Wall clock time and date at job start Wed Apr 1 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35517 * 116.99556 * 2 1 4 4 C 1.39430 * 120.47276 * 179.97438 * 3 2 1 5 5 C 1.38186 * 118.46962 * 179.97438 * 4 3 2 6 6 N 1.32486 * 119.24397 * 359.97438 * 5 4 3 7 7 C 1.32292 * 120.90929 * 359.97438 * 6 5 4 8 8 O 1.35454 * 119.16842 * 180.02562 * 7 6 5 9 9 C 1.42906 * 116.99756 * 359.97438 * 8 7 6 10 10 H 1.09002 * 110.63063 * 26.89676 * 9 8 7 11 11 C 1.55140 * 110.85827 * 263.68636 * 9 8 7 12 12 C 1.54909 * 101.65214 * 205.89507 * 11 9 8 13 13 N 1.47841 * 104.79704 * 37.07022 * 12 11 9 14 14 C 1.38824 * 111.00134 * 213.63258 * 13 12 11 15 15 C 1.39966 * 119.97091 * 245.92335 * 14 13 12 16 16 N 1.32119 * 120.31253 * 179.97438 * 15 14 13 17 17 C 1.31935 * 120.27912 * 359.74936 * 16 15 14 18 18 C 1.40683 * 119.92781 * 0.50630 * 17 16 15 19 19 C 1.41272 * 120.15405 * 179.74646 * 18 17 16 20 20 H 1.08003 * 119.99628 * 155.24664 * 19 18 17 21 21 C 1.40055 * 120.00470 * 335.24913 * 19 18 17 22 22 N 1.30731 * 119.99461 * 330.22645 * 21 19 18 23 23 Si 1.86801 * 120.00118 * 149.94519 * 21 19 18 24 24 H 1.48498 * 109.47010 * 180.27951 * 23 21 19 25 25 H 1.48503 * 109.46966 * 300.27507 * 23 21 19 26 26 H 1.48493 * 109.47351 * 60.27787 * 23 21 19 27 27 N 1.32234 * 119.96398 * 65.90129 * 14 13 12 28 28 C 1.47447 * 108.56761 * 335.90788 * 13 12 11 29 29 N 1.32315 * 121.66874 * 0.27836 * 7 6 5 30 30 H 1.09003 * 109.47714 * 300.00217 * 1 2 3 31 31 H 1.09003 * 109.47534 * 60.00509 * 1 2 3 32 32 H 1.09003 * 109.47110 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.76459 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.37761 * 180.02562 * 5 4 3 35 35 H 1.09004 * 110.99061 * 323.99024 * 11 9 8 36 36 H 1.09001 * 110.99078 * 87.76646 * 11 9 8 37 37 H 1.08997 * 110.37180 * 278.23914 * 12 11 9 38 38 H 1.09002 * 110.36831 * 155.89836 * 12 11 9 39 39 H 1.07992 * 119.84237 * 359.97438 * 15 14 13 40 40 H 1.07994 * 120.03716 * 180.25114 * 17 16 15 41 41 H 0.97001 * 120.00270 * 353.60348 * 22 21 19 42 42 H 1.08996 * 109.88897 * 120.39511 * 28 13 12 43 43 H 1.09000 * 109.88118 * 241.58401 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4358 1.2921 0.0005 5 6 4.0196 2.5445 0.0000 6 7 3.2453 3.6196 -0.0016 7 6 1.9271 3.5076 -0.0031 8 8 1.1693 4.6303 -0.0052 9 6 1.8616 5.8804 -0.0050 10 1 2.8443 5.7753 -0.4648 11 6 1.9875 6.4420 1.4357 12 6 2.1023 7.9637 1.1694 13 7 1.1960 8.2170 0.0292 14 6 1.6891 9.2290 -0.7831 15 6 0.9973 10.4413 -0.8877 16 7 1.4608 11.4092 -1.6583 17 6 2.5827 11.2433 -2.3324 18 6 3.2841 10.0273 -2.2396 19 6 4.4830 9.8426 -2.9636 20 1 5.2168 9.1285 -2.6199 21 6 4.7203 10.5854 -4.1270 22 7 3.7170 10.9802 -4.8663 23 14 6.4697 11.0189 -4.6179 24 1 6.4496 11.8095 -5.8748 25 1 7.1024 11.8200 -3.5394 26 1 7.2478 9.7720 -4.8298 27 7 2.8122 9.0469 -1.4569 28 6 1.0334 6.9628 -0.7289 29 7 1.3303 2.3268 0.0024 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0435 0.3993 0.0005 34 1 5.0948 2.6459 -0.0001 35 1 1.0977 6.2143 2.0226 36 1 2.8838 6.0621 1.9259 37 1 3.1267 8.2265 0.9056 38 1 1.7783 8.5275 2.0442 39 1 0.0804 10.5861 -0.3358 40 1 2.9601 12.0386 -2.9580 41 1 2.8169 10.6816 -4.6620 42 1 -0.0176 6.6746 -0.7480 43 1 1.4029 7.0939 -1.7460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158446930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:04 Heat of formation + Delta-G solvation = 38.317373 kcal Electronic energy + Delta-G solvation = -29041.501307 eV Core-core repulsion = 24895.398706 eV Total energy + Delta-G solvation = -4146.102600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57070 -40.12179 -39.31457 -38.35144 -37.05763 -34.46247 -33.58736 -32.69180 -31.55210 -30.95738 -28.69469 -28.12731 -27.82352 -26.01477 -24.25197 -24.14906 -22.97029 -22.13983 -21.24498 -20.56862 -19.37344 -18.44810 -18.34912 -17.27471 -16.73701 -16.52579 -16.06154 -15.69811 -15.48721 -15.35918 -15.30914 -14.62463 -14.41344 -14.20823 -14.01433 -13.62608 -13.46262 -13.29219 -12.65371 -12.51736 -12.37739 -12.30928 -12.00725 -11.90910 -11.66280 -11.44644 -11.25766 -11.23610 -10.96365 -10.73512 -10.54201 -10.39625 -10.19838 -10.05323 -9.76929 -9.53056 -9.23248 -9.01387 -8.54427 -7.92751 -7.58272 -7.53884 -4.87526 0.80790 0.89231 2.10163 2.24773 2.60927 2.72824 3.03846 3.13039 3.25952 3.53393 3.81253 3.82203 4.12930 4.26892 4.39229 4.56834 4.64606 4.75798 4.89139 4.94923 4.97585 5.10568 5.23625 5.28277 5.31623 5.45408 5.55535 5.62308 5.67583 5.81560 5.85658 6.00313 6.05306 6.16458 6.18958 6.25957 6.48555 6.62795 6.69909 6.88900 7.03820 7.09525 7.24614 7.35147 7.67307 7.78510 7.86667 8.17912 8.45121 8.92367 9.40711 9.68949 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.002649 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.711295 B =10566.842674 C =11886.801290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.298 6.298 3 C 0.397 3.603 4 C -0.288 4.288 5 C 0.214 3.786 6 N -0.583 5.583 7 C 0.545 3.455 8 O -0.276 6.276 9 C 0.078 3.922 10 H 0.110 0.890 11 C -0.139 4.139 12 C 0.054 3.946 13 N -0.465 5.465 14 C 0.267 3.733 15 C -0.080 4.080 16 N -0.421 5.421 17 C -0.048 4.048 18 C 0.217 3.783 19 C -0.478 4.478 20 H 0.089 0.911 21 C 0.042 3.958 22 N -0.769 5.769 23 Si 1.072 2.928 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.272 1.272 27 N -0.555 5.555 28 C 0.058 3.942 29 N -0.583 5.583 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.299 0.701 42 H 0.087 0.913 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -17.604 8.336 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.201 6.201 3 C 0.210 3.790 4 C -0.312 4.312 5 C 0.051 3.949 6 N -0.316 5.316 7 C 0.243 3.757 8 O -0.176 6.176 9 C 0.021 3.979 10 H 0.128 0.872 11 C -0.178 4.178 12 C -0.073 4.073 13 N -0.189 5.189 14 C 0.030 3.970 15 C -0.239 4.239 16 N -0.133 5.133 17 C -0.219 4.219 18 C 0.090 3.910 19 C -0.511 4.511 20 H 0.107 0.893 21 C -0.184 4.184 22 N -0.391 5.391 23 Si 0.894 3.106 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.197 1.197 27 N -0.278 5.278 28 C -0.070 4.070 29 N -0.326 5.326 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.173 0.827 34 H 0.197 0.803 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.466 -15.955 7.396 17.592 hybrid contribution 0.032 -1.818 0.836 2.001 sum -0.434 -17.773 8.232 19.591 Atomic orbital electron populations 1.23001 0.76338 1.03414 1.03254 1.86272 1.23749 1.23473 1.86644 1.19750 0.89122 0.83915 0.86259 1.21751 0.92509 1.01260 1.15680 1.22848 1.00392 0.85670 0.85964 1.68164 1.04741 1.34949 1.23765 1.20190 0.84060 0.85614 0.85862 1.86111 1.33867 1.12089 1.85486 1.23911 0.97688 0.78787 0.97533 0.87189 1.23113 1.03037 0.95558 0.96067 1.22934 0.96310 0.94383 0.93686 1.61744 1.44807 1.04627 1.07713 1.20676 0.91357 0.92066 0.92873 1.22320 1.03639 0.91343 1.06559 1.67823 1.11489 1.30493 1.03514 1.23467 0.95231 0.98181 1.04988 1.19177 0.93013 0.88042 0.90785 1.20382 1.01269 1.21172 1.08277 0.89344 1.27302 1.07019 0.91472 0.92583 1.70456 1.03299 1.31741 1.33601 0.83536 0.71645 0.77939 0.77515 1.19477 1.19523 1.19730 1.68867 1.13241 1.31843 1.13830 1.22767 1.00551 0.86432 0.97214 1.66997 1.41543 0.97121 1.26932 0.91739 0.91689 0.88109 0.82734 0.80279 0.89869 0.90131 0.91778 0.89734 0.84503 0.83774 0.88756 0.89473 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.41 101.05 1.05 1.32 16 2 O -0.30 -3.04 10.49 -18.24 -0.19 -3.23 16 3 C 0.40 4.67 7.53 -16.71 -0.13 4.55 16 4 C -0.29 -2.74 10.12 -39.16 -0.40 -3.14 16 5 C 0.21 2.15 11.29 -17.29 -0.20 1.95 16 6 N -0.58 -8.03 8.64 -14.80 -0.13 -8.15 16 7 C 0.54 8.22 8.49 -91.28 -0.77 7.45 16 8 O -0.28 -4.42 9.93 -18.05 -0.18 -4.60 16 9 C 0.08 1.26 3.22 -24.91 -0.08 1.18 16 10 H 0.11 1.92 6.92 -51.93 -0.36 1.56 16 11 C -0.14 -1.99 6.81 -24.59 -0.17 -2.16 16 12 C 0.05 0.88 6.64 -2.30 -0.02 0.87 16 13 N -0.46 -8.83 5.16 -169.83 -0.88 -9.70 16 14 C 0.27 6.08 5.17 -155.02 -0.80 5.28 16 15 C -0.08 -1.87 11.17 -16.78 -0.19 -2.05 16 16 N -0.42 -10.59 10.47 -12.11 -0.13 -10.72 16 17 C -0.05 -1.25 9.29 -16.58 -0.15 -1.41 16 18 C 0.22 5.69 6.12 -84.83 -0.52 5.17 16 19 C -0.48 -12.18 9.17 -37.75 -0.35 -12.53 16 20 H 0.09 2.24 8.00 -52.48 -0.42 1.82 16 21 C 0.04 0.99 4.82 -17.34 -0.08 0.91 16 22 N -0.77 -19.20 12.33 55.55 0.68 -18.51 16 23 Si 1.07 19.96 30.03 -169.99 -5.10 14.85 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 25 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 26 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 27 N -0.56 -13.86 9.18 -10.14 -0.09 -13.96 16 28 C 0.06 1.04 6.46 -2.83 -0.02 1.03 16 29 N -0.58 -8.21 9.41 -14.79 -0.14 -8.35 16 30 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.19 7.46 -51.93 -0.39 0.80 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.14 2.88 8.06 -52.49 -0.42 2.45 16 40 H 0.14 3.73 6.61 -52.49 -0.35 3.38 16 41 H 0.30 7.82 7.07 -40.82 -0.29 7.53 16 42 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 43 H 0.08 1.57 7.14 -51.93 -0.37 1.20 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -29.74 367.87 -8.61 -38.35 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.19 Total: 10.06 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -2.81 Total: 8.41 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -0.68 Total: -69.40 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.37 Total: -7.83 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.10 Total: 14.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.74 -8.61 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158446930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.671 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds