Wall clock time and date at job start Wed Apr 1 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.09001 * 111.00700 * 81.10125 * 16 15 6 18 18 N 1.46497 * 111.00379 * 204.91948 * 16 15 6 19 19 C 1.34785 * 119.99606 * 273.54230 * 18 16 15 20 20 O 1.21479 * 120.00033 * 0.02562 * 19 18 16 21 21 C 1.48434 * 119.99889 * 180.02562 * 19 18 16 22 22 N 1.33491 * 119.21886 * 0.02562 * 21 19 18 23 23 N 1.28927 * 122.02223 * 179.97438 * 22 21 19 24 24 C 1.33809 * 119.74496 * 0.02562 * 23 22 21 25 25 C 1.40336 * 121.78003 * 179.97438 * 24 23 22 26 26 C 1.36190 * 119.62254 * 179.97438 * 25 24 23 27 27 C 1.39445 * 121.07376 * 0.04054 * 26 25 24 28 28 C 1.36131 * 121.00956 * 359.97438 * 27 26 25 29 29 C 1.40504 * 119.56741 * 0.02562 * 28 27 26 30 30 N 1.32056 * 119.22043 * 179.72805 * 21 19 18 31 31 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 32 32 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 34 34 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 35 35 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 36 36 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 37 37 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 38 38 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 39 39 H 0.97002 * 120.00823 * 93.54760 * 18 16 15 40 40 H 1.08004 * 120.18915 * 0.02562 * 25 24 23 41 41 H 1.07999 * 119.46099 * 180.02562 * 26 25 24 42 42 H 1.08001 * 119.49406 * 180.02562 * 27 26 25 43 43 H 1.08005 * 120.21492 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9176 0.3655 0.5371 18 7 3.2164 1.5211 2.1637 19 6 4.2042 1.1840 3.0165 20 8 5.2317 0.6938 2.5926 21 6 4.0365 1.4117 4.4737 22 7 2.9008 1.9508 4.9225 23 7 2.6977 2.1717 6.1764 24 6 3.6446 1.8570 7.0679 25 6 3.4689 2.0793 8.4423 26 6 4.4619 1.7417 9.3112 27 6 5.6540 1.1780 8.8579 28 6 5.8613 0.9474 7.5324 29 6 4.8600 1.2826 6.6055 30 7 5.0120 1.0707 5.2959 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6128 2.4181 -1.8233 35 1 2.4707 0.8724 -2.0758 36 1 5.4424 3.3480 -4.6595 37 1 5.1786 2.3788 0.1248 38 1 3.7841 3.4306 0.5171 39 1 2.3961 1.9128 2.5023 40 1 2.5512 2.5150 8.8091 41 1 4.3237 1.9136 10.3684 42 1 6.4243 0.9195 9.5694 43 1 6.7895 0.5098 7.1955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081950832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:55 Heat of formation + Delta-G solvation = 74.908636 kcal Electronic energy + Delta-G solvation = -29137.013976 eV Core-core repulsion = 24992.498092 eV Total energy + Delta-G solvation = -4144.515884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.48356 -40.00665 -38.76475 -38.23800 -36.26983 -35.71658 -34.38980 -32.67810 -31.96879 -31.48382 -29.20936 -28.19051 -26.79068 -26.33334 -25.99191 -23.82035 -23.13837 -21.89670 -21.16915 -20.31758 -19.77167 -19.50251 -18.06919 -17.39694 -16.85729 -16.63956 -16.49982 -16.22067 -15.53687 -15.22392 -14.91579 -14.84625 -14.75068 -14.25435 -14.12335 -13.52736 -13.50271 -13.24002 -13.06534 -12.89448 -12.74314 -12.58951 -12.44186 -12.17247 -11.98787 -11.92715 -11.82604 -11.26808 -11.14578 -10.68738 -10.45557 -10.17472 -10.07922 -9.84696 -9.77440 -9.34626 -9.26927 -9.12660 -8.94679 -8.63539 -7.08246 -6.31415 -3.23018 -0.80403 -0.39712 1.08243 1.80302 2.38806 2.72322 2.98417 3.33591 3.38923 3.40346 3.46150 3.61688 3.70427 3.82322 3.91243 4.09052 4.34944 4.52523 4.56942 4.61323 4.74358 4.89167 5.05877 5.12916 5.17945 5.25827 5.28180 5.33605 5.40218 5.45172 5.52536 5.57178 5.67486 5.75759 5.81799 5.86773 6.15586 6.23986 6.34408 6.48882 6.51463 6.66934 7.30179 7.35189 7.60987 7.74113 7.99888 8.32800 9.03311 9.52985 10.17952 11.19748 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.002484 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.197833 B =11270.781498 C =11970.537251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.073 3.927 4 H 0.077 0.923 5 C 0.095 3.905 6 N -0.606 5.606 7 C -0.322 4.322 8 H 0.082 0.918 9 C -0.021 4.021 10 N -0.926 5.926 11 Si 1.068 2.932 12 H -0.300 1.300 13 H -0.298 1.298 14 H -0.284 1.284 15 C 0.130 3.870 16 C 0.134 3.866 17 H 0.113 0.887 18 N -0.691 5.691 19 C 0.588 3.412 20 O -0.491 6.491 21 C 0.224 3.776 22 N -0.235 5.235 23 N -0.139 5.139 24 C 0.018 3.982 25 C -0.067 4.067 26 C -0.090 4.090 27 C -0.072 4.072 28 C -0.085 4.085 29 C 0.133 3.867 30 N -0.393 5.393 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.409 0.591 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 -4.598 31.478 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.014 3.986 4 H 0.095 0.905 5 C -0.030 4.030 6 N -0.335 5.335 7 C -0.449 4.449 8 H 0.100 0.900 9 C -0.221 4.221 10 N -0.567 5.567 11 Si 0.902 3.098 12 H -0.228 1.228 13 H -0.227 1.227 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.029 3.971 17 H 0.131 0.869 18 N -0.343 5.343 19 C 0.367 3.633 20 O -0.361 6.361 21 C -0.048 4.048 22 N -0.096 5.096 23 N -0.002 5.002 24 C -0.114 4.114 25 C -0.089 4.089 26 C -0.111 4.111 27 C -0.095 4.095 28 C -0.105 4.105 29 C -0.006 4.006 30 N -0.115 5.115 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.245 0.755 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.927 -4.915 29.191 30.190 hybrid contribution 1.198 0.327 1.960 2.320 sum -4.729 -4.588 31.151 31.840 Atomic orbital electron populations 1.22816 0.81207 1.02660 1.00093 1.87943 1.19562 1.26825 1.94900 1.23402 0.93642 0.84876 0.96726 0.90526 1.22429 0.89558 0.96640 0.94375 1.44602 1.20796 1.65909 1.02157 1.20180 0.97720 1.39563 0.87402 0.90045 1.25831 1.06624 0.98945 0.90688 1.70898 1.07086 1.50514 1.28205 0.83886 0.75910 0.76214 0.73832 1.22762 1.22675 1.21093 1.21872 0.98543 0.93743 0.85585 1.22508 0.96199 1.01692 0.76662 0.86868 1.45668 1.18972 1.62751 1.06942 1.16921 0.84448 0.79866 0.82081 1.90865 1.27154 1.41796 1.76333 1.24457 0.87951 0.94772 0.97623 1.73955 1.18712 1.08993 1.07931 1.74487 1.22902 1.07101 0.95757 1.21015 0.93596 0.99497 0.97321 1.20826 1.00658 0.98345 0.89057 1.21263 0.92664 0.96128 1.01016 1.21284 0.97521 0.95141 0.95505 1.20969 0.98594 0.99196 0.91715 1.19773 0.94195 0.95417 0.91201 1.69117 1.28517 1.11881 1.02023 0.93734 0.89671 0.94075 0.94747 0.91813 0.92742 0.92177 0.95155 0.75451 0.83056 0.83635 0.83559 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.45 16 2 O -0.37 -6.23 10.45 -35.23 -0.37 -6.60 16 3 C 0.07 1.27 3.05 -24.89 -0.08 1.19 16 4 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 5 C 0.10 2.12 4.40 -3.06 -0.01 2.10 16 6 N -0.61 -15.19 3.33 -170.07 -0.57 -15.75 16 7 C -0.32 -9.39 10.56 -15.06 -0.16 -9.55 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 9 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 10 N -0.93 -29.48 13.71 55.49 0.76 -28.72 16 11 Si 1.07 26.89 24.52 -169.99 -4.17 22.72 16 12 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 13 H -0.30 -7.13 6.82 56.52 0.39 -6.75 16 14 H -0.28 -6.56 5.41 56.52 0.31 -6.25 16 15 C 0.13 2.74 6.93 -2.53 -0.02 2.73 16 16 C 0.13 2.42 3.04 -65.78 -0.20 2.22 16 17 H 0.11 2.24 7.73 -51.93 -0.40 1.84 16 18 N -0.69 -10.54 5.22 -52.48 -0.27 -10.82 16 19 C 0.59 9.75 7.85 -12.06 -0.09 9.65 16 20 O -0.49 -9.75 16.61 5.38 0.09 -9.66 16 21 C 0.22 3.31 7.65 -156.57 -1.20 2.12 16 22 N -0.23 -3.14 10.72 32.10 0.34 -2.80 16 23 N -0.14 -1.66 11.68 32.28 0.38 -1.28 16 24 C 0.02 0.18 6.68 -84.71 -0.57 -0.38 16 25 C -0.07 -0.39 10.00 -39.53 -0.40 -0.78 16 26 C -0.09 -0.30 9.95 -39.87 -0.40 -0.70 16 27 C -0.07 -0.27 9.95 -39.89 -0.40 -0.67 16 28 C -0.09 -0.60 10.01 -39.49 -0.40 -0.99 16 29 C 0.13 1.45 6.61 -84.77 -0.56 0.89 16 30 N -0.39 -5.60 10.22 -8.99 -0.09 -5.69 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.43 8.11 -51.93 -0.42 0.01 16 34 H 0.04 0.79 3.89 -51.92 -0.20 0.59 16 35 H 0.06 1.52 6.62 -51.93 -0.34 1.18 16 36 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.41 5.27 7.82 -40.82 -0.32 4.95 16 40 H 0.15 0.56 8.06 -52.48 -0.42 0.13 16 41 H 0.15 0.01 8.06 -52.49 -0.42 -0.41 16 42 H 0.15 0.08 8.06 -52.49 -0.42 -0.34 16 43 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -36.94 362.24 -7.06 -44.00 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.16 Total: 0.58 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -3.47 Total: 8.55 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.55 Total: -65.06 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.28 Total: -16.26 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -4.17 Total: 22.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.94 -7.06 -44.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081950832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.913 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds