Wall clock time and date at job start Wed Apr 1 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00080 * 2 1 4 4 H 1.08994 * 110.78256 * 26.75759 * 3 2 1 5 5 C 1.54321 * 110.72002 * 263.51647 * 3 2 1 6 6 N 1.47026 * 107.27473 * 219.44684 * 5 3 2 7 7 C 1.36931 * 125.64965 * 178.90072 * 6 5 3 8 8 H 1.08002 * 119.99651 * 174.88094 * 7 6 5 9 9 C 1.38810 * 120.00382 * 354.88141 * 7 6 5 10 10 N 1.31626 * 119.99711 * 7.06137 * 9 7 6 11 11 Si 1.86793 * 120.00378 * 187.06180 * 9 7 6 12 12 H 1.48498 * 109.47207 * 94.98547 * 11 9 7 13 13 H 1.48496 * 109.47341 * 214.98680 * 11 9 7 14 14 H 1.48505 * 109.47173 * 334.98656 * 11 9 7 15 15 C 1.47470 * 108.71932 * 358.97550 * 6 5 3 16 16 C 1.54913 * 104.81388 * 24.06913 * 15 6 5 17 17 H 1.09004 * 110.99913 * 81.13402 * 16 15 6 18 18 N 1.46494 * 111.00529 * 204.95098 * 16 15 6 19 19 C 1.34778 * 119.99888 * 270.41696 * 18 16 15 20 20 O 1.21549 * 119.99954 * 0.02562 * 19 18 16 21 21 C 1.47844 * 119.99993 * 179.97438 * 19 18 16 22 22 C 1.40600 * 120.27949 * 0.02907 * 21 19 18 23 23 N 1.30824 * 121.52197 * 179.97438 * 22 21 19 24 24 C 1.33752 * 121.79271 * 359.97438 * 23 22 21 25 25 N 1.33893 * 120.61689 * 179.97438 * 24 23 22 26 26 C 1.31339 * 119.84688 * 180.02562 * 25 24 23 27 27 C 1.39753 * 120.77680 * 0.02562 * 26 25 24 28 28 N 1.31308 * 120.55388 * 359.94933 * 27 26 25 29 29 C 1.33672 * 119.70681 * 359.78304 * 28 27 26 30 30 C 1.38905 * 120.27857 * 180.02562 * 21 19 18 31 31 H 1.09006 * 109.46666 * 60.00229 * 1 2 3 32 32 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47344 * 300.00474 * 1 2 3 34 34 H 1.09005 * 109.88239 * 338.86205 * 5 3 2 35 35 H 1.09001 * 109.88082 * 100.02526 * 5 3 2 36 36 H 0.96996 * 119.99781 * 179.97438 * 10 9 7 37 37 H 1.09001 * 110.34551 * 265.25200 * 15 6 5 38 38 H 1.08999 * 110.40373 * 142.91718 * 15 6 5 39 39 H 0.96995 * 120.00333 * 90.42087 * 18 16 15 40 40 H 1.08001 * 119.24036 * 359.97438 * 22 21 19 41 41 H 1.08001 * 119.61001 * 179.97438 * 26 25 24 42 42 H 1.08002 * 119.72350 * 179.97438 * 27 26 25 43 43 H 1.08000 * 121.00097 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3363 2.0288 0.4588 5 6 2.3812 1.7379 -1.4342 6 7 3.6687 2.4437 -1.3581 7 6 4.3550 2.9688 -2.4203 8 1 5.2544 3.5424 -2.2517 9 6 3.8948 2.7639 -3.7137 10 7 2.7289 2.1865 -3.9137 11 14 4.9298 3.3073 -5.1706 12 1 5.7408 2.1621 -5.6564 13 1 4.0399 3.7815 -6.2607 14 1 5.8319 4.4106 -4.7528 15 6 4.0999 2.4912 0.0514 16 6 3.3816 1.2957 0.7258 17 1 3.9155 0.3638 0.5396 18 7 3.2167 1.5252 2.1632 19 6 4.1766 1.1307 3.0231 20 8 5.1794 0.5851 2.6058 21 6 4.0105 1.3628 4.4737 22 6 2.8531 1.9939 4.9627 23 7 2.6807 2.2109 6.2412 24 6 3.5935 1.8444 7.1475 25 7 3.3930 2.0787 8.4505 26 6 4.2996 1.7128 9.3275 27 6 5.4765 1.0800 8.9178 28 7 5.6966 0.8386 7.6460 29 6 4.7853 1.1973 6.7362 30 6 4.9964 0.9592 5.3650 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.4770 0.8599 -2.0731 35 1 1.6155 2.4051 -1.8299 36 1 2.4071 2.0436 -4.8175 37 1 3.7889 3.4291 0.5115 38 1 5.1811 2.3731 0.1222 39 1 2.4166 1.9609 2.4961 40 1 2.0888 2.3067 4.2667 41 1 4.1342 1.9040 10.3775 42 1 6.2108 0.7868 9.6535 43 1 5.8955 0.4726 5.0169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081805576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:48 Heat of formation + Delta-G solvation = 21.716921 kcal Electronic energy + Delta-G solvation = -28972.232889 eV Core-core repulsion = 24825.410439 eV Total energy + Delta-G solvation = -4146.822450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.84783 -41.30535 -39.89448 -39.00538 -37.49983 -36.17193 -35.77219 -33.85933 -33.14761 -32.32457 -30.54397 -29.01019 -27.53773 -27.17016 -26.37383 -25.82942 -24.02944 -23.12808 -22.19102 -21.90663 -20.50909 -19.71212 -19.06458 -18.95211 -17.88261 -17.67421 -17.15640 -16.81383 -16.57479 -16.23119 -16.02495 -15.91130 -15.82234 -15.70218 -15.36263 -15.03460 -14.60173 -14.49230 -14.06983 -13.97840 -13.90120 -13.60754 -13.25771 -13.03216 -12.96210 -12.86548 -12.78158 -12.58496 -12.30448 -12.06906 -12.02170 -11.87395 -11.62649 -11.28235 -10.75542 -10.66894 -10.57660 -10.37524 -10.15759 -9.93644 -8.95661 -7.88766 -5.24852 -1.27828 -0.93581 0.52255 1.19570 1.45621 1.48583 1.56554 1.73478 1.99696 2.35891 2.46386 2.76807 2.80044 2.82521 2.89960 3.29144 3.32534 3.43279 3.50643 3.56751 3.74757 3.84042 3.91517 3.92580 4.08844 4.29477 4.32539 4.39735 4.45177 4.60828 4.61970 4.67631 4.77504 4.84940 4.90955 4.94000 5.22252 5.28731 5.35358 5.45548 5.67366 5.79250 6.14268 6.29970 6.32047 6.34132 6.70877 6.99318 7.05516 7.70386 8.32671 9.21232 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.002342 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.767465 B =11952.968809 C =12821.876435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.076 3.924 4 H 0.103 0.897 5 C 0.173 3.827 6 N -0.622 5.622 7 C -0.245 4.245 8 H 0.083 0.917 9 C -0.061 4.061 10 N -0.946 5.946 11 Si 0.977 3.023 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.267 1.267 15 C 0.130 3.870 16 C 0.151 3.849 17 H 0.081 0.919 18 N -0.689 5.689 19 C 0.570 3.430 20 O -0.565 6.565 21 C -0.176 4.176 22 C 0.199 3.801 23 N -0.476 5.476 24 C 0.254 3.746 25 N -0.456 5.456 26 C 0.134 3.866 27 C 0.091 3.909 28 N -0.435 5.435 29 C 0.003 3.997 30 C 0.035 3.965 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.249 0.751 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.417 0.583 40 H 0.207 0.793 41 H 0.236 0.764 42 H 0.233 0.767 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -1.635 28.596 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.017 3.983 4 H 0.121 0.879 5 C 0.047 3.953 6 N -0.350 5.350 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.254 4.254 10 N -0.594 5.594 11 Si 0.805 3.195 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.191 1.191 15 C 0.003 3.997 16 C 0.045 3.955 17 H 0.099 0.901 18 N -0.341 5.341 19 C 0.357 3.643 20 O -0.444 6.444 21 C -0.183 4.183 22 C 0.023 3.977 23 N -0.185 5.185 24 C 0.015 3.985 25 N -0.171 5.171 26 C -0.046 4.046 27 C -0.086 4.086 28 N -0.149 5.149 29 C -0.121 4.121 30 C 0.008 3.992 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.256 0.744 40 H 0.224 0.776 41 H 0.252 0.748 42 H 0.250 0.750 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.873 -1.738 28.203 28.319 hybrid contribution 0.689 0.098 -1.631 1.774 sum -1.184 -1.641 26.572 26.649 Atomic orbital electron populations 1.23006 0.79275 1.03874 1.00926 1.87902 1.21777 1.26928 1.94918 1.23509 0.93540 0.85476 0.95806 0.87926 1.21316 0.87073 0.94837 0.92066 1.44519 1.21804 1.66515 1.02118 1.19421 1.05928 1.26888 0.85155 0.89896 1.25662 0.98452 1.01410 0.99922 1.70155 1.19635 1.49538 1.20121 0.85078 0.77775 0.77724 0.78873 1.21703 1.21812 1.19146 1.21967 0.97451 0.95730 0.84555 1.21919 0.96041 0.98800 0.78786 0.90112 1.45519 1.22364 1.60670 1.05576 1.18054 0.82821 0.77928 0.85529 1.90822 1.30266 1.43922 1.79351 1.20909 0.98231 1.05652 0.93516 1.23688 0.94260 0.88485 0.91294 1.67527 1.29603 1.19218 1.02160 1.20332 0.90259 0.95089 0.92794 1.68436 1.31563 1.17096 1.00008 1.25317 0.88154 0.88701 1.02403 1.25186 0.98174 0.92494 0.92791 1.68678 1.28137 1.14663 1.03466 1.20174 0.94381 1.02261 0.95333 1.21870 0.97979 0.89896 0.89499 0.94596 0.88338 0.91391 0.96281 0.95991 0.94199 0.93616 0.94367 0.74384 0.77612 0.74767 0.75031 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.85 113.37 1.23 1.85 16 2 O -0.40 -13.59 10.43 -148.98 -1.55 -15.15 16 3 C 0.08 2.66 3.08 31.78 0.10 2.76 16 4 H 0.10 2.83 7.68 -2.39 -0.02 2.82 16 5 C 0.17 8.40 5.16 86.73 0.45 8.84 16 6 N -0.62 -32.00 3.40 -691.86 -2.35 -34.35 16 7 C -0.25 -13.85 10.26 84.03 0.86 -12.99 16 8 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 9 C -0.06 -3.48 5.48 84.86 0.46 -3.02 16 10 N -0.95 -56.66 10.36 21.65 0.22 -56.44 16 11 Si 0.98 46.09 29.56 68.60 2.03 48.11 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.13 5.34 6.93 86.85 0.60 5.94 16 16 C 0.15 5.31 3.09 46.39 0.14 5.45 16 17 H 0.08 3.37 7.63 -2.38 -0.02 3.35 16 18 N -0.69 -17.44 5.17 -438.82 -2.27 -19.71 16 19 C 0.57 15.88 7.78 86.79 0.67 16.56 16 20 O -0.56 -20.77 16.07 -3.87 -0.06 -20.83 16 21 C -0.18 -3.93 5.88 -20.00 -0.12 -4.04 16 22 C 0.20 3.69 10.69 85.42 0.91 4.60 16 23 N -0.48 -10.90 10.39 -192.75 -2.00 -12.90 16 24 C 0.25 5.81 7.60 134.96 1.03 6.83 16 25 N -0.46 -8.67 10.55 -193.11 -2.04 -10.70 16 26 C 0.13 1.10 11.21 85.13 0.95 2.05 16 27 C 0.09 0.74 11.22 85.14 0.96 1.69 16 28 N -0.43 -7.79 10.46 -187.99 -1.97 -9.76 16 29 C 0.00 0.06 6.59 40.34 0.27 0.33 16 30 C 0.04 0.82 9.68 23.05 0.22 1.05 16 31 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 34 H 0.02 1.08 7.21 -2.38 -0.02 1.07 16 35 H 0.02 1.16 7.61 -2.39 -0.02 1.14 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.42 6.99 6.57 -92.71 -0.61 6.39 16 40 H 0.21 2.15 6.38 -2.91 -0.02 2.13 16 41 H 0.24 -0.69 8.06 -2.91 -0.02 -0.71 16 42 H 0.23 -0.60 8.06 -2.91 -0.02 -0.63 16 43 H 0.16 3.81 7.70 -2.91 -0.02 3.79 16 Total: -1.00 -85.07 366.95 -0.78 -85.85 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.46 Total: 7.97 kcal Atomic # 6 Polarization: 29.16 SS G_CDS: 8.74 Total: 37.90 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -10.40 Total: -143.87 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.62 Total: -35.97 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -85.07 -0.78 -85.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081805576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.571 kcal (2) G-P(sol) polarization free energy of solvation -85.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds