Wall clock time and date at job start Wed Apr 1 2020 02:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34782 * 120.00374 * 2 1 4 4 O 1.21476 * 119.99963 * 182.03183 * 3 2 1 5 5 C 1.48433 * 119.99580 * 1.75260 * 3 2 1 6 6 N 1.33498 * 119.21968 * 352.15109 * 5 3 2 7 7 N 1.28921 * 122.01746 * 179.74221 * 6 5 3 8 8 C 1.33813 * 119.74610 * 0.52014 * 7 6 5 9 9 C 1.40345 * 121.77669 * 179.76546 * 8 7 6 10 10 C 1.36193 * 119.62031 * 179.97438 * 9 8 7 11 11 C 1.39445 * 121.07031 * 359.97438 * 10 9 8 12 12 C 1.36125 * 121.01550 * 0.02562 * 11 10 9 13 13 C 1.40509 * 119.56671 * 359.97438 * 12 11 10 14 14 N 1.32055 * 119.21735 * 172.41511 * 5 3 2 15 15 C 1.46501 * 120.00187 * 179.97438 * 2 1 3 16 16 H 1.08990 * 110.64758 * 183.14112 * 15 2 1 17 17 C 1.54325 * 110.72224 * 306.48114 * 15 2 1 18 18 N 1.47020 * 107.27639 * 140.54982 * 17 15 2 19 19 C 1.36933 * 125.65009 * 181.02123 * 18 17 15 20 20 H 1.07996 * 119.99844 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00029 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99695 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47198 * 59.99610 * 23 21 19 25 25 H 1.48504 * 109.46733 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46595 * 299.99734 * 23 21 19 27 27 C 1.47427 * 108.70022 * 1.06275 * 18 17 15 28 28 C 1.54912 * 104.83215 * 335.86739 * 27 18 17 29 29 H 1.08997 * 111.03785 * 278.92134 * 28 27 18 30 30 O 1.42903 * 111.00315 * 155.08557 * 28 27 18 31 31 H 1.08998 * 109.47359 * 83.69654 * 1 2 3 32 32 H 1.09003 * 109.47489 * 203.69428 * 1 2 3 33 33 H 1.09004 * 109.47200 * 323.69518 * 1 2 3 34 34 H 1.07993 * 120.18991 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.45840 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.48616 * 179.97438 * 11 10 9 37 37 H 1.08007 * 120.22169 * 179.97438 * 12 11 10 38 38 H 1.09004 * 109.88112 * 259.97419 * 17 15 2 39 39 H 1.09003 * 109.88169 * 21.13231 * 17 15 2 40 40 H 0.96996 * 119.99461 * 179.97438 * 22 21 19 41 41 H 1.09004 * 110.36389 * 217.03245 * 27 18 17 42 42 H 1.08998 * 110.46109 * 94.75401 * 27 18 17 43 43 H 0.96703 * 113.99816 * 67.80421 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3531 1.1674 -0.0373 5 6 1.3973 2.4524 0.0393 6 7 0.0681 2.4418 -0.0848 7 7 -0.6299 3.5252 -0.0535 8 6 -0.0176 4.7054 0.0973 9 6 -0.7350 5.9111 0.1323 10 6 -0.0669 7.0877 0.2882 11 6 1.3216 7.1155 0.4146 12 6 2.0517 5.9671 0.3854 13 6 1.3979 4.7336 0.2261 14 7 2.0684 3.5795 0.1910 15 6 2.1975 -1.2687 0.0006 16 1 3.2716 -1.0923 0.0564 17 6 1.7273 -2.1702 1.1615 18 7 1.6777 -3.5483 0.6517 19 6 1.2886 -4.6499 1.3660 20 1 0.9831 -4.5451 2.3965 21 6 1.2869 -5.9014 0.7654 22 7 1.6588 -6.0291 -0.4907 23 14 0.7554 -7.4042 1.7395 24 1 -0.6448 -7.2255 2.2005 25 1 0.8421 -8.6095 0.8764 26 1 1.6463 -7.5719 2.9158 27 6 2.1171 -3.5478 -0.7555 28 6 1.8435 -2.1075 -1.2559 29 1 0.7958 -1.9802 -1.5282 30 8 2.6986 -1.7748 -2.3514 31 1 -0.3634 0.1128 -1.0214 32 1 -0.3634 -0.9410 0.4130 33 1 -0.3634 0.8282 0.6085 34 1 -1.8106 5.9061 0.0362 35 1 -0.6215 8.0140 0.3144 36 1 1.8253 8.0630 0.5367 37 1 3.1267 6.0036 0.4841 38 1 2.4333 -2.1064 1.9897 39 1 0.7357 -1.8614 1.4925 40 1 1.6580 -6.9036 -0.9102 41 1 1.5373 -4.2670 -1.3342 42 1 3.1806 -3.7771 -0.8227 43 1 2.5151 -2.2737 -3.1592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047458432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:27 Heat of formation + Delta-G solvation = 84.373236 kcal Electronic energy + Delta-G solvation = -29526.732375 eV Core-core repulsion = 25382.626907 eV Total energy + Delta-G solvation = -4144.105468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.41921 -39.97957 -38.50143 -37.75511 -35.72672 -35.19239 -34.78943 -32.64016 -31.79104 -31.36577 -28.77102 -27.43776 -26.92124 -26.56138 -25.69972 -24.29117 -23.05145 -21.74979 -20.46539 -19.81716 -19.49726 -18.92589 -17.33979 -17.07860 -16.94289 -16.49200 -16.38769 -15.83174 -15.47138 -14.99704 -14.81622 -14.76491 -14.12855 -13.83602 -13.68986 -13.28587 -13.07574 -13.02677 -12.87074 -12.74379 -12.49900 -12.37212 -12.24616 -12.19228 -11.73664 -11.49604 -11.27193 -11.11573 -10.96599 -10.81669 -10.22116 -10.15930 -9.96375 -9.91687 -9.72806 -9.64452 -9.27398 -9.24777 -8.72055 -8.38490 -6.93760 -5.72197 -3.15810 -0.71541 -0.29748 1.16671 1.90569 2.49191 2.82093 3.11359 3.38138 3.42125 3.43124 3.43907 3.47318 3.67509 3.97037 4.16140 4.40265 4.42420 4.53119 4.62898 4.69694 4.95802 5.20033 5.31144 5.33976 5.40016 5.41142 5.43760 5.57683 5.64057 5.69100 5.83855 5.90864 5.94449 6.07468 6.13886 6.18577 6.43236 6.46401 6.59677 6.86165 7.34718 7.38794 7.52706 7.72428 7.80481 8.10260 8.17492 8.28164 9.12565 9.72983 10.35237 11.31434 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.002370 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.395072 B =11809.371181 C =12209.635648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.574 5.574 3 C 0.583 3.417 4 O -0.500 6.500 5 C 0.226 3.774 6 N -0.225 5.225 7 N -0.147 5.147 8 C 0.019 3.981 9 C -0.066 4.066 10 C -0.092 4.092 11 C -0.073 4.073 12 C -0.086 4.086 13 C 0.133 3.867 14 N -0.395 5.395 15 C 0.135 3.865 16 H 0.115 0.885 17 C 0.130 3.870 18 N -0.598 5.598 19 C -0.225 4.225 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.129 3.871 28 C 0.065 3.935 29 H 0.063 0.937 30 O -0.563 6.563 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.034 0.966 39 H 0.038 0.962 40 H 0.254 0.746 41 H 0.113 0.887 42 H 0.026 0.974 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 27.001 -0.618 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.306 5.306 3 C 0.364 3.636 4 O -0.371 6.371 5 C -0.045 4.045 6 N -0.086 5.086 7 N -0.010 5.010 8 C -0.114 4.114 9 C -0.088 4.088 10 C -0.113 4.113 11 C -0.096 4.096 12 C -0.106 4.106 13 C -0.007 4.007 14 N -0.117 5.117 15 C 0.033 3.967 16 H 0.132 0.868 17 C 0.003 3.997 18 N -0.326 5.326 19 C -0.353 4.353 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.748 3.252 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.003 3.997 28 C 0.005 3.995 29 H 0.081 0.919 30 O -0.368 6.368 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.130 0.870 42 H 0.044 0.956 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.129 26.225 -0.335 26.724 hybrid contribution -0.169 -0.390 0.167 0.456 sum -5.298 25.835 -0.168 26.373 Atomic orbital electron populations 1.22421 0.78030 1.04056 1.03051 1.47635 1.08035 1.04795 1.70147 1.17003 0.86273 0.81314 0.79021 1.90820 1.12201 1.85672 1.48442 1.24542 0.89375 0.94990 0.95636 1.74611 1.05863 1.18838 1.09267 1.74560 1.29108 0.94526 1.02822 1.21005 0.93465 0.96279 1.00692 1.20834 1.01171 0.89210 0.97606 1.21245 0.94542 0.98627 0.96887 1.21259 0.94103 0.98837 0.95358 1.20951 1.01688 0.89020 0.98894 1.19784 0.90891 0.93846 0.96138 1.69125 1.38269 0.97252 1.07094 1.22309 0.98081 0.80757 0.95603 0.86750 1.21567 0.98583 0.85866 0.93690 1.44257 1.78066 1.01145 1.09139 1.19036 1.37104 0.84463 0.94671 0.90198 1.24812 1.01484 0.97619 0.96575 1.69740 1.53643 1.22639 1.11058 0.86098 0.78399 0.81960 0.78694 1.21058 1.21528 1.21115 1.22569 0.99254 0.91420 0.86411 1.23744 0.92603 0.97308 0.85881 0.91932 1.86448 1.60677 1.66676 1.22962 0.91993 0.89969 0.88609 0.83115 0.83734 0.83667 0.83037 0.94795 0.94460 0.93502 0.86958 0.95617 0.77828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 8.01 59.84 0.48 1.47 16 2 N -0.57 -10.11 2.89 -172.73 -0.50 -10.60 16 3 C 0.58 10.76 7.70 -12.06 -0.09 10.67 16 4 O -0.50 -10.72 16.25 5.39 0.09 -10.64 16 5 C 0.23 3.64 7.51 -156.56 -1.18 2.46 16 6 N -0.22 -3.24 7.21 32.10 0.23 -3.01 16 7 N -0.15 -1.87 11.68 32.28 0.38 -1.49 16 8 C 0.02 0.20 6.68 -84.71 -0.57 -0.37 16 9 C -0.07 -0.42 10.00 -39.53 -0.40 -0.82 16 10 C -0.09 -0.36 9.95 -39.87 -0.40 -0.76 16 11 C -0.07 -0.31 9.95 -39.89 -0.40 -0.71 16 12 C -0.09 -0.66 10.01 -39.49 -0.40 -1.05 16 13 C 0.13 1.54 6.61 -84.77 -0.56 0.98 16 14 N -0.40 -6.01 10.23 -8.99 -0.09 -6.10 16 15 C 0.14 2.70 3.09 -66.09 -0.20 2.50 16 16 H 0.11 2.51 7.00 -51.93 -0.36 2.15 16 17 C 0.13 2.76 6.76 -3.06 -0.02 2.74 16 18 N -0.60 -15.13 3.39 -170.07 -0.58 -15.71 16 19 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.28 10.09 55.49 0.56 -25.72 16 23 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.13 3.12 5.62 -2.53 -0.01 3.10 16 28 C 0.07 1.31 4.00 -24.58 -0.10 1.21 16 29 H 0.06 1.20 7.34 -51.93 -0.38 0.81 16 30 O -0.56 -10.75 13.47 -35.23 -0.47 -11.23 16 31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.08 1.23 6.19 -51.93 -0.32 0.91 16 33 H 0.10 1.33 5.30 -52.18 -0.28 1.05 16 34 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 0.09 8.06 -52.49 -0.42 -0.33 16 36 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 37 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.75 6.02 -51.93 -0.31 0.44 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.11 2.96 5.87 -51.93 -0.31 2.65 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.38 5.52 9.12 45.56 0.42 5.94 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -34.91 357.37 -8.16 -43.07 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.05 Total: 4.57 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: -4.09 Total: 14.79 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.00 Total: -62.63 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.39 Total: -21.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.91 -8.16 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047458432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.446 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds