Wall clock time and date at job start Wed Apr 1 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00080 * 2 1 4 4 H 1.08994 * 110.78256 * 26.75759 * 3 2 1 5 5 C 1.54321 * 110.72002 * 263.51647 * 3 2 1 6 6 N 1.47026 * 107.27473 * 219.44684 * 5 3 2 7 7 C 1.36931 * 125.64965 * 178.90072 * 6 5 3 8 8 H 1.08002 * 119.99651 * 174.88094 * 7 6 5 9 9 C 1.38810 * 120.00382 * 354.88141 * 7 6 5 10 10 N 1.31626 * 119.99711 * 7.06137 * 9 7 6 11 11 Si 1.86793 * 120.00378 * 187.06180 * 9 7 6 12 12 H 1.48498 * 109.47207 * 94.98547 * 11 9 7 13 13 H 1.48496 * 109.47341 * 214.98680 * 11 9 7 14 14 H 1.48505 * 109.47173 * 334.98656 * 11 9 7 15 15 C 1.47470 * 108.71932 * 358.97550 * 6 5 3 16 16 C 1.54913 * 104.81388 * 24.06913 * 15 6 5 17 17 H 1.09004 * 110.99913 * 81.13402 * 16 15 6 18 18 N 1.46494 * 111.00529 * 204.95098 * 16 15 6 19 19 C 1.34778 * 119.99888 * 270.41696 * 18 16 15 20 20 O 1.21549 * 119.99954 * 0.02562 * 19 18 16 21 21 C 1.47844 * 119.99993 * 179.97438 * 19 18 16 22 22 C 1.40600 * 120.27949 * 0.02907 * 21 19 18 23 23 N 1.30824 * 121.52197 * 179.97438 * 22 21 19 24 24 C 1.33752 * 121.79271 * 359.97438 * 23 22 21 25 25 N 1.33893 * 120.61689 * 179.97438 * 24 23 22 26 26 C 1.31339 * 119.84688 * 180.02562 * 25 24 23 27 27 C 1.39753 * 120.77680 * 0.02562 * 26 25 24 28 28 N 1.31308 * 120.55388 * 359.94933 * 27 26 25 29 29 C 1.33672 * 119.70681 * 359.78304 * 28 27 26 30 30 C 1.38905 * 120.27857 * 180.02562 * 21 19 18 31 31 H 1.09006 * 109.46666 * 60.00229 * 1 2 3 32 32 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47344 * 300.00474 * 1 2 3 34 34 H 1.09005 * 109.88239 * 338.86205 * 5 3 2 35 35 H 1.09001 * 109.88082 * 100.02526 * 5 3 2 36 36 H 0.96996 * 119.99781 * 179.97438 * 10 9 7 37 37 H 1.09001 * 110.34551 * 265.25200 * 15 6 5 38 38 H 1.08999 * 110.40373 * 142.91718 * 15 6 5 39 39 H 0.96995 * 120.00333 * 90.42087 * 18 16 15 40 40 H 1.08001 * 119.24036 * 359.97438 * 22 21 19 41 41 H 1.08001 * 119.61001 * 179.97438 * 26 25 24 42 42 H 1.08002 * 119.72350 * 179.97438 * 27 26 25 43 43 H 1.08000 * 121.00097 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3363 2.0288 0.4588 5 6 2.3812 1.7379 -1.4342 6 7 3.6687 2.4437 -1.3581 7 6 4.3550 2.9688 -2.4203 8 1 5.2544 3.5424 -2.2517 9 6 3.8948 2.7639 -3.7137 10 7 2.7289 2.1865 -3.9137 11 14 4.9298 3.3073 -5.1706 12 1 5.7408 2.1621 -5.6564 13 1 4.0399 3.7815 -6.2607 14 1 5.8319 4.4106 -4.7528 15 6 4.0999 2.4912 0.0514 16 6 3.3816 1.2957 0.7258 17 1 3.9155 0.3638 0.5396 18 7 3.2167 1.5252 2.1632 19 6 4.1766 1.1307 3.0231 20 8 5.1794 0.5851 2.6058 21 6 4.0105 1.3628 4.4737 22 6 2.8531 1.9939 4.9627 23 7 2.6807 2.2109 6.2412 24 6 3.5935 1.8444 7.1475 25 7 3.3930 2.0787 8.4505 26 6 4.2996 1.7128 9.3275 27 6 5.4765 1.0800 8.9178 28 7 5.6966 0.8386 7.6460 29 6 4.7853 1.1973 6.7362 30 6 4.9964 0.9592 5.3650 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.4770 0.8599 -2.0731 35 1 1.6155 2.4051 -1.8299 36 1 2.4071 2.0436 -4.8175 37 1 3.7889 3.4291 0.5115 38 1 5.1811 2.3731 0.1222 39 1 2.4166 1.9609 2.4961 40 1 2.0888 2.3067 4.2667 41 1 4.1342 1.9040 10.3775 42 1 6.2108 0.7868 9.6535 43 1 5.8955 0.4726 5.0169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081805576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:49 Heat of formation + Delta-G solvation = 50.662261 kcal Electronic energy + Delta-G solvation = -28970.977724 eV Core-core repulsion = 24825.410439 eV Total energy + Delta-G solvation = -4145.567286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.13847 -40.15694 -38.68437 -37.95580 -35.98766 -35.46221 -34.30833 -32.44154 -32.07571 -31.35700 -28.88963 -27.51967 -26.28230 -26.13672 -25.56053 -24.23866 -23.23529 -21.99984 -20.66323 -20.32113 -19.57907 -18.84865 -18.21533 -17.29541 -16.63630 -16.54637 -16.04029 -15.70328 -15.52156 -15.21192 -14.95598 -14.85467 -14.55625 -14.27785 -14.09011 -13.68033 -13.34498 -13.30143 -13.18512 -12.82444 -12.41757 -12.24240 -12.21040 -11.94795 -11.66360 -11.29310 -11.20364 -11.06061 -10.84630 -10.80119 -10.25147 -10.09974 -10.04636 -9.83389 -9.79392 -9.66336 -9.26616 -9.21197 -8.87334 -8.61960 -6.92872 -5.78145 -3.11940 -0.55626 -0.25977 1.27265 1.93548 2.85262 2.95060 3.00313 3.39422 3.44975 3.46333 3.49201 3.55780 3.56780 4.05259 4.08955 4.14520 4.29472 4.42496 4.49096 4.51269 4.75362 4.98344 5.10569 5.29175 5.33816 5.43364 5.46196 5.52980 5.58147 5.65238 5.77846 5.81605 5.87986 5.97623 6.06688 6.36941 6.42466 6.55967 6.72986 6.93526 7.19087 7.38601 7.41036 7.44784 7.68330 7.81452 8.07675 8.17227 9.13588 9.73869 10.36620 11.33711 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.002342 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.767465 B =11952.968809 C =12821.876435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.055 3.945 4 H 0.065 0.935 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.005 4.005 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.132 3.868 17 H 0.110 0.890 18 N -0.706 5.706 19 C 0.563 3.437 20 O -0.521 6.521 21 C -0.172 4.172 22 C 0.194 3.806 23 N -0.456 5.456 24 C 0.271 3.729 25 N -0.418 5.418 26 C 0.113 3.887 27 C 0.073 3.927 28 N -0.404 5.404 29 C 0.019 3.981 30 C 0.040 3.960 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.254 0.746 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.396 0.604 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -2.251 24.995 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.004 4.004 4 H 0.083 0.917 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.128 0.872 18 N -0.356 5.356 19 C 0.348 3.652 20 O -0.397 6.397 21 C -0.179 4.179 22 C 0.016 3.984 23 N -0.164 5.164 24 C 0.032 3.968 25 N -0.133 5.133 26 C -0.067 4.067 27 C -0.104 4.104 28 N -0.118 5.118 29 C -0.107 4.107 30 C 0.012 3.988 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.231 0.769 40 H 0.193 0.807 41 H 0.202 0.798 42 H 0.201 0.799 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.528 -2.374 24.585 24.746 hybrid contribution 0.523 0.328 -0.806 1.015 sum -1.006 -2.046 23.778 23.887 Atomic orbital electron populations 1.22724 0.81625 1.02153 0.99814 1.87917 1.19162 1.27420 1.95038 1.23848 0.92763 0.84225 0.99541 0.91722 1.21585 0.88183 0.97418 0.88948 1.44260 1.21101 1.66670 1.00731 1.19063 1.05759 1.27042 0.83975 0.90093 1.24843 0.97290 1.00658 0.97382 1.69945 1.18294 1.48261 1.20163 0.86083 0.79294 0.78019 0.82274 1.21470 1.21757 1.20562 1.21847 0.97917 0.93662 0.86303 1.22522 0.96834 1.01422 0.76535 0.87226 1.45861 1.21479 1.60653 1.07627 1.17746 0.83741 0.79190 0.84531 1.90839 1.28461 1.41967 1.78439 1.21242 0.97085 1.03963 0.95645 1.23330 0.94405 0.89398 0.91289 1.67481 1.29048 1.18350 1.01552 1.20094 0.90051 0.94737 0.91965 1.68349 1.29613 1.15169 1.00173 1.24356 0.89567 0.91857 1.00918 1.24257 0.97596 0.95189 0.93397 1.68624 1.27982 1.13222 1.01993 1.20217 0.93864 1.01380 0.95254 1.21834 0.98165 0.90020 0.88797 0.93570 0.90194 0.94762 0.91715 0.93403 0.93600 0.95824 0.92923 0.76901 0.80702 0.79786 0.79896 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 101.05 1.10 1.54 16 2 O -0.38 -6.57 10.43 -35.23 -0.37 -6.94 16 3 C 0.06 0.98 3.08 -24.90 -0.08 0.91 16 4 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 5 C 0.16 3.84 5.16 -3.06 -0.02 3.83 16 6 N -0.60 -14.99 3.40 -170.03 -0.58 -15.57 16 7 C -0.23 -6.34 10.26 -15.06 -0.15 -6.49 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 10 N -0.92 -26.50 10.36 55.49 0.57 -25.92 16 11 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.13 2.65 6.93 -2.50 -0.02 2.64 16 16 C 0.13 2.31 3.09 -65.78 -0.20 2.11 16 17 H 0.11 2.21 7.63 -51.93 -0.40 1.81 16 18 N -0.71 -9.35 5.17 -52.67 -0.27 -9.62 16 19 C 0.56 7.88 7.78 -12.33 -0.10 7.78 16 20 O -0.52 -9.28 16.07 5.32 0.09 -9.19 16 21 C -0.17 -1.95 5.88 -104.83 -0.62 -2.57 16 22 C 0.19 1.92 10.69 -17.09 -0.18 1.74 16 23 N -0.46 -5.48 10.39 -12.28 -0.13 -5.60 16 24 C 0.27 3.26 7.60 -157.60 -1.20 2.06 16 25 N -0.42 -4.45 10.55 -12.39 -0.13 -4.58 16 26 C 0.11 0.68 11.21 -17.20 -0.19 0.49 16 27 C 0.07 0.43 11.22 -17.21 -0.19 0.24 16 28 N -0.40 -3.97 10.46 -10.77 -0.11 -4.08 16 29 C 0.02 0.22 6.59 -84.78 -0.56 -0.34 16 30 C 0.04 0.45 9.68 -38.38 -0.37 0.08 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.06 1.74 7.21 -51.93 -0.37 1.37 16 35 H 0.05 1.21 7.61 -51.93 -0.40 0.82 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.40 3.87 6.57 -40.82 -0.27 3.60 16 40 H 0.18 1.16 6.38 -52.49 -0.33 0.82 16 41 H 0.19 0.27 8.06 -52.49 -0.42 -0.15 16 42 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 43 H 0.17 1.88 7.70 -52.49 -0.40 1.47 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -36.17 366.95 -8.38 -44.55 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.08 Total: 0.75 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: -2.88 Total: 13.77 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -0.65 Total: -65.38 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.28 Total: -16.13 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.17 -8.38 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081805576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.208 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds