Wall clock time and date at job start Wed Apr 1 2020 02:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34783 * 120.00296 * 2 1 4 4 O 1.21550 * 119.99978 * 184.76909 * 3 2 1 5 5 C 1.47844 * 119.99681 * 4.77013 * 3 2 1 6 6 C 1.40592 * 120.27972 * 21.85249 * 5 3 2 7 7 N 1.30820 * 121.51864 * 179.68657 * 6 5 3 8 8 C 1.33757 * 121.79418 * 0.59528 * 7 6 5 9 9 N 1.33892 * 120.61262 * 179.69981 * 8 7 6 10 10 C 1.31326 * 119.84924 * 180.02562 * 9 8 7 11 11 C 1.39760 * 120.77128 * 359.95795 * 10 9 8 12 12 N 1.31311 * 120.55875 * 0.02562 * 11 10 9 13 13 C 1.33661 * 119.70524 * 359.97438 * 12 11 10 14 14 C 1.38905 * 120.27594 * 202.12589 * 5 3 2 15 15 C 1.46501 * 119.99802 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.64118 * 178.31243 * 15 2 1 17 17 C 1.54325 * 110.72075 * 301.45524 * 15 2 1 18 18 N 1.47023 * 107.27213 * 140.73395 * 17 15 2 19 19 C 1.36932 * 125.64780 * 181.02265 * 18 17 15 20 20 H 1.07995 * 120.00011 * 19.27139 * 19 18 17 21 21 C 1.38815 * 119.99804 * 199.26942 * 19 18 17 22 22 N 1.31613 * 120.00060 * 29.34781 * 21 19 18 23 23 Si 1.86797 * 119.99814 * 209.34671 * 21 19 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47296 * 60.00155 * 23 21 19 26 26 H 1.48500 * 109.47368 * 300.00075 * 23 21 19 27 27 C 1.47426 * 108.70334 * 1.28528 * 18 17 15 28 28 C 1.55141 * 104.72242 * 335.55723 * 27 18 17 29 29 H 1.09003 * 111.18581 * 279.18832 * 28 27 18 30 30 O 1.42897 * 110.93950 * 155.29000 * 28 27 18 31 31 H 1.08998 * 109.46913 * 264.53894 * 1 2 3 32 32 H 1.09009 * 109.46869 * 24.53754 * 1 2 3 33 33 H 1.08998 * 109.47260 * 144.53252 * 1 2 3 34 34 H 1.08001 * 119.24101 * 359.97438 * 6 5 3 35 35 H 1.07994 * 119.61405 * 179.97438 * 10 9 8 36 36 H 1.08000 * 119.72148 * 180.02562 * 11 10 9 37 37 H 1.08000 * 120.99814 * 359.97438 * 14 5 3 38 38 H 1.09000 * 109.87892 * 21.31751 * 17 15 2 39 39 H 1.09002 * 109.88157 * 260.14814 * 17 15 2 40 40 H 0.97000 * 120.00103 * 6.33976 * 22 21 19 41 41 H 1.08999 * 110.36675 * 94.47776 * 27 18 17 42 42 H 1.08996 * 110.36722 * 216.80861 * 27 18 17 43 43 H 0.96700 * 114.00309 * 67.95473 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3513 1.1690 -0.0875 5 6 1.4036 2.4454 0.1065 6 6 0.1093 2.4750 0.6547 7 7 -0.5608 3.5930 0.7661 8 6 -0.0558 4.7613 0.3546 9 7 -0.7650 5.8906 0.4745 10 6 -0.2548 7.0294 0.0650 11 6 1.0244 7.0792 -0.4959 12 7 1.7401 5.9858 -0.6243 13 6 1.2411 4.8156 -0.2144 14 6 1.9834 3.6262 -0.3395 15 6 2.1975 -1.2688 -0.0006 16 1 3.2726 -1.0918 -0.0305 17 6 1.8181 -2.1188 1.2304 18 7 1.7365 -3.5180 0.7863 19 6 1.4057 -4.5875 1.5748 20 1 0.8849 -4.4300 2.5077 21 6 1.7398 -5.8741 1.1750 22 7 2.8028 -6.0752 0.4253 23 14 0.6808 -7.3202 1.7010 24 1 1.2479 -8.5762 1.1477 25 1 -0.7011 -7.1334 1.1904 26 1 0.6541 -7.4008 3.1836 27 6 2.0758 -3.5796 -0.6471 28 6 1.7549 -2.1620 -1.1895 29 1 0.6892 -2.0482 -1.3882 30 8 2.5246 -1.8764 -2.3591 31 1 -0.3633 -0.0978 1.0230 32 1 -0.3633 0.9349 -0.4268 33 1 -0.3634 -0.8370 -0.5963 34 1 -0.3403 1.5543 0.9961 35 1 -0.8302 7.9379 0.1632 36 1 1.4275 8.0250 -0.8266 37 1 2.9746 3.6318 -0.7685 38 1 0.8525 -1.7965 1.6200 39 1 2.5832 -2.0183 2.0003 40 1 3.4036 -5.3395 0.2284 41 1 3.1338 -3.8073 -0.7770 42 1 1.4615 -4.3260 -1.1506 43 1 2.2838 -2.4104 -3.1285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047411885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:20 Heat of formation + Delta-G solvation = 70.535525 kcal Electronic energy + Delta-G solvation = -29503.720680 eV Core-core repulsion = 25359.015164 eV Total energy + Delta-G solvation = -4144.705517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18724 -40.52978 -38.70693 -37.89324 -35.63366 -35.44886 -35.17849 -32.57879 -32.25312 -31.43833 -28.77042 -27.88752 -27.25554 -26.34558 -25.31537 -24.23761 -23.27576 -21.84193 -20.65526 -19.95211 -19.51929 -18.43190 -18.33596 -17.68242 -17.20504 -16.50628 -16.22630 -16.02247 -15.78625 -15.37074 -14.99849 -14.71115 -14.19390 -13.97483 -13.92268 -13.66980 -13.51903 -13.33682 -13.21525 -13.07952 -12.54333 -12.32650 -12.28142 -12.21412 -11.97170 -11.78035 -11.42476 -11.07792 -10.81220 -10.67978 -10.30239 -10.18031 -10.08440 -9.85973 -9.79182 -9.58973 -9.49294 -9.22384 -8.66921 -8.49757 -7.08751 -6.20798 -3.28827 -0.55542 -0.25049 1.27032 1.93964 2.62663 2.82958 3.03573 3.44875 3.46158 3.47920 3.51910 3.55527 3.66288 4.01966 4.09760 4.20106 4.30509 4.39443 4.50582 4.53262 4.75824 4.80121 4.97531 5.00820 5.11653 5.20677 5.31072 5.33419 5.36793 5.44484 5.50432 5.62600 5.79398 5.83767 5.85139 6.22296 6.43201 6.43434 6.59886 6.67394 6.83992 6.93881 7.21247 7.41324 7.65555 7.89887 7.93826 8.36865 8.87914 9.68119 10.20247 11.10326 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002369 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.388120 B =11816.777786 C =12412.829539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.591 5.591 3 C 0.565 3.435 4 O -0.521 6.521 5 C -0.172 4.172 6 C 0.169 3.831 7 N -0.457 5.457 8 C 0.271 3.729 9 N -0.418 5.418 10 C 0.112 3.888 11 C 0.071 3.929 12 N -0.404 5.404 13 C 0.018 3.982 14 C 0.038 3.962 15 C 0.138 3.862 16 H 0.117 0.883 17 C 0.129 3.871 18 N -0.595 5.595 19 C -0.343 4.343 20 H 0.067 0.933 21 C -0.022 4.022 22 N -0.908 5.908 23 Si 1.064 2.936 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.120 3.880 28 C 0.073 3.927 29 H 0.067 0.933 30 O -0.560 6.560 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.200 0.800 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.165 0.835 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.270 0.730 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 23.923 -4.229 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.323 5.323 3 C 0.352 3.648 4 O -0.397 6.397 5 C -0.179 4.179 6 C -0.007 4.007 7 N -0.165 5.165 8 C 0.031 3.969 9 N -0.133 5.133 10 C -0.067 4.067 11 C -0.106 4.106 12 N -0.119 5.119 13 C -0.109 4.109 14 C 0.010 3.990 15 C 0.035 3.965 16 H 0.135 0.865 17 C 0.002 3.998 18 N -0.324 5.324 19 C -0.470 4.470 20 H 0.085 0.915 21 C -0.225 4.225 22 N -0.548 5.548 23 Si 0.894 3.106 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.007 4.007 28 C 0.012 3.988 29 H 0.085 0.915 30 O -0.364 6.364 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.216 0.784 35 H 0.202 0.798 36 H 0.201 0.799 37 H 0.183 0.817 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.347 22.479 -3.576 23.918 hybrid contribution 0.698 1.377 -0.459 1.610 sum -6.650 23.856 -4.035 25.092 Atomic orbital electron populations 1.22537 0.79990 1.03882 1.02645 1.47604 1.06824 1.05656 1.72195 1.17816 0.86976 0.82788 0.77258 1.90821 1.13172 1.86688 1.49018 1.21165 0.97001 0.95218 1.04529 1.24596 0.89275 0.96935 0.89923 1.67635 1.35529 0.96668 1.16713 1.20173 0.89131 0.92598 0.94980 1.68354 1.33827 0.97427 1.13685 1.24352 0.94171 0.96680 0.91511 1.24248 0.92473 0.98046 0.95797 1.68608 1.33863 0.97756 1.11642 1.20186 0.94826 0.94037 1.01806 1.21782 0.99285 0.88041 0.89901 1.22220 0.98380 0.80972 0.94959 0.86517 1.21624 0.98780 0.85984 0.93389 1.44358 1.82174 1.01665 1.04162 1.19702 1.35474 0.85640 1.06205 0.91477 1.25833 0.98144 0.98534 0.99946 1.70785 1.09573 1.34681 1.39749 0.83539 0.75444 0.76039 0.75627 1.21045 1.21988 1.21857 1.22198 0.99396 0.92919 0.86179 1.23527 0.93970 0.96228 0.85059 0.91483 1.86492 1.63288 1.65216 1.21394 0.90696 0.89943 0.89691 0.78376 0.79800 0.79929 0.81705 0.94611 0.94719 0.91932 0.94244 0.92596 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 7.70 59.85 0.46 1.00 16 2 N -0.59 -8.43 2.89 -172.94 -0.50 -8.93 16 3 C 0.56 8.42 7.53 -12.33 -0.09 8.32 16 4 O -0.52 -9.61 15.97 5.32 0.08 -9.52 16 5 C -0.17 -2.09 5.57 -104.83 -0.58 -2.68 16 6 C 0.17 1.83 8.72 -17.10 -0.15 1.68 16 7 N -0.46 -5.72 10.39 -12.28 -0.13 -5.84 16 8 C 0.27 3.35 7.60 -157.60 -1.20 2.15 16 9 N -0.42 -4.56 10.55 -12.39 -0.13 -4.69 16 10 C 0.11 0.71 11.21 -17.20 -0.19 0.52 16 11 C 0.07 0.44 11.22 -17.21 -0.19 0.25 16 12 N -0.40 -4.07 10.46 -10.77 -0.11 -4.19 16 13 C 0.02 0.21 6.59 -84.78 -0.56 -0.35 16 14 C 0.04 0.45 9.68 -38.38 -0.37 0.08 16 15 C 0.14 2.44 3.08 -66.10 -0.20 2.24 16 16 H 0.12 2.36 7.00 -51.93 -0.36 1.99 16 17 C 0.13 2.57 6.88 -3.06 -0.02 2.55 16 18 N -0.59 -14.33 3.26 -169.93 -0.55 -14.89 16 19 C -0.34 -9.27 9.99 -15.06 -0.15 -9.42 16 20 H 0.07 1.81 7.98 -52.49 -0.42 1.39 16 21 C -0.02 -0.60 5.08 -17.43 -0.09 -0.69 16 22 N -0.91 -26.71 12.99 55.49 0.72 -25.99 16 23 Si 1.06 24.41 30.01 -169.99 -5.10 19.31 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.12 2.63 5.14 -2.40 -0.01 2.62 16 28 C 0.07 1.27 3.99 -24.46 -0.10 1.17 16 29 H 0.07 1.05 6.09 -51.93 -0.32 0.74 16 30 O -0.56 -9.29 13.47 -35.23 -0.47 -9.76 16 31 H 0.07 0.66 6.72 -51.93 -0.35 0.31 16 32 H 0.08 0.70 4.95 -51.92 -0.26 0.44 16 33 H 0.08 0.89 6.09 -51.93 -0.32 0.58 16 34 H 0.20 1.70 4.11 -52.49 -0.22 1.48 16 35 H 0.19 0.31 8.06 -52.49 -0.42 -0.12 16 36 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.17 1.90 7.86 -52.49 -0.41 1.49 16 38 H 0.04 0.66 6.80 -51.93 -0.35 0.31 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 8.02 6.30 -40.82 -0.26 7.77 16 41 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 42 H 0.06 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.38 4.59 9.12 45.56 0.42 5.01 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -36.96 353.46 -8.00 -44.96 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.68 Total: 4.77 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -3.45 Total: 9.44 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.70 Total: -64.52 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.39 Total: -19.29 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.10 Total: 19.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.96 -8.00 -44.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047411885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.497 kcal (2) G-P(sol) polarization free energy of solvation -36.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds