Wall clock time and date at job start Wed Apr 1 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00489 * 2 1 4 4 O 1.21280 * 119.99271 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00411 * 180.02562 * 3 2 1 6 6 C 1.50697 * 109.47132 * 180.02562 * 5 3 2 7 7 O 1.21275 * 119.99869 * 359.97438 * 6 5 3 8 8 N 1.34783 * 119.99700 * 180.02562 * 6 5 3 9 9 C 1.46494 * 119.99806 * 174.96614 * 8 6 5 10 10 C 1.53002 * 112.85302 * 65.35704 * 9 8 6 11 11 N 1.46505 * 109.46709 * 49.24994 * 10 9 8 12 12 C 1.34780 * 119.99496 * 174.93116 * 11 10 9 13 13 O 1.21278 * 120.00220 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99587 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47074 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00133 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00168 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99945 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00332 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46919 * 89.99993 * 20 18 16 22 22 H 1.48498 * 109.46999 * 210.00143 * 20 18 16 23 23 H 1.48502 * 109.46724 * 329.99870 * 20 18 16 24 24 C 1.53783 * 113.61616 * 196.55811 * 9 8 6 25 25 C 1.53955 * 87.02116 * 89.22409 * 24 9 8 26 26 C 1.53779 * 113.61097 * 294.16445 * 9 8 6 27 27 H 1.09001 * 109.46477 * 300.00012 * 1 2 3 28 28 H 1.08999 * 109.47068 * 59.99842 * 1 2 3 29 29 H 1.08995 * 109.47147 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00015 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47005 * 59.99358 * 5 3 2 32 32 H 1.09009 * 109.46869 * 299.99911 * 5 3 2 33 33 H 0.97001 * 120.00151 * 354.95872 * 8 6 5 34 34 H 1.08999 * 109.47038 * 289.25000 * 10 9 8 35 35 H 1.08997 * 109.47120 * 169.24685 * 10 9 8 36 36 H 0.96991 * 120.00017 * 355.20924 * 11 10 9 37 37 H 1.09005 * 109.47344 * 300.00329 * 14 12 11 38 38 H 1.09004 * 109.47329 * 60.00424 * 14 12 11 39 39 H 0.97003 * 120.00362 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.61785 * 203.74635 * 24 9 8 41 41 H 1.08998 * 113.60963 * 334.65040 * 24 9 8 42 42 H 1.09003 * 113.54247 * 270.81880 * 25 24 9 43 43 H 1.08999 * 113.66710 * 139.93171 * 25 24 9 44 44 H 1.09002 * 113.61900 * 25.35189 * 26 9 8 45 45 H 1.09005 * 113.61722 * 156.25477 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1483 2.5879 0.0002 7 8 3.3602 3.5097 0.0006 8 7 5.4734 2.8341 -0.0007 9 6 5.9626 4.2106 -0.1113 10 6 5.5875 5.0733 1.0954 11 7 5.9376 4.3655 2.3294 12 6 5.7917 4.9771 3.5215 13 8 5.3709 6.1134 3.5727 14 6 6.1513 4.2488 4.7909 15 16 5.8461 5.3272 6.2122 16 6 6.3379 4.2549 7.5210 17 1 6.6944 3.2599 7.2989 18 6 6.2671 4.6889 8.8375 19 7 5.8322 5.9013 9.1083 20 14 6.7891 3.5523 10.2251 21 1 8.2359 3.7409 10.5015 22 1 6.0062 3.8700 11.4462 23 1 6.5402 2.1426 9.8302 24 6 7.4474 4.3074 -0.5000 25 6 6.9808 4.3009 -1.9671 26 6 5.6442 4.8706 -1.4632 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.0089 0.6534 -0.8907 32 1 4.0096 0.6531 0.8892 33 1 6.1032 2.1000 0.0720 34 1 4.5156 5.2709 1.0815 35 1 6.1316 6.0167 1.0507 36 1 6.2782 3.4583 2.2881 37 1 5.5410 3.3500 4.8795 38 1 7.2051 3.9714 4.7646 39 1 5.7823 6.2045 10.0284 40 1 7.9184 5.2420 -0.1957 41 1 8.0295 3.4287 -0.2222 42 1 6.8964 3.3009 -2.3927 43 1 7.5355 4.9883 -2.6057 44 1 4.7728 4.4462 -1.9620 45 1 5.6214 5.9597 -1.4229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062578766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:03 Heat of formation + Delta-G solvation = -82.259030 kcal Electronic energy + Delta-G solvation = -27651.019324 eV Core-core repulsion = 23602.839338 eV Total energy + Delta-G solvation = -4048.179985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06570 -39.88032 -38.73423 -37.90889 -34.80659 -34.14579 -33.43066 -32.40268 -31.09138 -29.82775 -27.35880 -26.59187 -26.09767 -25.43456 -23.06245 -21.68770 -20.59521 -20.17875 -19.43462 -17.89303 -17.62147 -17.43042 -16.61201 -16.23530 -16.14711 -15.80621 -15.48967 -15.12864 -15.02619 -14.78350 -14.60205 -14.09813 -13.88993 -13.72694 -13.58205 -13.36444 -13.11997 -12.72727 -12.62605 -12.58176 -12.57507 -12.28620 -12.02379 -11.63767 -11.25679 -11.12805 -11.04765 -10.99921 -10.74176 -10.68571 -10.32225 -9.79382 -9.58556 -9.42078 -9.37815 -9.19331 -9.04423 -8.70082 -8.18621 -6.45908 -6.18686 -3.88833 2.34442 2.46596 2.55035 3.06745 3.15678 3.21478 3.23659 3.29646 3.34830 3.76839 4.07777 4.18302 4.22892 4.31772 4.47431 4.50295 4.60005 4.77852 4.80964 4.93714 5.09916 5.16094 5.20583 5.24444 5.34244 5.44075 5.50371 5.53891 5.58045 5.68035 5.73477 5.74950 5.91288 5.93888 6.06010 6.08689 6.16530 6.36499 6.73967 7.10048 7.23241 7.61592 7.81372 7.95286 8.12879 8.37577 8.72905 9.26163 10.88748 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009711 B = 0.002728 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.508294 B =10260.038060 C =12252.052952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.508 3.492 4 O -0.488 6.488 5 C -0.166 4.166 6 C 0.514 3.486 7 O -0.476 6.476 8 N -0.717 5.717 9 C 0.144 3.856 10 C 0.123 3.877 11 N -0.732 5.732 12 C 0.530 3.470 13 O -0.517 6.517 14 C -0.151 4.151 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.133 4.133 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.399 0.601 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.392 0.608 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -16.536 -25.965 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.292 3.708 4 O -0.359 6.359 5 C -0.209 4.209 6 C 0.297 3.703 7 O -0.346 6.346 8 N -0.372 5.372 9 C 0.057 3.943 10 C -0.002 4.002 11 N -0.386 5.386 12 C 0.316 3.684 13 O -0.391 6.391 14 C -0.302 4.302 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.172 4.172 25 C -0.177 4.177 26 C -0.172 4.172 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.233 0.767 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.226 0.774 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.220 -12.982 -25.757 28.869 hybrid contribution 1.556 -3.509 0.912 3.946 sum 0.336 -16.491 -24.845 29.822 Atomic orbital electron populations 1.21515 0.79360 1.02101 1.02545 1.45775 1.07847 1.08403 1.77578 1.20010 0.89168 0.84092 0.77548 1.90906 1.69320 1.30363 1.45284 1.21590 0.95074 0.97628 1.06603 1.19901 0.82257 0.90633 0.77512 1.90899 1.54194 1.45073 1.44462 1.45646 1.06823 1.07721 1.77025 1.21550 0.95250 0.82510 0.95005 1.21584 1.02332 0.94513 0.81804 1.45799 1.69070 1.18123 1.05563 1.20273 0.77183 0.86776 0.84206 1.90705 1.43618 1.18060 1.86689 1.23510 1.04216 1.04385 0.98093 1.85446 1.85858 1.18967 0.92996 1.22865 1.50587 1.02156 0.92745 0.91014 1.24993 0.94866 0.95610 0.98158 1.70019 1.43409 1.16666 1.20151 0.86171 0.78597 0.80251 0.80479 1.20295 1.20760 1.19741 1.23300 0.93979 1.03639 0.96305 1.22879 0.97098 1.01479 0.96216 1.23172 0.98121 1.01224 0.94647 0.92070 0.92281 0.90695 0.76746 0.86171 0.85995 0.76593 0.90185 0.90682 0.77439 0.89523 0.89401 0.92194 0.88229 0.90721 0.90236 0.90958 0.90568 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.74 -4.88 5.71 -67.08 -0.38 -5.26 16 3 C 0.51 5.23 7.82 -10.98 -0.09 5.14 16 4 O -0.49 -8.00 14.18 -18.96 -0.27 -8.26 16 5 C -0.17 -1.04 6.19 -29.04 -0.18 -1.22 16 6 C 0.51 5.33 7.32 -10.98 -0.08 5.25 16 7 O -0.48 -7.73 12.27 -18.95 -0.23 -7.96 16 8 N -0.72 -5.25 4.44 -46.86 -0.21 -5.46 16 9 C 0.14 1.31 0.66 -131.01 -0.09 1.22 16 10 C 0.12 1.67 4.86 -4.04 -0.02 1.65 16 11 N -0.73 -10.57 5.44 -60.29 -0.33 -10.89 16 12 C 0.53 10.58 7.85 -10.99 -0.09 10.49 16 13 O -0.52 -12.62 15.86 5.56 0.09 -12.53 16 14 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.49 9.50 30.94 0.29 -15.20 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 20 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.13 -0.89 7.38 -25.83 -0.19 -1.08 16 25 C -0.14 -0.86 8.00 -25.82 -0.21 -1.07 16 26 C -0.13 -1.18 7.03 -25.92 -0.18 -1.36 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.40 1.09 8.83 -40.82 -0.36 0.73 16 31 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.12 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.40 1.48 8.66 -40.82 -0.35 1.13 16 34 H 0.08 1.39 6.99 -51.93 -0.36 1.02 16 35 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 36 H 0.39 4.38 7.97 -40.82 -0.33 4.05 16 37 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.10 0.72 7.97 -51.93 -0.41 0.30 16 41 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.80 7.55 -51.93 -0.39 0.40 16 45 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -42.78 393.02 -8.78 -51.56 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.81 Total: 1.93 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.06 Total: 4.13 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.19 Total: -47.48 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.41 Total: -28.76 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -42.78 -8.78 -51.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.700 kcal (2) G-P(sol) polarization free energy of solvation -42.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds