Wall clock time and date at job start Wed Apr 1 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.09001 * 111.00700 * 81.10125 * 16 15 6 18 18 N 1.46497 * 111.00379 * 204.91948 * 16 15 6 19 19 C 1.34785 * 119.99606 * 273.54230 * 18 16 15 20 20 O 1.21479 * 120.00033 * 0.02562 * 19 18 16 21 21 C 1.48434 * 119.99889 * 180.02562 * 19 18 16 22 22 N 1.33491 * 119.21886 * 0.02562 * 21 19 18 23 23 N 1.28927 * 122.02223 * 179.97438 * 22 21 19 24 24 C 1.33809 * 119.74496 * 0.02562 * 23 22 21 25 25 C 1.40336 * 121.78003 * 179.97438 * 24 23 22 26 26 C 1.36190 * 119.62254 * 179.97438 * 25 24 23 27 27 C 1.39445 * 121.07376 * 0.04054 * 26 25 24 28 28 C 1.36131 * 121.00956 * 359.97438 * 27 26 25 29 29 C 1.40504 * 119.56741 * 0.02562 * 28 27 26 30 30 N 1.32056 * 119.22043 * 179.72805 * 21 19 18 31 31 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 32 32 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 34 34 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 35 35 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 36 36 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 37 37 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 38 38 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 39 39 H 0.97002 * 120.00823 * 93.54760 * 18 16 15 40 40 H 1.08004 * 120.18915 * 0.02562 * 25 24 23 41 41 H 1.07999 * 119.46099 * 180.02562 * 26 25 24 42 42 H 1.08001 * 119.49406 * 180.02562 * 27 26 25 43 43 H 1.08005 * 120.21492 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9176 0.3655 0.5371 18 7 3.2164 1.5211 2.1637 19 6 4.2042 1.1840 3.0165 20 8 5.2317 0.6938 2.5926 21 6 4.0365 1.4117 4.4737 22 7 2.9008 1.9508 4.9225 23 7 2.6977 2.1717 6.1764 24 6 3.6446 1.8570 7.0679 25 6 3.4689 2.0793 8.4423 26 6 4.4619 1.7417 9.3112 27 6 5.6540 1.1780 8.8579 28 6 5.8613 0.9474 7.5324 29 6 4.8600 1.2826 6.6055 30 7 5.0120 1.0707 5.2959 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6128 2.4181 -1.8233 35 1 2.4707 0.8724 -2.0758 36 1 5.4424 3.3480 -4.6595 37 1 5.1786 2.3788 0.1248 38 1 3.7841 3.4306 0.5171 39 1 2.3961 1.9128 2.5023 40 1 2.5512 2.5150 8.8091 41 1 4.3237 1.9136 10.3684 42 1 6.4243 0.9195 9.5694 43 1 6.7895 0.5098 7.1955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081950832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:52 Heat of formation + Delta-G solvation = 69.801376 kcal Electronic energy + Delta-G solvation = -29137.235443 eV Core-core repulsion = 24992.498092 eV Total energy + Delta-G solvation = -4144.737352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -42.21778 -40.70206 -39.80692 -39.00722 -37.41904 -36.86900 -35.62776 -33.71525 -32.76345 -31.25781 -30.59717 -29.94463 -28.40792 -27.23182 -25.74182 -24.74349 -24.30265 -23.02056 -21.94538 -21.83670 -21.64027 -19.64466 -19.21820 -18.70441 -18.29142 -17.93388 -17.21136 -17.00040 -16.74513 -16.47519 -16.17188 -15.90661 -15.79986 -15.40456 -15.03767 -14.74991 -14.54466 -14.44642 -14.35312 -14.20576 -13.77542 -13.66321 -13.52545 -13.41544 -12.70928 -12.42076 -12.38992 -12.11612 -11.99410 -11.85546 -11.64291 -11.38843 -11.18089 -11.16609 -11.09775 -10.91690 -10.87881 -10.50342 -10.25135 -9.30439 -8.36778 -8.33509 -4.90929 -1.93481 0.16181 0.56751 0.67802 0.73006 1.32668 1.61736 1.67020 1.87683 1.95148 1.97310 2.32564 2.40910 2.72012 2.91521 3.09554 3.21334 3.35813 3.47521 3.65904 3.73071 3.86704 4.05624 4.08488 4.10794 4.28489 4.40700 4.42321 4.53389 4.58781 4.64673 4.71203 4.77831 4.91793 4.99766 5.16892 5.39998 5.41686 5.55308 5.92093 6.00530 6.04056 6.12352 6.43669 6.51294 6.69287 6.78399 6.96261 7.38321 7.54008 8.34900 9.50082 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.002484 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.197833 B =11270.781498 C =11970.537251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.384 6.384 3 C 0.071 3.929 4 H 0.122 0.878 5 C -0.005 4.005 6 N -0.413 5.413 7 C 0.349 3.651 8 H 0.258 0.742 9 C -0.091 4.091 10 N -0.488 5.488 11 Si 1.025 2.975 12 H -0.256 1.256 13 H -0.221 1.221 14 H -0.206 1.206 15 C 0.051 3.949 16 C 0.122 3.878 17 H 0.103 0.897 18 N -0.701 5.701 19 C 0.617 3.383 20 O -0.579 6.579 21 C 0.029 3.971 22 N -0.305 5.305 23 N -0.544 5.544 24 C 0.039 3.961 25 C -0.289 4.289 26 C -0.226 4.226 27 C -0.122 4.122 28 C -0.371 4.371 29 C 0.181 3.819 30 N -0.736 5.736 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.368 0.632 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.414 0.586 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.609 8.623 -58.266 59.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.302 6.302 3 C 0.011 3.989 4 H 0.140 0.860 5 C -0.125 4.125 6 N -0.081 5.081 7 C 0.167 3.833 8 H 0.274 0.726 9 C -0.327 4.327 10 N -0.111 5.111 11 Si 0.839 3.161 12 H -0.180 1.180 13 H -0.145 1.145 14 H -0.128 1.128 15 C -0.071 4.071 16 C 0.016 3.984 17 H 0.121 0.879 18 N -0.356 5.356 19 C 0.406 3.594 20 O -0.457 6.457 21 C -0.240 4.240 22 N -0.148 5.148 23 N -0.401 5.401 24 C -0.077 4.077 25 C -0.323 4.323 26 C -0.250 4.250 27 C -0.142 4.142 28 C -0.408 4.408 29 C 0.045 3.955 30 N -0.476 5.476 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.171 0.829 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.252 0.748 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.956 8.263 -60.335 61.706 hybrid contribution 1.722 -0.053 2.500 3.036 sum -8.233 8.210 -57.835 58.992 Atomic orbital electron populations 1.23222 0.78203 1.04670 1.02106 1.88049 1.22476 1.25203 1.94467 1.23459 0.94612 0.88215 0.92591 0.86036 1.25179 0.83965 1.01638 1.01693 1.49204 1.17870 1.31555 1.09447 1.27333 0.97398 0.73536 0.85047 0.72631 1.29413 1.14235 1.00752 0.88339 1.70878 1.16754 0.93049 1.30415 0.84463 0.65107 0.83730 0.82837 1.18045 1.14464 1.12836 1.24221 1.05116 1.02346 0.75452 1.22297 0.96964 0.99076 0.80060 0.87877 1.45285 1.19576 1.65777 1.04918 1.17180 0.82625 0.76036 0.83594 1.90488 1.30164 1.46605 1.78447 1.22825 0.93336 1.12129 0.95684 1.72184 1.19222 1.11817 1.11563 1.73744 1.27746 1.43869 0.94785 1.20851 0.93659 0.96323 0.96823 1.19049 1.00954 1.21451 0.90885 1.19603 0.96069 1.12610 0.96677 1.19854 0.96891 1.03557 0.93937 1.18958 1.00135 1.28371 0.93336 1.19750 0.92765 0.90443 0.92526 1.68648 1.33562 1.44446 1.00926 0.89514 0.88847 0.93811 0.82862 0.81056 0.81113 0.83945 0.83154 0.74846 0.91255 0.88414 0.88132 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.85 113.37 1.23 1.30 16 2 O -0.38 -3.90 10.45 -148.98 -1.56 -5.46 16 3 C 0.07 0.26 3.05 31.79 0.10 0.36 16 4 H 0.12 0.17 7.68 -2.39 -0.02 0.15 16 5 C -0.01 0.05 4.40 86.73 0.38 0.43 16 6 N -0.41 5.30 3.33 -691.97 -2.30 3.00 16 7 C 0.35 -7.45 10.56 84.03 0.89 -6.57 16 8 H 0.26 -7.73 8.06 -2.91 -0.02 -7.76 16 9 C -0.09 1.65 5.50 84.86 0.47 2.12 16 10 N -0.49 7.39 13.71 21.65 0.30 7.69 16 11 Si 1.02 -14.45 24.52 68.60 1.68 -12.76 16 12 H -0.26 1.96 7.11 99.48 0.71 2.66 16 13 H -0.22 3.23 6.82 99.48 0.68 3.90 16 14 H -0.21 3.34 5.41 99.48 0.54 3.88 16 15 C 0.05 -0.01 6.93 86.86 0.60 0.59 16 16 C 0.12 1.74 3.04 46.38 0.14 1.89 16 17 H 0.10 1.96 7.73 -2.39 -0.02 1.94 16 18 N -0.70 -23.42 5.22 -438.26 -2.29 -25.70 16 19 C 0.62 33.30 7.85 86.96 0.68 33.98 16 20 O -0.58 -32.46 16.61 -3.65 -0.06 -32.52 16 21 C 0.03 2.13 7.65 137.46 1.05 3.18 16 22 N -0.31 -22.42 10.72 -52.35 -0.56 -22.98 16 23 N -0.54 -44.60 11.68 -51.80 -0.61 -45.21 16 24 C 0.04 3.37 6.68 40.33 0.27 3.64 16 25 C -0.29 -23.03 10.00 22.30 0.22 -22.81 16 26 C -0.23 -16.56 9.95 22.08 0.22 -16.34 16 27 C -0.12 -8.93 9.95 22.07 0.22 -8.71 16 28 C -0.37 -30.06 10.01 22.33 0.22 -29.84 16 29 C 0.18 15.60 6.61 40.41 0.27 15.87 16 30 N -0.74 -61.30 10.22 -182.37 -1.86 -63.16 16 31 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.04 0.38 8.11 -2.39 -0.02 0.36 16 34 H 0.15 -2.41 3.89 -2.38 -0.01 -2.42 16 35 H 0.17 -2.33 6.62 -2.39 -0.02 -2.34 16 36 H 0.37 -7.32 8.73 -92.71 -0.81 -8.13 16 37 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.41 13.96 7.82 -92.71 -0.72 13.24 16 40 H 0.07 5.28 8.06 -2.91 -0.02 5.26 16 41 H 0.10 6.25 8.06 -2.91 -0.02 6.22 16 42 H 0.10 6.39 8.06 -2.91 -0.02 6.36 16 43 H 0.06 4.99 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -189.53 362.24 -0.18 -189.72 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.11 Total: 28.31 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 6.96 Total: -20.92 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -7.32 Total: -146.36 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.62 Total: -37.98 kcal Atomic # 14 Polarization: -14.45 SS G_CDS: 1.68 Total: -12.76 kcal Total: -189.53 -0.18 -189.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081950832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.517 kcal (2) G-P(sol) polarization free energy of solvation -189.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -189.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds