Wall clock time and date at job start Wed Apr 1 2020 02:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99562 * 2 1 4 4 O 1.21558 * 119.99946 * 177.40946 * 3 2 1 5 5 C 1.47883 * 120.00169 * 357.40438 * 3 2 1 6 6 C 1.38819 * 119.32672 * 186.94346 * 5 3 2 7 7 C 1.39861 * 118.37282 * 179.97438 * 6 5 3 8 8 C 1.41396 * 122.95396 * 179.97438 * 7 6 5 9 9 O 1.35223 * 120.99488 * 0.02562 * 8 7 6 10 10 N 1.32495 * 118.00961 * 180.02562 * 8 7 6 11 11 C 1.32361 * 121.48552 * 359.97438 * 10 8 7 12 12 N 1.31299 * 123.10030 * 359.97438 * 11 10 8 13 13 C 1.33704 * 120.36193 * 0.04775 * 12 11 10 14 14 C 1.40616 * 122.60822 * 179.97438 * 13 12 11 15 15 N 1.30918 * 120.15092 * 179.76498 * 14 13 12 16 16 C 1.46493 * 120.00204 * 179.97438 * 2 1 3 17 17 H 1.09001 * 110.64201 * 178.30889 * 16 2 1 18 18 C 1.55155 * 110.72090 * 54.97950 * 16 2 1 19 19 C 1.55128 * 101.48678 * 205.96813 * 18 16 2 20 20 N 1.47428 * 104.72351 * 37.29113 * 19 18 16 21 21 C 1.36929 * 125.64678 * 155.81725 * 20 19 18 22 22 H 1.08005 * 119.99771 * 190.37714 * 21 20 19 23 23 C 1.38814 * 120.00508 * 10.37946 * 21 20 19 24 24 N 1.31618 * 119.99518 * 8.82137 * 23 21 20 25 25 Si 1.86796 * 120.00331 * 188.81842 * 23 21 20 26 26 H 1.48499 * 109.47397 * 265.00725 * 25 23 21 27 27 H 1.48498 * 109.47089 * 25.00968 * 25 23 21 28 28 H 1.48506 * 109.46939 * 145.00410 * 25 23 21 29 29 C 1.47022 * 108.70208 * 335.55457 * 20 19 18 30 30 H 1.09005 * 109.47071 * 276.12605 * 1 2 3 31 31 H 1.08996 * 109.47471 * 36.12761 * 1 2 3 32 32 H 1.09005 * 109.46737 * 156.13243 * 1 2 3 33 33 H 1.07996 * 120.80895 * 359.96549 * 6 5 3 34 34 H 0.96699 * 113.99510 * 90.00380 * 9 8 7 35 35 H 1.08004 * 118.44744 * 180.02562 * 11 10 8 36 36 H 1.07996 * 119.92445 * 359.97438 * 14 13 12 37 37 H 1.09000 * 111.00174 * 324.20634 * 18 16 2 38 38 H 1.09000 * 111.01000 * 88.01888 * 18 16 2 39 39 H 1.09003 * 110.49611 * 278.45433 * 19 18 16 40 40 H 1.09001 * 110.34479 * 156.05591 * 19 18 16 41 41 H 0.97001 * 120.00189 * 180.02562 * 24 23 21 42 42 H 1.09003 * 109.88281 * 120.69844 * 29 20 19 43 43 H 1.08992 * 109.88300 * 241.87200 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3535 1.1679 0.0476 5 6 1.4005 2.4472 -0.0580 6 6 2.1066 3.6335 -0.2036 7 6 1.3883 4.8324 -0.2567 8 6 2.0083 6.0947 -0.4025 9 8 3.3527 6.2031 -0.4999 10 7 1.2327 7.1682 -0.4409 11 6 -0.0842 7.0733 -0.3470 12 7 -0.7127 5.9286 -0.2114 13 6 -0.0261 4.7824 -0.1608 14 6 -0.6504 3.5308 -0.0161 15 7 0.0690 2.4377 0.0233 16 6 2.1975 -1.2686 0.0006 17 1 3.2727 -1.0916 -0.0296 18 6 1.7508 -2.1610 -1.1875 19 6 2.0693 -3.5792 -0.6455 20 7 1.7326 -3.5166 0.7885 21 6 1.4007 -4.5853 1.5776 22 1 1.0087 -4.4221 2.5707 23 6 1.5680 -5.8784 1.1014 24 7 2.2035 -6.0849 -0.0326 25 14 0.8914 -7.3253 2.0698 26 1 1.9604 -7.8849 2.9355 27 1 -0.2415 -6.8692 2.9145 28 1 0.4174 -8.3722 1.1292 29 6 1.8184 -2.1176 1.2323 30 1 -0.3633 0.1097 1.0218 31 1 -0.3634 0.8300 -0.6059 32 1 -0.3633 -0.9398 -0.4158 33 1 3.1843 3.6306 -0.2740 34 1 3.6859 6.1616 -1.4067 35 1 -0.6693 7.9804 -0.3844 36 1 -1.7261 3.4708 0.0592 37 1 0.6851 -2.0446 -1.3844 38 1 2.3369 -1.9447 -2.0807 39 1 3.1266 -3.8096 -0.7771 40 1 1.4524 -4.3243 -1.1478 41 1 2.3201 -6.9884 -0.3657 42 1 0.8542 -1.7930 1.6235 43 1 2.5850 -2.0188 2.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033619413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:15 Heat of formation + Delta-G solvation = 68.574268 kcal Electronic energy + Delta-G solvation = -29207.157944 eV Core-core repulsion = 25062.367381 eV Total energy + Delta-G solvation = -4144.790563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.31444 -40.37394 -38.90649 -38.27766 -37.31189 -34.92416 -33.94215 -33.14200 -32.13079 -31.03758 -29.21140 -27.69861 -26.77867 -26.07435 -25.63797 -24.37485 -23.36636 -21.88472 -20.27575 -20.15236 -19.35286 -19.15242 -18.24922 -17.74462 -16.93713 -16.57363 -16.17626 -15.88087 -15.53313 -15.25299 -14.94371 -14.80910 -14.66671 -14.48228 -14.08611 -13.74031 -13.47311 -12.99158 -12.95279 -12.83080 -12.46260 -12.18970 -11.92244 -11.62331 -11.49987 -11.43814 -10.95140 -10.89065 -10.81799 -10.71683 -10.58380 -10.29973 -10.09909 -10.06932 -9.86100 -9.69569 -9.43842 -9.07228 -8.60370 -8.33490 -6.81709 -5.75627 -3.08984 -0.71267 -0.19069 0.94814 2.01017 2.52574 2.90529 2.93962 3.33309 3.39512 3.45152 3.46444 3.47223 3.48275 3.69671 3.90428 4.06307 4.40751 4.49984 4.51671 4.85248 4.99413 5.14252 5.39017 5.39812 5.44820 5.47410 5.57894 5.60357 5.68424 5.81520 5.93630 6.14953 6.17028 6.28019 6.34610 6.52783 6.57867 6.62346 6.69649 6.90810 7.10734 7.35404 7.45915 7.49551 7.58159 7.76498 8.12015 8.24670 9.17878 9.79339 10.46429 11.37372 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.002189 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.388957 B =12785.657772 C =13299.041203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.575 5.575 3 C 0.564 3.436 4 O -0.537 6.537 5 C 0.062 3.938 6 C -0.046 4.046 7 C -0.161 4.161 8 C 0.423 3.577 9 O -0.464 6.464 10 N -0.536 5.536 11 C 0.329 3.671 12 N -0.495 5.495 13 C 0.129 3.871 14 C 0.151 3.849 15 N -0.418 5.418 16 C 0.124 3.876 17 H 0.105 0.895 18 C -0.154 4.154 19 C 0.175 3.825 20 N -0.601 5.601 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.007 4.007 24 N -0.918 5.918 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.165 0.835 34 H 0.418 0.582 35 H 0.208 0.792 36 H 0.187 0.813 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.030 0.970 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 26.505 -5.213 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.304 5.304 3 C 0.350 3.650 4 O -0.415 6.415 5 C -0.064 4.064 6 C -0.069 4.069 7 C -0.172 4.172 8 C 0.221 3.779 9 O -0.273 6.273 10 N -0.262 5.262 11 C 0.040 3.960 12 N -0.211 5.211 13 C -0.002 4.002 14 C -0.023 4.023 15 N -0.130 5.130 16 C 0.021 3.979 17 H 0.123 0.877 18 C -0.193 4.193 19 C 0.050 3.950 20 N -0.328 5.328 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.206 1.206 28 H -0.216 1.216 29 C 0.003 3.997 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.281 0.719 35 H 0.225 0.775 36 H 0.204 0.796 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.380 26.137 -4.547 27.069 hybrid contribution 0.668 -0.635 0.074 0.924 sum -4.712 25.502 -4.473 26.317 Atomic orbital electron populations 1.22428 0.78219 1.03630 1.02886 1.47765 1.08095 1.05237 1.69344 1.17683 0.86533 0.82795 0.78035 1.90804 1.12697 1.86638 1.51353 1.21234 0.89500 0.94499 1.01146 1.22066 1.02477 0.89634 0.92771 1.19739 0.95650 0.95419 1.06402 1.19572 0.84863 0.86404 0.87072 1.84627 1.13731 1.94773 1.34125 1.68068 1.07687 1.33519 1.16945 1.24958 0.86162 0.96159 0.88697 1.68733 1.39714 0.98057 1.14582 1.20134 0.89261 0.95171 0.95607 1.23313 1.01296 0.84178 0.93488 1.68161 1.06658 1.29374 1.08796 1.22348 0.97144 0.81101 0.97337 0.87689 1.23449 1.00844 0.98663 0.96379 1.21447 0.98935 0.90477 0.84153 1.44426 1.81356 1.00830 1.06154 1.19013 1.35246 0.83874 0.97519 0.90612 1.24838 1.00235 0.97305 0.97985 1.69944 1.44981 1.20073 1.21550 0.86107 0.78565 0.82322 0.78798 1.21609 1.20581 1.21608 1.21520 0.98115 0.86279 0.93767 0.92484 0.87928 0.91126 0.81752 0.71915 0.77545 0.79571 0.91407 0.91877 0.95209 0.90893 0.93656 0.95253 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 8.06 59.85 0.48 1.42 16 2 N -0.58 -9.07 2.88 -172.93 -0.50 -9.57 16 3 C 0.56 8.72 7.65 -12.31 -0.09 8.63 16 4 O -0.54 -9.69 15.68 5.32 0.08 -9.61 16 5 C 0.06 0.76 6.63 -83.02 -0.55 0.20 16 6 C -0.05 -0.48 9.23 -38.76 -0.36 -0.83 16 7 C -0.16 -1.49 5.76 -106.71 -0.61 -2.11 16 8 C 0.42 3.50 7.91 -16.06 -0.13 3.37 16 9 O -0.46 -2.99 13.04 -17.36 -0.23 -3.21 16 10 N -0.54 -4.44 10.43 -14.23 -0.15 -4.59 16 11 C 0.33 2.27 12.21 -92.09 -1.12 1.15 16 12 N -0.49 -4.10 10.46 -12.54 -0.13 -4.23 16 13 C 0.13 1.17 6.64 -84.77 -0.56 0.61 16 14 C 0.15 1.28 11.26 -17.04 -0.19 1.09 16 15 N -0.42 -4.42 5.87 -9.47 -0.06 -4.48 16 16 C 0.12 2.30 3.35 -66.10 -0.22 2.08 16 17 H 0.11 2.08 7.00 -51.93 -0.36 1.72 16 18 C -0.15 -2.88 6.60 -24.46 -0.16 -3.04 16 19 C 0.18 4.20 5.43 -2.41 -0.01 4.18 16 20 N -0.60 -15.39 3.39 -169.93 -0.58 -15.97 16 21 C -0.23 -6.37 10.24 -15.06 -0.15 -6.52 16 22 H 0.08 2.06 7.84 -52.48 -0.41 1.64 16 23 C -0.01 -0.20 5.41 -17.43 -0.09 -0.29 16 24 N -0.92 -26.84 10.67 55.49 0.59 -26.25 16 25 Si 0.91 22.00 29.56 -169.99 -5.03 16.98 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 C 0.13 2.80 6.88 -3.06 -0.02 2.78 16 30 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.10 1.17 5.17 -53.84 -0.28 0.90 16 32 H 0.07 0.98 6.14 -51.93 -0.32 0.67 16 33 H 0.16 1.59 7.40 -52.49 -0.39 1.20 16 34 H 0.42 0.48 9.06 45.56 0.41 0.89 16 35 H 0.21 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.19 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.07 1.19 6.15 -51.93 -0.32 0.87 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.03 0.62 7.08 -51.93 -0.37 0.25 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -34.93 356.20 -8.49 -43.41 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.06 Total: -0.56 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -3.81 Total: 12.71 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.82 Total: -65.09 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.14 Total: -12.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.93 -8.49 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033619413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.984 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds