.23018 6.36782 6.42331 6.56584 6.64205 6.65852 6.81549 6.88408 7.14078 7.30699 7.38711 7.69656 7.72349 7.77210 8.20471 8.34784 9.17462 9.80168 10.29586 11.27105 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.002222 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.148888 B =12598.922526 C =13203.250972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.172 3.828 12 H 0.079 0.921 13 C -0.157 4.157 14 C 0.103 3.897 15 N -0.587 5.587 16 C 0.574 3.426 17 O -0.538 6.538 18 C 0.067 3.933 19 C -0.049 4.049 20 C -0.161 4.161 21 C 0.422 3.578 22 O -0.464 6.464 23 N -0.536 5.536 24 C 0.328 3.672 25 N -0.494 5.494 26 C 0.128 3.872 27 C 0.154 3.846 28 N -0.422 5.422 29 C 0.085 3.915 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.004 0.996 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.165 0.835 39 H 0.419 0.581 40 H 0.208 0.792 41 H 0.187 0.813 42 H 0.076 0.924 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 -25.415 -3.984 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.197 4.197 14 C -0.020 4.020 15 N -0.318 5.318 16 C 0.360 3.640 17 O -0.416 6.416 18 C -0.059 4.059 19 C -0.072 4.072 20 C -0.171 4.171 21 C 0.221 3.779 22 O -0.273 6.273 23 N -0.262 5.262 24 C 0.039 3.961 25 N -0.211 5.211 26 C -0.003 4.003 27 C -0.020 4.020 28 N -0.133 5.133 29 C -0.039 4.039 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.182 0.818 39 H 0.281 0.719 40 H 0.224 0.776 41 H 0.204 0.796 42 H 0.094 0.906 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.042 -25.210 -4.005 25.527 hybrid contribution -0.353 0.905 0.889 1.316 sum -0.394 -24.306 -3.116 24.508 Atomic orbital electron populations 1.20806 0.82559 0.95655 0.99635 1.43925 1.01845 0.99944 1.84785 1.19218 0.98940 0.85242 1.35709 0.91166 1.25074 0.98063 0.98700 0.97612 1.70082 1.20602 1.27463 1.36485 0.86225 0.78732 0.83953 0.77428 1.21436 1.21759 1.20405 1.21444 0.96432 0.85855 0.90092 0.90285 1.23463 1.02621 0.93800 0.99818 1.22667 1.00808 0.98628 0.79883 1.48389 1.64505 1.07472 1.11425 1.17297 0.78822 0.82548 0.85370 1.90814 1.50889 1.84610 1.15329 1.21227 1.00154 0.94990 0.89550 1.22069 0.93432 0.89567 1.02142 1.19733 1.06012 0.95609 0.95779 1.19568 0.87772 0.86625 0.83981 1.84618 1.32468 1.93900 1.16310 1.68064 1.18302 1.28131 1.11735 1.24946 0.88315 0.98208 0.84600 1.68722 1.15209 0.98311 1.38827 1.20131 0.95604 0.94201 0.90349 1.23217 0.93756 0.84331 1.00701 1.67852 1.09880 1.24960 1.10605 1.23050 1.02583 0.78213 1.00087 0.94922 0.94012 0.97793 0.93615 0.90400 0.90631 0.91745 0.88461 0.81758 0.71888 0.77565 0.79609 0.90599 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.75 59.85 0.46 4.26 16 2 N -0.58 -14.13 2.93 -171.21 -0.50 -14.63 16 3 C -0.26 -6.97 9.59 -15.06 -0.14 -7.11 16 4 H 0.07 1.82 7.85 -52.49 -0.41 1.40 16 5 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 6 N -0.90 -26.00 10.82 55.49 0.60 -25.40 16 7 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 16 8 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.17 3.38 3.45 -65.94 -0.23 3.15 16 12 H 0.08 1.53 7.93 -51.93 -0.41 1.12 16 13 C -0.16 -2.49 6.61 -24.43 -0.16 -2.65 16 14 C 0.10 1.43 5.92 -2.53 -0.02 1.42 16 15 N -0.59 -9.80 3.33 -171.62 -0.57 -10.37 16 16 C 0.57 9.52 7.83 -12.31 -0.10 9.43 16 17 O -0.54 -10.45 16.61 5.32 0.09 -10.36 16 18 C 0.07 0.87 6.72 -83.02 -0.56 0.32 16 19 C -0.05 -0.54 9.23 -38.76 -0.36 -0.90 16 20 C -0.16 -1.57 5.76 -106.71 -0.61 -2.19 16 21 C 0.42 3.69 7.91 -16.07 -0.13 3.57 16 22 O -0.46 -3.20 13.04 -17.36 -0.23 -3.43 16 23 N -0.54 -4.64 10.43 -14.23 -0.15 -4.79 16 24 C 0.33 2.37 12.21 -92.08 -1.12 1.25 16 25 N -0.49 -4.28 10.46 -12.54 -0.13 -4.41 16 26 C 0.13 1.22 6.64 -84.77 -0.56 0.66 16 27 C 0.15 1.39 11.26 -17.04 -0.19 1.20 16 28 N -0.42 -4.77 6.46 -9.47 -0.06 -4.84 16 29 C 0.08 1.65 6.51 -3.07 -0.02 1.63 16 30 H 0.03 0.86 7.25 -51.93 -0.38 0.49 16 31 H 0.04 1.07 7.42 -51.93 -0.39 0.69 16 32 H 0.00 0.08 6.13 -51.93 -0.32 -0.24 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.27 6.15 -51.92 -0.32 0.96 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.23 5.84 -51.93 -0.30 0.93 16 38 H 0.16 1.72 7.38 -52.49 -0.39 1.33 16 39 H 0.42 0.71 9.06 45.56 0.41 1.13 16 40 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.08 1.68 7.06 -51.93 -0.37 1.31 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -34.06 358.34 -8.52 -42.58 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.12 Total: -0.26 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: -3.83 Total: 14.06 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.81 Total: -64.45 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.14 Total: -13.80 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.06 -8.52 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980282421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.898 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds