Wall clock time and date at job start Wed Apr 1 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99995 * 2 1 4 4 C 1.52997 * 109.46947 * 264.71628 * 3 2 1 5 5 H 1.09000 * 112.96705 * 294.16417 * 4 3 2 6 6 C 1.53942 * 113.77011 * 65.84787 * 4 3 2 7 7 C 1.53948 * 86.29334 * 137.90880 * 6 4 3 8 8 N 1.47583 * 113.76906 * 162.48902 * 4 3 2 9 9 C 1.36940 * 134.49054 * 41.06727 * 8 4 3 10 10 H 1.07996 * 120.00180 * 4.91615 * 9 8 4 11 11 C 1.38818 * 119.99810 * 184.91371 * 9 8 4 12 12 N 1.31619 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99864 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47493 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46852 * 120.00021 * 13 11 9 16 16 H 1.48493 * 109.47427 * 239.99985 * 13 11 9 17 17 C 1.34780 * 119.99894 * 179.97438 * 2 1 3 18 18 O 1.21549 * 119.99823 * 181.92902 * 17 2 1 19 19 C 1.47885 * 119.99822 * 1.93625 * 17 2 1 20 20 C 1.38805 * 119.32562 * 172.61314 * 19 17 2 21 21 C 1.39863 * 118.37837 * 180.02562 * 20 19 17 22 22 C 1.41390 * 122.95216 * 180.02562 * 21 20 19 23 23 O 1.35224 * 120.99300 * 0.02562 * 22 21 20 24 24 N 1.32496 * 118.01197 * 179.97438 * 22 21 20 25 25 C 1.32359 * 121.48212 * 0.02562 * 24 22 21 26 26 N 1.31307 * 123.09945 * 0.02562 * 25 24 22 27 27 C 1.33696 * 120.36781 * 359.97438 * 26 25 24 28 28 C 1.40611 * 122.62571 * 180.28585 * 27 26 25 29 29 N 1.30912 * 120.16049 * 180.23337 * 28 27 26 30 30 H 1.09001 * 109.47746 * 263.76966 * 1 2 3 31 31 H 1.09005 * 109.47378 * 23.76920 * 1 2 3 32 32 H 1.09000 * 109.47034 * 143.76489 * 1 2 3 33 33 H 1.09007 * 109.46915 * 24.71788 * 3 2 1 34 34 H 1.09001 * 109.47382 * 144.71645 * 3 2 1 35 35 H 1.09000 * 113.74595 * 252.25047 * 6 4 3 36 36 H 1.09005 * 113.74623 * 23.45365 * 6 4 3 37 37 H 1.08991 * 113.76942 * 90.69149 * 7 6 4 38 38 H 1.09002 * 113.76663 * 221.98142 * 7 6 4 39 39 H 0.96999 * 119.99913 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.81239 * 0.04159 * 20 19 17 41 41 H 0.96700 * 113.99609 * 269.97190 * 23 22 21 42 42 H 1.07997 * 118.45080 * 179.97438 * 25 24 22 43 43 H 1.08012 * 119.91664 * 359.97273 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5675 1.6439 -1.4364 5 1 3.2772 0.9506 -1.8877 6 6 1.3526 1.9566 -2.3286 7 6 2.1833 3.1313 -2.8763 8 7 2.9339 3.0636 -1.6047 9 6 3.6717 3.9573 -0.8752 10 1 4.1975 3.6289 0.0091 11 6 3.7437 5.2855 -1.2725 12 7 3.1025 5.6858 -2.3499 13 14 4.7495 6.5048 -0.2770 14 1 5.3679 5.8087 0.8798 15 1 5.8158 7.0830 -1.1338 16 1 3.8651 7.5919 0.2139 17 6 2.1389 -1.1672 0.0005 18 8 3.3538 -1.1675 0.0360 19 6 1.4000 -2.4476 -0.0422 20 6 2.1039 -3.6339 -0.1968 21 6 1.3853 -4.8331 -0.2351 22 6 2.0033 -6.0955 -0.3883 23 8 3.3460 -6.2037 -0.5067 24 7 1.2276 -7.1695 -0.4113 25 6 -0.0875 -7.0748 -0.2956 26 7 -0.7142 -5.9299 -0.1523 27 6 -0.0274 -4.7834 -0.1162 28 6 -0.6490 -3.5320 0.0412 29 7 0.0705 -2.4386 0.0655 30 1 -0.3634 -0.1115 1.0216 31 1 -0.3634 0.9405 -0.4142 32 1 -0.3633 -0.8289 -0.6075 33 1 1.5706 2.0501 0.4297 34 1 3.1057 1.1640 0.5936 35 1 1.1419 1.1852 -3.0693 36 1 0.4672 2.2647 -1.7724 37 1 2.7810 2.8763 -3.7513 38 1 1.6124 4.0510 -3.0044 39 1 3.1532 6.6138 -2.6277 40 1 3.1803 -3.6310 -0.2850 41 1 3.6648 -6.1642 -1.4188 42 1 -0.6728 -7.9821 -0.3212 43 1 -1.7231 -3.4724 0.1382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085950377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:21 Heat of formation + Delta-G solvation = 67.852892 kcal Electronic energy + Delta-G solvation = -29208.821186 eV Core-core repulsion = 25063.999342 eV Total energy + Delta-G solvation = -4144.821844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.96713 -41.35690 -39.92467 -39.27859 -38.77057 -36.59911 -34.58502 -34.24071 -33.80291 -31.98325 -29.96849 -29.85940 -27.67996 -26.73714 -26.25810 -25.31807 -24.30248 -23.92557 -21.86245 -20.94019 -20.64529 -19.76961 -19.18925 -18.64780 -18.33327 -17.45811 -17.09239 -17.01684 -16.69745 -16.51403 -16.05768 -15.90178 -15.63970 -15.57217 -15.27392 -15.18659 -14.59669 -14.19553 -14.08990 -13.94943 -13.80459 -13.51917 -13.32194 -13.23071 -12.92589 -12.55271 -12.45650 -12.25081 -12.13450 -12.04850 -11.80844 -11.58025 -11.49241 -11.39432 -11.33854 -10.87917 -10.83437 -10.27282 -9.87034 -9.53575 -8.90023 -7.89034 -5.23790 -1.35753 -0.87422 0.28021 1.22528 1.44648 1.45560 1.55842 1.78855 1.97596 2.10959 2.47462 2.72636 2.73261 2.85939 2.95616 3.16852 3.30457 3.39062 3.45495 3.66278 3.86718 3.96493 4.12830 4.24583 4.27503 4.32398 4.46870 4.51182 4.54255 4.70252 4.88162 4.92646 4.95473 4.98195 5.00985 5.04693 5.24222 5.30477 5.48222 5.57126 5.59390 5.72675 5.95987 6.25456 6.30256 6.43080 6.76983 6.93219 6.99309 7.61397 8.57427 9.26968 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.002295 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.844625 B =12196.005703 C =12649.534824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.582 5.582 3 C 0.132 3.868 4 C 0.132 3.868 5 H 0.030 0.970 6 C -0.122 4.122 7 C 0.147 3.853 8 N -0.629 5.629 9 C -0.229 4.229 10 H 0.077 0.923 11 C -0.065 4.065 12 N -0.951 5.951 13 Si 0.975 3.025 14 H -0.269 1.269 15 H -0.294 1.294 16 H -0.287 1.287 17 C 0.558 3.442 18 O -0.574 6.574 19 C 0.043 3.957 20 C -0.040 4.040 21 C -0.173 4.173 22 C 0.427 3.573 23 O -0.472 6.472 24 N -0.548 5.548 25 C 0.335 3.665 26 N -0.502 5.502 27 C 0.129 3.871 28 C 0.162 3.838 29 N -0.425 5.425 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.011 0.989 38 H 0.052 0.948 39 H 0.248 0.752 40 H 0.160 0.840 41 H 0.439 0.561 42 H 0.245 0.755 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 -27.691 2.980 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.312 5.312 3 C 0.008 3.992 4 C 0.025 3.975 5 H 0.048 0.952 6 C -0.160 4.160 7 C 0.022 3.978 8 N -0.356 5.356 9 C -0.357 4.357 10 H 0.095 0.905 11 C -0.258 4.258 12 N -0.600 5.600 13 Si 0.804 3.196 14 H -0.193 1.193 15 H -0.221 1.221 16 H -0.214 1.214 17 C 0.346 3.654 18 O -0.454 6.454 19 C -0.082 4.082 20 C -0.064 4.064 21 C -0.184 4.184 22 C 0.225 3.775 23 O -0.284 6.284 24 N -0.274 5.274 25 C 0.048 3.952 26 N -0.218 5.218 27 C -0.003 4.003 28 C -0.013 4.013 29 N -0.137 5.137 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.178 0.822 41 H 0.306 0.694 42 H 0.261 0.739 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.395 -27.256 3.738 30.174 hybrid contribution 2.260 1.032 -0.335 2.507 sum -10.135 -26.223 3.404 28.319 Atomic orbital electron populations 1.22619 0.75874 1.04345 1.03721 1.47749 1.09219 1.04373 1.69822 1.21450 0.96535 0.84256 0.96934 1.22564 0.94191 0.85976 0.94756 0.95243 1.23502 0.96548 0.97451 0.98484 1.22296 0.91267 0.96685 0.87580 1.46463 1.60361 1.06185 1.22565 1.19368 1.22170 0.88837 1.05367 0.90542 1.25580 1.02341 0.98555 0.99333 1.70006 1.47621 1.15746 1.26634 0.85054 0.77716 0.78912 0.77922 1.19323 1.22143 1.21401 1.18192 0.86306 0.83878 0.77066 1.90796 1.14610 1.87395 1.52595 1.20704 0.90390 0.93005 1.04055 1.22005 1.02338 0.89779 0.92240 1.19797 0.96091 0.95237 1.07240 1.19666 0.85320 0.86220 0.86245 1.84575 1.13258 1.94660 1.35921 1.68203 1.08350 1.33316 1.17546 1.25766 0.86018 0.97031 0.86414 1.68826 1.39485 0.98049 1.15484 1.20375 0.89123 0.95985 0.94773 1.23793 1.02320 0.83255 0.91888 1.68021 1.05566 1.30399 1.09696 0.91434 0.91159 0.86622 0.89295 0.92942 0.90415 0.89060 0.97150 0.92920 0.94258 0.82231 0.69417 0.73922 0.76322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.63 8.99 127.77 1.15 2.78 16 2 N -0.58 -17.41 2.78 -850.14 -2.37 -19.78 16 3 C 0.13 4.93 5.25 86.38 0.45 5.39 16 4 C 0.13 5.61 4.53 45.09 0.20 5.81 16 5 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 6 C -0.12 -4.49 7.31 31.25 0.23 -4.27 16 7 C 0.15 7.14 7.65 86.44 0.66 7.81 16 8 N -0.63 -33.15 3.58 -690.93 -2.48 -35.62 16 9 C -0.23 -13.18 10.51 84.03 0.88 -12.29 16 10 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 11 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 12 N -0.95 -58.05 11.32 21.65 0.25 -57.80 16 13 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 17 C 0.56 17.47 7.61 86.80 0.66 18.13 16 18 O -0.57 -22.29 15.96 -3.87 -0.06 -22.35 16 19 C 0.04 1.01 6.62 41.60 0.28 1.29 16 20 C -0.04 -0.83 9.23 22.80 0.21 -0.62 16 21 C -0.17 -2.97 5.76 -21.21 -0.12 -3.09 16 22 C 0.43 6.53 7.91 85.37 0.68 7.20 16 23 O -0.47 -5.80 13.04 -85.05 -1.11 -6.91 16 24 N -0.55 -7.88 10.43 -311.93 -3.25 -11.13 16 25 C 0.34 3.58 12.21 180.86 2.21 5.79 16 26 N -0.50 -6.68 10.46 -193.58 -2.02 -8.71 16 27 C 0.13 2.00 6.64 40.33 0.27 2.26 16 28 C 0.16 2.17 11.26 85.41 0.96 3.13 16 29 N -0.42 -7.78 5.91 -183.87 -1.09 -8.87 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.47 6.66 -2.38 -0.02 1.46 16 32 H 0.12 2.18 5.26 -3.25 -0.02 2.16 16 33 H 0.09 3.28 8.03 -2.38 -0.02 3.26 16 34 H 0.05 2.19 7.56 -2.39 -0.02 2.17 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.09 3.07 6.95 -2.38 -0.02 3.06 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.05 2.82 6.97 -2.39 -0.02 2.81 16 39 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.16 3.33 7.40 -2.91 -0.02 3.30 16 41 H 0.44 0.88 9.06 -74.06 -0.67 0.21 16 42 H 0.25 0.50 8.06 -2.91 -0.02 0.48 16 43 H 0.22 1.35 8.06 -2.90 -0.02 1.32 16 Total: -1.00 -79.75 364.03 -0.51 -80.26 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.41 Total: 6.07 kcal Atomic # 6 Polarization: 26.82 SS G_CDS: 9.18 Total: 36.00 kcal Atomic # 7 Polarization: -130.95 SS G_CDS: -10.96 Total: -141.91 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.17 Total: -29.27 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -79.75 -0.51 -80.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085950377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.110 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds