Wall clock time and date at job start Wed Apr 1 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99619 * 2 1 4 4 O 1.21274 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99750 * 179.97438 * 3 2 1 6 6 C 1.50701 * 109.46978 * 179.97438 * 5 3 2 7 7 O 1.21277 * 119.99882 * 0.02562 * 6 5 3 8 8 N 1.34770 * 119.99779 * 179.97438 * 6 5 3 9 9 C 1.46504 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.47083 * 174.96292 * 9 8 6 11 11 N 1.46493 * 112.84911 * 311.52266 * 10 9 8 12 12 C 1.34777 * 120.00129 * 294.02337 * 11 10 9 13 13 O 1.21281 * 120.00173 * 354.96852 * 12 11 10 14 14 C 1.50708 * 120.00141 * 174.97223 * 12 11 10 15 15 S 1.80996 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99884 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00091 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99924 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47357 * 90.00202 * 20 18 16 22 22 H 1.48499 * 109.47466 * 209.99939 * 20 18 16 23 23 H 1.48502 * 109.47444 * 330.00025 * 20 18 16 24 24 C 1.53775 * 113.68859 * 82.79138 * 10 9 8 25 25 C 1.53782 * 87.08260 * 139.99290 * 24 10 9 26 26 C 1.53778 * 113.61271 * 180.32315 * 10 9 8 27 27 H 1.08997 * 109.47200 * 59.99927 * 1 2 3 28 28 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47181 * 299.99905 * 1 2 3 30 30 H 0.96995 * 120.00598 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46658 * 60.00756 * 5 3 2 32 32 H 1.08997 * 109.47368 * 300.00316 * 5 3 2 33 33 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46965 * 54.96849 * 9 8 6 35 35 H 1.08994 * 109.47187 * 294.96475 * 9 8 6 36 36 H 0.97000 * 120.00227 * 114.01862 * 11 10 9 37 37 H 1.09000 * 109.46675 * 59.99418 * 14 12 11 38 38 H 1.09000 * 109.46876 * 299.99651 * 14 12 11 39 39 H 0.96997 * 120.00355 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.61589 * 254.54306 * 24 10 9 41 41 H 1.09000 * 113.61764 * 25.44064 * 24 10 9 42 42 H 1.08996 * 113.61346 * 220.02295 * 25 24 10 43 43 H 1.08999 * 113.61492 * 89.11500 * 25 24 10 44 44 H 1.08995 * 113.61919 * 334.48913 * 26 10 9 45 45 H 1.09010 * 113.61004 * 105.38860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1481 2.5882 -0.0002 7 8 3.3600 3.5099 -0.0006 8 7 5.4731 2.8345 0.0007 9 6 5.9614 4.2157 0.0005 10 6 7.4862 4.2177 0.1283 11 7 7.9676 3.3539 1.2091 12 6 7.6829 3.6565 2.4912 13 8 7.1075 4.6906 2.7569 14 6 8.0797 2.7100 3.5948 15 16 7.5636 3.3927 5.1897 16 6 8.1352 2.1205 6.2664 17 1 8.6349 1.2535 5.8604 18 6 7.9430 2.2325 7.6365 19 7 8.3704 1.2824 8.4409 20 14 7.0780 3.7318 8.3388 21 1 5.6170 3.4742 8.4058 22 1 7.5949 4.0078 9.7032 23 1 7.3341 4.9054 7.4657 24 6 8.2183 4.0005 -1.2064 25 6 9.2270 5.0615 -0.7357 26 6 8.1010 5.6271 0.1459 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8399 -0.0004 31 1 4.0095 0.6534 -0.8892 32 1 4.0089 0.6537 0.8908 33 1 6.1035 2.0972 0.0014 34 1 5.5257 4.7552 0.8415 35 1 5.6743 4.7025 -0.9315 36 1 8.4911 2.5640 1.0020 37 1 9.1617 2.5786 3.5892 38 1 7.5957 1.7460 3.4382 39 1 8.2359 1.3605 9.3983 40 1 8.6490 3.0047 -1.3112 41 1 7.6382 4.3055 -2.0774 42 1 9.5461 5.7413 -1.5256 43 1 10.0611 4.6495 -0.1678 44 1 7.4888 6.3769 -0.3552 45 1 8.4371 5.9446 1.1331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062842780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:14 Heat of formation + Delta-G solvation = -117.572067 kcal Electronic energy + Delta-G solvation = -27767.028343 eV Core-core repulsion = 23717.317069 eV Total energy + Delta-G solvation = -4049.711274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80565 -41.10961 -39.65239 -39.00248 -35.68900 -35.30499 -34.68072 -34.29534 -32.17624 -30.75827 -28.86097 -27.84656 -27.08494 -26.70619 -23.91386 -22.33931 -21.82111 -21.24538 -20.21445 -19.87536 -18.41005 -18.40316 -17.85934 -17.17750 -17.10082 -16.98004 -16.67444 -16.57289 -16.20563 -15.97319 -15.71223 -15.49149 -15.08564 -14.83315 -14.64156 -14.48069 -14.41959 -14.06888 -13.81442 -13.59824 -13.35731 -13.23592 -13.07580 -13.04940 -12.87198 -12.71340 -12.57768 -11.91867 -11.84959 -11.80327 -11.35293 -11.23960 -11.18560 -10.80492 -10.56256 -10.50526 -10.10146 -10.07813 -10.04799 -8.99196 -8.52753 -6.21959 0.98421 1.28741 1.45006 1.52945 1.60636 1.62132 1.73601 1.89047 2.18328 2.23585 2.58342 2.72715 2.86038 3.39363 3.54363 3.66546 3.71533 3.88153 3.98266 4.06804 4.26701 4.35543 4.40604 4.42742 4.48374 4.50870 4.52975 4.61592 4.78426 4.84018 4.88946 4.94878 5.08763 5.13895 5.15398 5.27248 5.44957 5.47028 5.67825 5.70473 6.11198 6.51797 6.55820 6.62203 6.93768 7.27037 7.28775 7.41744 8.59407 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007535 B = 0.003480 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.279703 B = 8044.767514 C =10886.339223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.499 3.501 4 O -0.562 6.562 5 C -0.153 4.153 6 C 0.500 3.500 7 O -0.562 6.562 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.139 3.861 11 N -0.690 5.690 12 C 0.538 3.462 13 O -0.553 6.553 14 C -0.108 4.108 15 S -0.186 6.186 16 C -0.523 4.523 17 H 0.067 0.933 18 C 0.049 3.951 19 N -0.915 5.915 20 Si 0.908 3.092 21 H -0.267 1.267 22 H -0.259 1.259 23 H -0.240 1.240 24 C -0.110 4.110 25 C -0.130 4.130 26 C -0.149 4.149 27 H 0.047 0.953 28 H 0.115 0.885 29 H 0.038 0.962 30 H 0.422 0.578 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.416 0.584 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.422 0.578 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.276 0.724 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 -6.856 -27.039 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.284 3.716 4 O -0.439 6.439 5 C -0.195 4.195 6 C 0.286 3.714 7 O -0.439 6.439 8 N -0.362 5.362 9 C 0.003 3.997 10 C 0.052 3.948 11 N -0.345 5.345 12 C 0.323 3.677 13 O -0.430 6.430 14 C -0.259 4.259 15 S 0.040 5.960 16 C -0.670 4.670 17 H 0.085 0.915 18 C -0.156 4.156 19 N -0.553 5.553 20 Si 0.730 3.270 21 H -0.192 1.192 22 H -0.183 1.183 23 H -0.164 1.164 24 C -0.148 4.148 25 C -0.167 4.167 26 C -0.188 4.188 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.190 0.810 32 H 0.171 0.829 33 H 0.253 0.747 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.261 0.739 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.864 -3.821 -26.428 26.981 hybrid contribution 0.815 -1.517 0.962 1.972 sum -3.049 -5.338 -25.466 26.198 Atomic orbital electron populations 1.21611 0.79322 1.04153 1.00886 1.45676 1.08069 1.08470 1.75512 1.20721 0.90760 0.83881 0.76209 1.90862 1.70934 1.33081 1.49049 1.21651 0.92374 0.95107 1.10400 1.20777 0.82506 0.91955 0.76197 1.90857 1.56123 1.47753 1.49122 1.45618 1.06378 1.08844 1.75400 1.21474 0.93442 0.83688 1.01092 1.21648 0.90661 0.93151 0.89365 1.45328 1.56351 1.29634 1.03199 1.19964 0.77971 0.85812 0.83928 1.90727 1.41938 1.26811 1.83513 1.23263 1.06232 1.02231 0.94175 1.84929 1.78961 1.31918 1.00175 1.22439 1.43499 1.06864 0.94222 0.91457 1.25457 0.95058 0.98662 0.96461 1.69996 1.46190 1.34307 1.04827 0.85963 0.79707 0.81500 0.79790 1.19173 1.18323 1.16405 1.23221 0.96474 1.01582 0.93482 1.22809 0.96235 0.98578 0.99087 1.23262 0.99004 0.95863 1.00628 0.93450 0.86675 0.94313 0.74046 0.81010 0.82940 0.74723 0.95096 0.90210 0.73914 0.86685 0.86472 0.91414 0.87681 0.87098 0.89592 0.89883 0.88983 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.70 127.77 1.37 2.52 16 2 N -0.72 -9.76 5.71 -484.52 -2.77 -12.53 16 3 C 0.50 11.32 7.82 87.66 0.69 12.00 16 4 O -0.56 -20.76 14.18 20.43 0.29 -20.47 16 5 C -0.15 -2.15 6.19 29.10 0.18 -1.97 16 6 C 0.50 12.63 7.82 87.66 0.69 13.32 16 7 O -0.56 -22.06 14.17 20.42 0.29 -21.77 16 8 N -0.71 -13.31 5.38 -463.05 -2.49 -15.80 16 9 C 0.13 3.00 4.93 86.38 0.43 3.43 16 10 C 0.14 2.42 0.63 4.13 0.00 2.43 16 11 N -0.69 -12.72 4.53 -420.54 -1.91 -14.62 16 12 C 0.54 16.74 7.40 87.66 0.65 17.39 16 13 O -0.55 -22.90 13.86 -3.03 -0.04 -22.95 16 14 C -0.11 -3.72 6.16 71.24 0.44 -3.28 16 15 S -0.19 -9.27 18.55 -56.49 -1.05 -10.31 16 16 C -0.52 -29.70 10.04 67.96 0.68 -29.02 16 17 H 0.07 3.97 8.03 -2.91 -0.02 3.95 16 18 C 0.05 2.86 5.50 84.86 0.47 3.33 16 19 N -0.92 -55.01 13.97 21.65 0.30 -54.71 16 20 Si 0.91 45.42 27.74 68.60 1.90 47.32 16 21 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.24 -12.11 6.74 99.48 0.67 -11.44 16 24 C -0.11 -0.92 7.37 31.12 0.23 -0.69 16 25 C -0.13 -1.55 7.99 31.12 0.25 -1.31 16 26 C -0.15 -2.99 6.95 31.12 0.22 -2.78 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.42 1.86 8.83 -92.71 -0.82 1.04 16 31 H 0.17 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.42 4.30 8.11 -92.71 -0.75 3.55 16 34 H 0.03 1.07 7.34 -2.39 -0.02 1.06 16 35 H 0.08 1.74 7.94 -2.39 -0.02 1.72 16 36 H 0.42 4.26 8.67 -92.71 -0.80 3.46 16 37 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 38 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.10 0.33 8.09 -2.39 -0.02 0.32 16 41 H 0.11 0.73 7.96 -2.39 -0.02 0.71 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 45 H 0.05 1.31 7.19 -2.38 -0.02 1.30 16 Total: -1.00 -99.02 390.41 -0.56 -99.58 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -1.37 Total: 10.89 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.28 Total: 15.36 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -6.86 Total: -97.65 kcal Atomic # 8 Polarization: -65.73 SS G_CDS: 0.54 Total: -65.19 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.05 Total: -10.31 kcal Total: -99.02 -0.56 -99.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062842780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.988 kcal (2) G-P(sol) polarization free energy of solvation -99.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds