Wall clock time and date at job start Wed Apr 1 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99995 * 2 1 4 4 C 1.52997 * 109.46947 * 264.71628 * 3 2 1 5 5 H 1.09000 * 112.96705 * 294.16417 * 4 3 2 6 6 C 1.53942 * 113.77011 * 65.84787 * 4 3 2 7 7 C 1.53948 * 86.29334 * 137.90880 * 6 4 3 8 8 N 1.47583 * 113.76906 * 162.48902 * 4 3 2 9 9 C 1.36940 * 134.49054 * 41.06727 * 8 4 3 10 10 H 1.07996 * 120.00180 * 4.91615 * 9 8 4 11 11 C 1.38818 * 119.99810 * 184.91371 * 9 8 4 12 12 N 1.31619 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99864 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47493 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46852 * 120.00021 * 13 11 9 16 16 H 1.48493 * 109.47427 * 239.99985 * 13 11 9 17 17 C 1.34780 * 119.99894 * 179.97438 * 2 1 3 18 18 O 1.21549 * 119.99823 * 181.92902 * 17 2 1 19 19 C 1.47885 * 119.99822 * 1.93625 * 17 2 1 20 20 C 1.38805 * 119.32562 * 172.61314 * 19 17 2 21 21 C 1.39863 * 118.37837 * 180.02562 * 20 19 17 22 22 C 1.41390 * 122.95216 * 180.02562 * 21 20 19 23 23 O 1.35224 * 120.99300 * 0.02562 * 22 21 20 24 24 N 1.32496 * 118.01197 * 179.97438 * 22 21 20 25 25 C 1.32359 * 121.48212 * 0.02562 * 24 22 21 26 26 N 1.31307 * 123.09945 * 0.02562 * 25 24 22 27 27 C 1.33696 * 120.36781 * 359.97438 * 26 25 24 28 28 C 1.40611 * 122.62571 * 180.28585 * 27 26 25 29 29 N 1.30912 * 120.16049 * 180.23337 * 28 27 26 30 30 H 1.09001 * 109.47746 * 263.76966 * 1 2 3 31 31 H 1.09005 * 109.47378 * 23.76920 * 1 2 3 32 32 H 1.09000 * 109.47034 * 143.76489 * 1 2 3 33 33 H 1.09007 * 109.46915 * 24.71788 * 3 2 1 34 34 H 1.09001 * 109.47382 * 144.71645 * 3 2 1 35 35 H 1.09000 * 113.74595 * 252.25047 * 6 4 3 36 36 H 1.09005 * 113.74623 * 23.45365 * 6 4 3 37 37 H 1.08991 * 113.76942 * 90.69149 * 7 6 4 38 38 H 1.09002 * 113.76663 * 221.98142 * 7 6 4 39 39 H 0.96999 * 119.99913 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.81239 * 0.04159 * 20 19 17 41 41 H 0.96700 * 113.99609 * 269.97190 * 23 22 21 42 42 H 1.07997 * 118.45080 * 179.97438 * 25 24 22 43 43 H 1.08012 * 119.91664 * 359.97273 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5675 1.6439 -1.4364 5 1 3.2772 0.9506 -1.8877 6 6 1.3526 1.9566 -2.3286 7 6 2.1833 3.1313 -2.8763 8 7 2.9339 3.0636 -1.6047 9 6 3.6717 3.9573 -0.8752 10 1 4.1975 3.6289 0.0091 11 6 3.7437 5.2855 -1.2725 12 7 3.1025 5.6858 -2.3499 13 14 4.7495 6.5048 -0.2770 14 1 5.3679 5.8087 0.8798 15 1 5.8158 7.0830 -1.1338 16 1 3.8651 7.5919 0.2139 17 6 2.1389 -1.1672 0.0005 18 8 3.3538 -1.1675 0.0360 19 6 1.4000 -2.4476 -0.0422 20 6 2.1039 -3.6339 -0.1968 21 6 1.3853 -4.8331 -0.2351 22 6 2.0033 -6.0955 -0.3883 23 8 3.3460 -6.2037 -0.5067 24 7 1.2276 -7.1695 -0.4113 25 6 -0.0875 -7.0748 -0.2956 26 7 -0.7142 -5.9299 -0.1523 27 6 -0.0274 -4.7834 -0.1162 28 6 -0.6490 -3.5320 0.0412 29 7 0.0705 -2.4386 0.0655 30 1 -0.3634 -0.1115 1.0216 31 1 -0.3634 0.9405 -0.4142 32 1 -0.3633 -0.8289 -0.6075 33 1 1.5706 2.0501 0.4297 34 1 3.1057 1.1640 0.5936 35 1 1.1419 1.1852 -3.0693 36 1 0.4672 2.2647 -1.7724 37 1 2.7810 2.8763 -3.7513 38 1 1.6124 4.0510 -3.0044 39 1 3.1532 6.6138 -2.6277 40 1 3.1803 -3.6310 -0.2850 41 1 3.6648 -6.1642 -1.4188 42 1 -0.6728 -7.9821 -0.3212 43 1 -1.7231 -3.4724 0.1382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085950377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:23 Heat of formation + Delta-G solvation = 95.059008 kcal Electronic energy + Delta-G solvation = -29207.641440 eV Core-core repulsion = 25063.999342 eV Total energy + Delta-G solvation = -4143.642098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.29308 -40.30556 -38.86171 -38.26891 -37.65886 -35.31711 -33.92979 -33.10283 -32.12611 -31.16433 -28.62345 -27.83919 -26.68946 -26.02569 -25.33689 -23.41488 -23.29623 -22.72081 -20.78125 -20.00414 -19.18122 -19.04133 -18.14021 -17.65666 -16.70679 -16.54929 -16.06539 -15.74388 -15.68101 -15.21675 -14.98173 -14.86206 -14.77808 -14.41932 -14.10307 -13.76792 -13.41369 -13.19824 -12.86864 -12.78760 -12.47177 -12.33011 -12.08583 -11.48300 -11.42587 -11.40370 -11.06373 -10.88783 -10.73505 -10.69410 -10.43036 -10.34656 -10.11341 -9.79906 -9.71451 -9.62649 -9.38529 -9.04627 -8.75363 -8.30938 -6.83732 -5.72759 -3.06039 -0.69285 -0.17151 0.96985 2.03897 2.55236 2.91646 3.00513 3.34926 3.40870 3.46808 3.48903 3.49376 3.50119 3.71039 3.92079 4.08327 4.42484 4.50088 4.53744 4.87429 5.02572 5.15742 5.19844 5.40530 5.49328 5.52164 5.59962 5.62900 5.74883 5.85273 5.97918 6.11987 6.20965 6.24350 6.31103 6.46822 6.61989 6.65136 6.72748 6.83240 7.09154 7.28286 7.36909 7.45775 7.53804 7.63013 8.02601 8.17776 9.08234 9.74661 10.64238 11.43485 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.002295 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.844625 B =12196.005703 C =12649.534824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.582 5.582 3 C 0.116 3.884 4 C 0.131 3.869 5 H 0.047 0.953 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.602 5.602 9 C -0.220 4.220 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.561 3.439 18 O -0.531 6.531 19 C 0.062 3.938 20 C -0.046 4.046 21 C -0.161 4.161 22 C 0.423 3.577 23 O -0.464 6.464 24 N -0.537 5.537 25 C 0.329 3.671 26 N -0.495 5.495 27 C 0.129 3.871 28 C 0.150 3.850 29 N -0.419 5.419 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.165 0.835 41 H 0.419 0.581 42 H 0.208 0.792 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 -25.275 2.367 27.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.312 5.312 3 C -0.007 4.007 4 C 0.023 3.977 5 H 0.064 0.936 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.328 5.328 9 C -0.347 4.347 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.346 3.654 18 O -0.408 6.408 19 C -0.064 4.064 20 C -0.070 4.070 21 C -0.172 4.172 22 C 0.221 3.779 23 O -0.273 6.273 24 N -0.262 5.262 25 C 0.040 3.960 26 N -0.212 5.212 27 C -0.002 4.002 28 C -0.024 4.024 29 N -0.131 5.131 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.182 0.818 41 H 0.282 0.718 42 H 0.224 0.776 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.349 -24.796 3.133 27.051 hybrid contribution 1.643 0.531 -0.118 1.731 sum -8.706 -24.264 3.015 25.955 Atomic orbital electron populations 1.22412 0.78310 1.03526 1.02450 1.47725 1.07946 1.05638 1.69890 1.21914 0.97003 0.82506 0.99289 1.22515 0.93823 0.88606 0.92751 0.93563 1.23755 0.97485 0.99313 0.98982 1.22308 0.90745 0.95737 0.88193 1.46067 1.60485 1.04379 1.21901 1.19074 1.22372 0.88003 1.05284 0.90328 1.24775 1.00801 0.96837 0.98063 1.69831 1.46102 1.15753 1.25103 0.86071 0.79373 0.81326 0.79169 1.20436 1.21824 1.21734 1.17687 0.86571 0.82786 0.78309 1.90830 1.12617 1.86591 1.50730 1.21267 0.89483 0.94590 1.01039 1.22077 1.02490 0.89661 0.92734 1.19744 0.95658 0.95423 1.06380 1.19579 0.84800 0.86416 0.87088 1.84621 1.13951 1.94786 1.33938 1.68068 1.07634 1.33537 1.17007 1.24949 0.86197 0.96152 0.88698 1.68725 1.39672 0.98049 1.14710 1.20125 0.89264 0.95169 0.95643 1.23281 1.01220 0.84205 0.93699 1.68141 1.06635 1.29419 1.08891 0.92721 0.91465 0.88175 0.89411 0.90521 0.93515 0.90813 0.95986 0.90374 0.93791 0.81766 0.71845 0.77575 0.79633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 8.99 59.85 0.54 1.43 16 2 N -0.58 -8.86 2.78 -182.68 -0.51 -9.37 16 3 C 0.12 2.13 5.25 -4.04 -0.02 2.11 16 4 C 0.13 2.75 4.53 -66.87 -0.30 2.45 16 5 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.16 -2.98 7.31 -25.79 -0.19 -3.17 16 7 C 0.16 3.70 7.65 -2.84 -0.02 3.68 16 8 N -0.60 -15.51 3.58 -169.74 -0.61 -16.12 16 9 C -0.22 -6.18 10.51 -15.06 -0.16 -6.34 16 10 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -27.41 11.32 55.49 0.63 -26.78 16 13 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 C 0.56 8.74 7.61 -12.31 -0.09 8.65 16 18 O -0.53 -9.93 15.96 5.32 0.08 -9.85 16 19 C 0.06 0.76 6.62 -83.03 -0.55 0.21 16 20 C -0.05 -0.49 9.23 -38.76 -0.36 -0.85 16 21 C -0.16 -1.52 5.76 -106.71 -0.61 -2.13 16 22 C 0.42 3.61 7.91 -16.07 -0.13 3.48 16 23 O -0.46 -3.16 13.04 -17.37 -0.23 -3.39 16 24 N -0.54 -4.53 10.43 -14.23 -0.15 -4.68 16 25 C 0.33 2.29 12.21 -92.08 -1.12 1.17 16 26 N -0.50 -4.10 10.46 -12.54 -0.13 -4.23 16 27 C 0.13 1.17 6.64 -84.78 -0.56 0.60 16 28 C 0.15 1.23 11.26 -17.05 -0.19 1.04 16 29 N -0.42 -4.30 5.91 -9.47 -0.06 -4.35 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.79 6.66 -51.93 -0.35 0.44 16 32 H 0.10 1.08 5.26 -52.37 -0.28 0.80 16 33 H 0.09 1.62 8.03 -51.93 -0.42 1.20 16 34 H 0.08 1.54 7.56 -51.93 -0.39 1.15 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 2.04 6.97 -51.93 -0.36 1.67 16 39 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.16 1.67 7.40 -52.49 -0.39 1.28 16 41 H 0.42 0.69 9.06 45.56 0.41 1.11 16 42 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.19 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -35.84 364.03 -8.59 -44.43 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.21 Total: -0.51 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: -3.87 Total: 12.00 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.82 Total: -65.53 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.14 Total: -13.23 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.84 -8.59 -44.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085950377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.490 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds