Wall clock time and date at job start Wed Apr 1 2020 02:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00489 * 2 1 4 4 O 1.21280 * 119.99271 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00411 * 180.02562 * 3 2 1 6 6 C 1.50697 * 109.47132 * 180.02562 * 5 3 2 7 7 O 1.21275 * 119.99869 * 359.97438 * 6 5 3 8 8 N 1.34783 * 119.99700 * 180.02562 * 6 5 3 9 9 C 1.46494 * 119.99806 * 174.96614 * 8 6 5 10 10 C 1.53002 * 112.85302 * 65.35704 * 9 8 6 11 11 N 1.46505 * 109.46709 * 49.24994 * 10 9 8 12 12 C 1.34780 * 119.99496 * 174.93116 * 11 10 9 13 13 O 1.21278 * 120.00220 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99587 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47074 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00133 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00168 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99945 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00332 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46919 * 89.99993 * 20 18 16 22 22 H 1.48498 * 109.46999 * 210.00143 * 20 18 16 23 23 H 1.48502 * 109.46724 * 329.99870 * 20 18 16 24 24 C 1.53783 * 113.61616 * 196.55811 * 9 8 6 25 25 C 1.53955 * 87.02116 * 89.22409 * 24 9 8 26 26 C 1.53779 * 113.61097 * 294.16445 * 9 8 6 27 27 H 1.09001 * 109.46477 * 300.00012 * 1 2 3 28 28 H 1.08999 * 109.47068 * 59.99842 * 1 2 3 29 29 H 1.08995 * 109.47147 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00015 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47005 * 59.99358 * 5 3 2 32 32 H 1.09009 * 109.46869 * 299.99911 * 5 3 2 33 33 H 0.97001 * 120.00151 * 354.95872 * 8 6 5 34 34 H 1.08999 * 109.47038 * 289.25000 * 10 9 8 35 35 H 1.08997 * 109.47120 * 169.24685 * 10 9 8 36 36 H 0.96991 * 120.00017 * 355.20924 * 11 10 9 37 37 H 1.09005 * 109.47344 * 300.00329 * 14 12 11 38 38 H 1.09004 * 109.47329 * 60.00424 * 14 12 11 39 39 H 0.97003 * 120.00362 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.61785 * 203.74635 * 24 9 8 41 41 H 1.08998 * 113.60963 * 334.65040 * 24 9 8 42 42 H 1.09003 * 113.54247 * 270.81880 * 25 24 9 43 43 H 1.08999 * 113.66710 * 139.93171 * 25 24 9 44 44 H 1.09002 * 113.61900 * 25.35189 * 26 9 8 45 45 H 1.09005 * 113.61722 * 156.25477 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1483 2.5879 0.0002 7 8 3.3602 3.5097 0.0006 8 7 5.4734 2.8341 -0.0007 9 6 5.9626 4.2106 -0.1113 10 6 5.5875 5.0733 1.0954 11 7 5.9376 4.3655 2.3294 12 6 5.7917 4.9771 3.5215 13 8 5.3709 6.1134 3.5727 14 6 6.1513 4.2488 4.7909 15 16 5.8461 5.3272 6.2122 16 6 6.3379 4.2549 7.5210 17 1 6.6944 3.2599 7.2989 18 6 6.2671 4.6889 8.8375 19 7 5.8322 5.9013 9.1083 20 14 6.7891 3.5523 10.2251 21 1 8.2359 3.7409 10.5015 22 1 6.0062 3.8700 11.4462 23 1 6.5402 2.1426 9.8302 24 6 7.4474 4.3074 -0.5000 25 6 6.9808 4.3009 -1.9671 26 6 5.6442 4.8706 -1.4632 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.0089 0.6534 -0.8907 32 1 4.0096 0.6531 0.8892 33 1 6.1032 2.1000 0.0720 34 1 4.5156 5.2709 1.0815 35 1 6.1316 6.0167 1.0507 36 1 6.2782 3.4583 2.2881 37 1 5.5410 3.3500 4.8795 38 1 7.2051 3.9714 4.7646 39 1 5.7823 6.2045 10.0284 40 1 7.9184 5.2420 -0.1957 41 1 8.0295 3.4287 -0.2222 42 1 6.8964 3.3009 -2.3927 43 1 7.5355 4.9883 -2.6057 44 1 4.7728 4.4462 -1.9620 45 1 5.6214 5.9597 -1.4229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062578766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:02 Heat of formation + Delta-G solvation = -118.049944 kcal Electronic energy + Delta-G solvation = -27652.571334 eV Core-core repulsion = 23602.839338 eV Total energy + Delta-G solvation = -4049.731996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.87343 -40.77290 -40.14896 -38.73225 -35.55927 -35.50590 -34.58696 -34.25273 -31.82215 -31.28434 -28.48912 -27.63021 -27.23861 -26.73315 -23.92185 -22.44149 -21.77613 -21.18918 -20.25129 -19.81962 -18.34139 -18.13834 -17.91671 -17.51043 -16.91829 -16.88223 -16.73082 -16.45779 -16.37645 -15.94689 -15.72732 -15.32136 -15.00992 -14.72037 -14.62606 -14.45354 -14.43166 -14.02419 -13.77652 -13.42550 -13.26381 -13.17091 -13.07996 -12.93221 -12.88253 -12.67817 -12.57539 -11.88116 -11.82034 -11.71798 -11.37216 -11.14331 -11.12116 -10.99987 -10.49560 -10.27795 -10.11851 -10.09329 -9.99124 -8.68510 -8.34356 -6.13618 1.25727 1.43292 1.46685 1.57025 1.59579 1.65577 1.77203 1.83808 2.25341 2.28241 2.56017 2.99754 3.30722 3.39836 3.55592 3.64342 3.74961 3.91223 3.98997 4.07018 4.26862 4.37969 4.41035 4.43968 4.46140 4.47881 4.57635 4.60923 4.76809 4.82219 4.84498 4.94904 5.05928 5.12024 5.13432 5.26786 5.40093 5.41360 5.47571 5.69489 6.19700 6.48397 6.58952 6.66174 7.06263 7.23424 7.33265 7.47064 8.75112 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009711 B = 0.002728 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.508294 B =10260.038060 C =12252.052952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.495 3.505 4 O -0.563 6.563 5 C -0.153 4.153 6 C 0.503 3.497 7 O -0.544 6.544 8 N -0.696 5.696 9 C 0.143 3.857 10 C 0.125 3.875 11 N -0.700 5.700 12 C 0.528 3.472 13 O -0.571 6.571 14 C -0.124 4.124 15 S -0.159 6.159 16 C -0.544 4.544 17 H 0.086 0.914 18 C 0.010 3.990 19 N -0.914 5.914 20 Si 1.002 2.998 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.255 1.255 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.143 4.143 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.422 0.578 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.423 0.577 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.414 0.586 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.271 0.729 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -21.393 -26.909 34.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.281 3.719 4 O -0.440 6.440 5 C -0.195 4.195 6 C 0.289 3.711 7 O -0.419 6.419 8 N -0.353 5.353 9 C 0.055 3.945 10 C 0.000 4.000 11 N -0.354 5.354 12 C 0.314 3.686 13 O -0.449 6.449 14 C -0.275 4.275 15 S 0.068 5.932 16 C -0.692 4.692 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.824 3.176 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.179 1.179 24 C -0.159 4.159 25 C -0.158 4.158 26 C -0.182 4.182 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.260 0.740 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.251 0.749 37 H 0.125 0.875 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.757 -17.991 -26.752 32.287 hybrid contribution 0.583 -2.023 1.071 2.362 sum 2.340 -20.014 -25.681 32.642 Atomic orbital electron populations 1.21585 0.79593 1.04062 1.00743 1.45674 1.07909 1.08590 1.75622 1.20840 0.91041 0.83781 0.76217 1.90891 1.71043 1.33103 1.48925 1.21665 0.91888 0.95322 1.10621 1.20734 0.82485 0.91802 0.76053 1.90904 1.56051 1.47423 1.47480 1.45459 1.06520 1.07629 1.75686 1.21526 0.97579 0.82857 0.92504 1.21605 0.99585 0.95728 0.83073 1.45473 1.66977 1.18721 1.04212 1.20223 0.76875 0.86131 0.85396 1.90694 1.46347 1.20455 1.87454 1.23325 1.06292 1.02925 0.94940 1.85721 1.86691 1.23208 0.97565 1.23199 1.50558 1.02433 0.92967 0.89607 1.26198 0.94516 0.97359 1.01341 1.70201 1.44816 1.19082 1.20913 0.84901 0.78399 0.78239 0.76096 1.19108 1.20521 1.17919 1.23270 0.91751 1.04785 0.96130 1.22829 0.94403 1.02415 0.96141 1.23214 0.99331 1.00778 0.94847 0.94451 0.93694 0.86714 0.74044 0.81259 0.82211 0.73729 0.94574 0.91383 0.74934 0.87545 0.86504 0.92028 0.88755 0.87711 0.88315 0.89986 0.92575 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.70 127.77 1.37 2.43 16 2 N -0.72 -8.15 5.71 -484.53 -2.77 -10.91 16 3 C 0.50 9.80 7.82 87.66 0.69 10.49 16 4 O -0.56 -19.62 14.18 20.41 0.29 -19.33 16 5 C -0.15 -1.41 6.19 29.10 0.18 -1.23 16 6 C 0.50 9.83 7.32 87.65 0.64 10.47 16 7 O -0.54 -18.64 12.27 20.43 0.25 -18.39 16 8 N -0.70 -8.24 4.44 -420.55 -1.87 -10.11 16 9 C 0.14 2.41 0.66 4.13 0.00 2.41 16 10 C 0.13 3.50 4.86 86.38 0.42 3.92 16 11 N -0.70 -19.56 5.44 -463.05 -2.52 -22.08 16 12 C 0.53 21.21 7.85 87.66 0.69 21.90 16 13 O -0.57 -29.26 15.86 -3.02 -0.05 -29.31 16 14 C -0.12 -5.06 6.16 71.23 0.44 -4.62 16 15 S -0.16 -9.14 20.57 -56.49 -1.16 -10.30 16 16 C -0.54 -31.38 9.50 67.95 0.65 -30.73 16 17 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 18 C 0.01 0.59 5.49 84.86 0.47 1.06 16 19 N -0.91 -57.24 13.22 21.65 0.29 -56.96 16 20 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 24 C -0.12 -1.20 7.38 31.18 0.23 -0.97 16 25 C -0.12 -1.12 8.00 31.18 0.25 -0.87 16 26 C -0.14 -2.51 7.03 31.12 0.22 -2.29 16 27 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.42 0.75 8.83 -92.71 -0.82 -0.06 16 31 H 0.17 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.16 0.30 8.14 -2.38 -0.02 0.29 16 33 H 0.42 0.93 8.66 -92.71 -0.80 0.13 16 34 H 0.04 1.36 6.99 -2.39 -0.02 1.34 16 35 H 0.07 1.99 7.95 -2.39 -0.02 1.97 16 36 H 0.41 7.94 7.97 -92.71 -0.74 7.20 16 37 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 38 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 39 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.09 1.11 7.97 -2.39 -0.02 1.09 16 41 H 0.10 0.47 8.09 -2.39 -0.02 0.45 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 1.22 7.55 -2.39 -0.02 1.20 16 45 H 0.08 1.59 8.10 -2.38 -0.02 1.57 16 Total: -1.00 -104.75 393.02 -0.60 -105.35 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -1.32 Total: 14.35 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.23 Total: 11.97 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -6.87 Total: -100.06 kcal Atomic # 8 Polarization: -67.52 SS G_CDS: 0.49 Total: -67.03 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.16 Total: -10.30 kcal Total: -104.75 -0.60 -105.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.700 kcal (2) G-P(sol) polarization free energy of solvation -104.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds