Wall clock time and date at job start Wed Apr 1 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 119.99942 * 2 1 4 4 O 1.21281 * 120.00088 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00026 * 0.02562 * 3 2 1 6 6 S 1.81000 * 109.47062 * 179.97438 * 5 3 2 7 7 C 1.76199 * 100.00151 * 179.97438 * 6 5 3 8 8 H 1.08002 * 119.99604 * 0.02562 * 7 6 5 9 9 C 1.38794 * 120.00208 * 180.02562 * 7 6 5 10 10 N 1.31632 * 120.00135 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99985 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.46988 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46822 * 120.00041 * 11 9 7 14 14 H 1.48496 * 109.46931 * 239.99880 * 11 9 7 15 15 C 1.46499 * 119.99850 * 180.02562 * 2 1 3 16 16 H 1.09005 * 108.31629 * 177.61406 * 15 2 1 17 17 C 1.52563 * 108.51402 * 295.23019 * 15 2 1 18 18 C 1.50884 * 109.36209 * 206.26734 * 17 15 2 19 19 C 1.53596 * 109.95456 * 268.02635 * 18 17 15 20 20 N 1.47602 * 112.34248 * 40.82605 * 19 18 17 21 21 C 1.34775 * 118.64928 * 222.03784 * 20 19 18 22 22 O 1.21349 * 119.99485 * 353.75660 * 21 20 19 23 23 C 1.49449 * 119.99879 * 173.47461 * 21 20 19 24 24 N 1.34780 * 119.99483 * 174.37127 * 23 21 20 25 25 O 1.21345 * 120.00461 * 354.37525 * 23 21 20 26 26 C 1.44589 * 122.70977 * 41.76422 * 20 19 18 27 27 C 1.47091 * 108.51389 * 59.99969 * 15 2 1 28 28 H 1.08997 * 109.46949 * 269.99360 * 1 2 3 29 29 H 1.08999 * 109.47340 * 29.99066 * 1 2 3 30 30 H 1.08998 * 109.47594 * 149.99626 * 1 2 3 31 31 H 1.08996 * 109.46758 * 299.99611 * 5 3 2 32 32 H 1.08999 * 109.47240 * 59.99932 * 5 3 2 33 33 H 0.96997 * 119.99922 * 179.97438 * 10 9 7 34 34 H 1.09008 * 109.48622 * 326.23407 * 17 15 2 35 35 H 1.08997 * 109.48926 * 86.30139 * 17 15 2 36 36 H 1.09004 * 109.36239 * 28.30261 * 18 17 15 37 37 H 1.09000 * 109.36697 * 148.04655 * 18 17 15 38 38 H 1.09002 * 108.93345 * 280.02251 * 19 18 17 39 39 H 1.08994 * 108.75561 * 161.51223 * 19 18 17 40 40 H 0.97001 * 120.00255 * 0.02562 * 24 23 21 41 41 H 0.96998 * 120.00125 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.44951 * 29.56748 * 26 20 19 43 43 H 1.08994 * 109.45407 * 149.48823 * 26 20 19 44 44 H 1.09000 * 109.33454 * 55.68062 * 27 15 2 45 45 H 1.09008 * 109.18584 * 296.11353 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8480 0.0012 7 6 1.4415 5.2082 0.0010 8 1 0.3762 5.0305 0.0011 9 6 1.9282 6.5080 0.0009 10 7 3.2266 6.7247 0.0003 11 14 0.7407 7.9500 0.0014 12 1 -0.6546 7.4421 0.0026 13 1 0.9670 8.7771 1.2139 14 1 0.9660 8.7772 -1.2111 15 6 2.1975 -1.2687 -0.0006 16 1 3.2641 -1.0485 -0.0435 17 6 1.9056 -1.9972 1.3078 18 6 3.0583 -2.9130 1.6383 19 6 2.7993 -4.3117 1.0591 20 7 2.2085 -4.2588 -0.2925 21 6 1.2086 -5.1104 -0.5945 22 8 0.8879 -5.9740 0.1954 23 6 0.4907 -4.9872 -1.8995 24 7 -0.4307 -5.9060 -2.2510 25 8 0.7372 -4.0601 -2.6426 26 6 2.6545 -3.3269 -1.3042 27 6 1.8270 -2.0214 -1.2088 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 0.7584 2.5302 -0.8892 32 1 0.7590 2.5299 0.8908 33 1 3.5667 7.6331 -0.0002 34 1 1.7784 -1.2689 2.1089 35 1 0.9936 -2.5844 1.2014 36 1 3.9760 -2.5069 1.2127 37 1 3.1632 -2.9857 2.7208 38 1 2.1200 -4.8486 1.7214 39 1 3.7448 -4.8518 1.0112 40 1 -0.6280 -6.6469 -1.6569 41 1 -0.8964 -5.8263 -3.0981 42 1 3.7093 -3.1002 -1.1490 43 1 2.5203 -3.7705 -2.2907 44 1 2.0186 -1.4078 -2.0891 45 1 0.7663 -2.2689 -1.1655 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078837130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:54 Heat of formation + Delta-G solvation = -86.063120 kcal Electronic energy + Delta-G solvation = -28478.950983 eV Core-core repulsion = 24430.606040 eV Total energy + Delta-G solvation = -4048.344943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49421 -39.93315 -38.82786 -37.80625 -35.61034 -34.21746 -33.32080 -32.42228 -32.40819 -29.07961 -27.60080 -26.82879 -25.59391 -25.19942 -24.91620 -21.90264 -20.68850 -19.96138 -19.13905 -18.35843 -17.77613 -17.56175 -16.97924 -16.64740 -16.23101 -15.79095 -15.66055 -15.50640 -14.99486 -14.79717 -14.63525 -14.27060 -14.03093 -13.83462 -13.40310 -13.24564 -13.05077 -12.82666 -12.70977 -12.48082 -12.31104 -12.08347 -11.81953 -11.73248 -11.52384 -11.18733 -11.06601 -11.00912 -10.89302 -10.76566 -10.67392 -10.25676 -9.79126 -9.77141 -9.33820 -9.12404 -9.06453 -8.46557 -8.20616 -6.48638 -6.20831 -3.91008 1.00807 2.04823 2.77513 2.95462 3.09179 3.22030 3.25444 3.27126 3.31826 3.62583 4.06241 4.21239 4.35482 4.59993 4.68904 4.77362 4.93684 4.95686 5.10013 5.14316 5.17804 5.22782 5.32522 5.41747 5.46780 5.51562 5.56634 5.61863 5.62736 5.75028 5.87952 5.91668 5.92607 6.00109 6.08347 6.16197 6.22702 6.24876 6.47961 6.72859 6.78903 7.32582 7.57900 7.60057 7.61225 8.36444 8.59787 9.24658 10.86667 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.002306 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.726408 B =12140.267184 C =12673.275557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.534 3.466 4 O -0.518 6.518 5 C -0.149 4.149 6 S -0.063 6.063 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.137 3.863 16 H 0.098 0.902 17 C -0.123 4.123 18 C -0.130 4.130 19 C 0.109 3.891 20 N -0.570 5.570 21 C 0.500 3.500 22 O -0.526 6.526 23 C 0.508 3.492 24 N -0.824 5.824 25 O -0.505 6.505 26 C 0.102 3.898 27 C -0.131 4.131 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.411 0.589 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.083 0.917 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -27.787 -1.457 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.358 5.358 3 C 0.322 3.678 4 O -0.393 6.393 5 C -0.300 4.300 6 S 0.164 5.836 7 C -0.681 4.681 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.034 3.966 16 H 0.116 0.884 17 C -0.162 4.162 18 C -0.169 4.169 19 C -0.012 4.012 20 N -0.303 5.303 21 C 0.282 3.718 22 O -0.403 6.403 23 C 0.288 3.712 24 N -0.390 5.390 25 O -0.380 6.380 26 C -0.021 4.021 27 C -0.170 4.170 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.243 0.757 41 H 0.243 0.757 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.710 -27.410 -1.374 27.846 hybrid contribution -2.651 0.719 -0.071 2.748 sum -7.361 -26.691 -1.445 27.725 Atomic orbital electron populations 1.21716 0.80130 1.03012 1.01552 1.48068 1.06667 1.05450 1.75589 1.20342 0.87941 0.84609 0.74934 1.90673 1.13729 1.86701 1.48159 1.23553 1.04507 0.97280 1.04657 1.85378 1.08153 0.93384 1.96688 1.22896 0.94327 0.92206 1.58716 0.90939 1.24994 0.95670 0.98385 0.94587 1.70030 1.11720 1.21526 1.47027 0.86119 0.80359 0.81141 0.77890 1.19633 1.20581 1.20567 1.20110 0.98997 0.83304 0.94172 0.88383 1.21440 0.98463 0.98547 0.97705 1.21678 0.99537 0.93952 1.01717 1.21976 0.99171 0.98162 0.81873 1.47690 1.33891 1.34606 1.14071 1.20170 0.81323 0.82669 0.87670 1.90753 1.65363 1.33679 1.50467 1.20145 0.81071 0.82843 0.87192 1.43565 1.41534 1.28983 1.24951 1.90818 1.62990 1.31361 1.52875 1.22070 0.98497 0.89338 0.92213 1.21459 1.01093 0.96053 0.98362 0.92952 0.90707 0.91510 0.89305 0.89369 0.92262 0.90805 0.91877 0.90593 0.89779 0.89005 0.91018 0.75715 0.75661 0.90229 0.87067 0.89836 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.68 59.85 0.58 1.48 16 2 N -0.62 -8.91 2.59 -177.49 -0.46 -9.37 16 3 C 0.53 10.22 7.69 -10.99 -0.08 10.13 16 4 O -0.52 -11.76 15.15 5.56 0.08 -11.67 16 5 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 6 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 7 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 10 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 11 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 C 0.14 1.67 1.97 -70.99 -0.14 1.53 16 16 H 0.10 1.40 6.03 -51.93 -0.31 1.09 16 17 C -0.12 -1.25 4.69 -28.02 -0.13 -1.38 16 18 C -0.13 -1.06 5.71 -27.48 -0.16 -1.22 16 19 C 0.11 0.84 6.03 -3.13 -0.02 0.82 16 20 N -0.57 -4.95 2.25 -173.26 -0.39 -5.34 16 21 C 0.50 4.66 7.67 -11.59 -0.09 4.57 16 22 O -0.53 -5.74 15.82 5.50 0.09 -5.65 16 23 C 0.51 4.21 7.89 -11.58 -0.09 4.12 16 24 N -0.82 -4.01 8.87 30.90 0.27 -3.73 16 25 O -0.51 -5.19 12.49 5.50 0.07 -5.12 16 26 C 0.10 0.92 4.96 -4.08 -0.02 0.89 16 27 C -0.13 -1.40 4.03 -28.58 -0.12 -1.52 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 30 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 31 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 32 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.07 0.84 8.05 -51.92 -0.42 0.42 16 35 H 0.06 0.63 7.48 -51.93 -0.39 0.24 16 36 H 0.08 0.66 7.32 -51.93 -0.38 0.28 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.76 7.03 -51.93 -0.37 0.39 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.41 1.50 8.32 -40.82 -0.34 1.16 16 41 H 0.41 1.25 8.93 -40.82 -0.36 0.89 16 42 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 43 H 0.11 1.03 5.48 -51.93 -0.28 0.74 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.77 5.64 -51.92 -0.29 0.47 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -36.17 371.18 -7.41 -43.59 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.27 Total: 1.16 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.10 Total: 3.53 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.16 Total: -43.98 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.24 Total: -22.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.17 -7.41 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078837130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.476 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds