Wall clock time and date at job start Wed Apr 1 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99619 * 2 1 4 4 O 1.21274 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99750 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46978 * 179.97438 * 5 3 2 7 7 O 1.21277 * 119.99882 * 0.02562 * 6 5 3 8 8 N 1.34770 * 119.99779 * 179.97438 * 6 5 3 9 9 C 1.46504 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.47083 * 174.96292 * 9 8 6 11 11 N 1.46493 * 112.84911 * 311.52266 * 10 9 8 12 12 C 1.34777 * 120.00129 * 294.02337 * 11 10 9 13 13 O 1.21281 * 120.00173 * 354.96852 * 12 11 10 14 14 C 1.50708 * 120.00141 * 174.97223 * 12 11 10 15 15 S 1.80996 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99884 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00091 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99924 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47357 * 90.00202 * 20 18 16 22 22 H 1.48499 * 109.47466 * 209.99939 * 20 18 16 23 23 H 1.48502 * 109.47444 * 330.00025 * 20 18 16 24 24 C 1.53775 * 113.68859 * 82.79138 * 10 9 8 25 25 C 1.53782 * 87.08260 * 139.99290 * 24 10 9 26 26 C 1.53778 * 113.61271 * 180.32315 * 10 9 8 27 27 H 1.08997 * 109.47200 * 59.99927 * 1 2 3 28 28 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47181 * 299.99905 * 1 2 3 30 30 H 0.96995 * 120.00598 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46658 * 60.00756 * 5 3 2 32 32 H 1.08997 * 109.47368 * 300.00316 * 5 3 2 33 33 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46965 * 54.96849 * 9 8 6 35 35 H 1.08994 * 109.47187 * 294.96475 * 9 8 6 36 36 H 0.97000 * 120.00227 * 114.01862 * 11 10 9 37 37 H 1.09000 * 109.46675 * 59.99418 * 14 12 11 38 38 H 1.09000 * 109.46876 * 299.99651 * 14 12 11 39 39 H 0.96997 * 120.00355 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.61589 * 254.54306 * 24 10 9 41 41 H 1.09000 * 113.61764 * 25.44064 * 24 10 9 42 42 H 1.08996 * 113.61346 * 220.02295 * 25 24 10 43 43 H 1.08999 * 113.61492 * 89.11500 * 25 24 10 44 44 H 1.08995 * 113.61919 * 334.48913 * 26 10 9 45 45 H 1.09010 * 113.61004 * 105.38860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1481 2.5882 -0.0002 7 8 3.3600 3.5099 -0.0006 8 7 5.4731 2.8345 0.0007 9 6 5.9614 4.2157 0.0005 10 6 7.4862 4.2177 0.1283 11 7 7.9676 3.3539 1.2091 12 6 7.6829 3.6565 2.4912 13 8 7.1075 4.6906 2.7569 14 6 8.0797 2.7100 3.5948 15 16 7.5636 3.3927 5.1897 16 6 8.1352 2.1205 6.2664 17 1 8.6349 1.2535 5.8604 18 6 7.9430 2.2325 7.6365 19 7 8.3704 1.2824 8.4409 20 14 7.0780 3.7318 8.3388 21 1 5.6170 3.4742 8.4058 22 1 7.5949 4.0078 9.7032 23 1 7.3341 4.9054 7.4657 24 6 8.2183 4.0005 -1.2064 25 6 9.2270 5.0615 -0.7357 26 6 8.1010 5.6271 0.1459 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8399 -0.0004 31 1 4.0095 0.6534 -0.8892 32 1 4.0089 0.6537 0.8908 33 1 6.1035 2.0972 0.0014 34 1 5.5257 4.7552 0.8415 35 1 5.6743 4.7025 -0.9315 36 1 8.4911 2.5640 1.0020 37 1 9.1617 2.5786 3.5892 38 1 7.5957 1.7460 3.4382 39 1 8.2359 1.3605 9.3983 40 1 8.6490 3.0047 -1.3112 41 1 7.6382 4.3055 -2.0774 42 1 9.5461 5.7413 -1.5256 43 1 10.0611 4.6495 -0.1678 44 1 7.4888 6.3769 -0.3552 45 1 8.4371 5.9446 1.1331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062842780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:15 Heat of formation + Delta-G solvation = -83.360078 kcal Electronic energy + Delta-G solvation = -27765.544800 eV Core-core repulsion = 23717.317069 eV Total energy + Delta-G solvation = -4048.227730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84223 -40.16374 -38.62461 -37.90530 -34.82482 -34.33965 -33.14889 -32.46596 -31.36307 -29.44110 -27.92179 -26.40142 -26.01146 -25.63922 -23.05422 -21.33962 -20.84767 -20.30724 -19.27154 -17.92424 -17.60057 -17.50901 -16.51301 -16.25843 -16.14073 -15.77154 -15.51234 -15.18140 -15.03652 -14.87684 -14.66359 -14.18448 -13.75299 -13.67620 -13.60313 -13.44313 -13.12610 -12.82087 -12.80065 -12.56030 -12.52578 -12.30830 -12.07513 -11.74498 -11.29729 -11.15605 -11.03761 -11.01265 -10.64386 -10.56895 -10.27570 -9.87499 -9.51721 -9.50962 -9.34258 -9.06455 -9.03408 -9.00785 -8.52564 -6.94658 -6.32002 -4.03748 2.45796 2.61181 2.70739 2.72724 2.90795 3.19468 3.32418 3.36484 3.49622 3.59466 4.12518 4.30591 4.31086 4.38817 4.50384 4.61732 4.68355 4.74305 4.88131 4.95083 5.02898 5.07427 5.09890 5.25808 5.31876 5.38523 5.43473 5.50479 5.54854 5.62606 5.69141 5.81124 5.89258 5.93370 6.01507 6.04055 6.14147 6.34303 6.60034 7.19859 7.41533 7.52428 7.90952 8.05421 8.27314 8.37638 8.44456 9.14489 10.77147 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007535 B = 0.003480 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.279703 B = 8044.767514 C =10886.339223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.510 3.490 4 O -0.491 6.491 5 C -0.166 4.166 6 C 0.511 3.489 7 O -0.495 6.495 8 N -0.726 5.726 9 C 0.124 3.876 10 C 0.143 3.857 11 N -0.719 5.719 12 C 0.534 3.466 13 O -0.506 6.506 14 C -0.124 4.124 15 S -0.139 6.139 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.097 3.903 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.135 4.135 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.400 0.600 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.396 0.604 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -4.542 -24.390 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.294 3.706 4 O -0.362 6.362 5 C -0.209 4.209 6 C 0.295 3.705 7 O -0.367 6.367 8 N -0.379 5.379 9 C -0.001 4.001 10 C 0.055 3.945 11 N -0.374 5.374 12 C 0.320 3.680 13 O -0.379 6.379 14 C -0.275 4.275 15 S 0.088 5.912 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.517 5.517 20 Si 0.680 3.320 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.173 4.173 25 C -0.177 4.177 26 C -0.173 4.173 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.233 0.767 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.230 0.770 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.360 -1.377 -23.740 24.376 hybrid contribution 1.239 -2.179 0.267 2.521 sum -4.122 -3.556 -23.473 24.096 Atomic orbital electron populations 1.21503 0.79489 1.02063 1.02425 1.45784 1.07785 1.08477 1.77578 1.20035 0.89231 0.84009 0.77320 1.90878 1.69390 1.30448 1.45525 1.21588 0.94873 0.97795 1.06654 1.19888 0.82431 0.90574 0.77645 1.90871 1.54378 1.45356 1.46065 1.45758 1.06573 1.08854 1.76728 1.21632 0.92276 0.83177 1.02974 1.21483 0.91891 0.93305 0.87796 1.45676 1.57645 1.29145 1.04967 1.20267 0.78286 0.86892 0.82598 1.90718 1.39547 1.24972 1.82614 1.23277 1.04988 1.01411 0.97781 1.84881 1.78467 1.31855 0.96034 1.22305 1.44374 1.06835 0.93469 0.89434 1.24702 0.94281 0.96366 0.95876 1.69931 1.44804 1.32698 1.04248 0.86752 0.80760 0.84487 0.79969 1.19186 1.19908 1.15912 1.23265 0.98035 1.00221 0.95804 1.22834 0.97023 0.98250 0.99554 1.23176 0.97138 0.95289 1.01738 0.92340 0.90704 0.92171 0.76653 0.86240 0.85853 0.77041 0.89741 0.90936 0.76528 0.88600 0.88674 0.91917 0.90827 0.88628 0.91108 0.89949 0.89169 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.85 0.64 1.29 16 2 N -0.74 -5.76 5.71 -67.08 -0.38 -6.14 16 3 C 0.51 6.00 7.82 -10.98 -0.09 5.92 16 4 O -0.49 -8.65 14.18 -18.95 -0.27 -8.92 16 5 C -0.17 -1.41 6.19 -29.03 -0.18 -1.59 16 6 C 0.51 6.66 7.82 -10.99 -0.09 6.58 16 7 O -0.49 -9.26 14.17 -18.96 -0.27 -9.53 16 8 N -0.73 -7.54 5.38 -60.29 -0.32 -7.86 16 9 C 0.12 1.48 4.93 -4.03 -0.02 1.46 16 10 C 0.14 1.39 0.63 -131.01 -0.08 1.31 16 11 N -0.72 -7.60 4.53 -46.86 -0.21 -7.81 16 12 C 0.53 8.60 7.40 -10.98 -0.08 8.52 16 13 O -0.51 -10.24 13.86 5.56 0.08 -10.16 16 14 C -0.12 -2.23 6.16 36.01 0.22 -2.01 16 15 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 16 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 17 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 20 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 24 C -0.14 -0.88 7.37 -25.92 -0.19 -1.07 16 25 C -0.14 -1.06 7.99 -25.92 -0.21 -1.27 16 26 C -0.13 -1.40 6.95 -25.92 -0.18 -1.58 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 31 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 2.86 8.11 -40.82 -0.33 2.53 16 34 H 0.08 1.39 7.34 -51.93 -0.38 1.00 16 35 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.40 2.95 8.67 -40.82 -0.35 2.60 16 37 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 38 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.37 8.09 -51.93 -0.42 -0.06 16 41 H 0.10 0.56 7.96 -51.93 -0.41 0.14 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.08 1.14 7.19 -51.92 -0.37 0.76 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -41.06 390.41 -8.32 -49.37 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.85 Total: 3.23 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.04 Total: 5.80 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.14 Total: -47.33 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.46 Total: -28.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -41.06 -8.32 -49.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062842780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.989 kcal (2) G-P(sol) polarization free energy of solvation -41.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds