Wall clock time and date at job start Wed Apr 1 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86305 * 109.46758 * 2 1 4 4 C 1.86295 * 109.47202 * 240.00016 * 2 1 3 5 5 C 1.89998 * 109.47001 * 119.99754 * 2 1 3 6 6 C 3.07400 * 109.46973 * 119.99705 * 2 1 3 7 7 C 4.50599 * 109.46992 * 119.99762 * 2 1 3 8 8 C 1.39717 * 119.99803 * 66.92424 * 7 6 5 9 9 C 1.37592 * 120.00809 * 180.02562 * 8 7 6 10 10 C 1.39751 * 119.99316 * 0.02562 * 9 8 7 11 11 C 1.47683 * 120.00161 * 180.02562 * 10 9 8 12 12 O 1.21571 * 120.00633 * 34.15945 * 11 10 9 13 13 N 1.34783 * 119.99613 * 214.15941 * 11 10 9 14 14 C 1.47149 * 120.98520 * 6.33378 * 13 11 10 15 15 C 1.53299 * 108.38384 * 230.51281 * 14 13 11 16 16 O 1.42961 * 109.21635 * 307.69543 * 15 14 13 17 17 C 1.42956 * 114.17119 * 62.58331 * 16 15 14 18 18 C 1.47159 * 120.97961 * 186.30042 * 13 11 10 19 19 C 1.50699 * 109.68194 * 9.77223 * 18 13 11 20 20 N 1.27945 * 119.99819 * 245.28950 * 19 18 13 21 21 Si 1.86802 * 120.00388 * 65.28462 * 19 18 13 22 22 H 1.48504 * 109.46922 * 90.00015 * 21 19 18 23 23 H 1.48497 * 109.47282 * 210.00344 * 21 19 18 24 24 H 1.48501 * 109.47058 * 330.00158 * 21 19 18 25 25 C 1.39743 * 119.99500 * 0.27437 * 10 9 8 26 26 C 1.37604 * 119.99299 * 359.46878 * 25 10 9 27 27 H 1.09002 * 109.47893 * 300.00277 * 1 2 3 28 28 H 1.09003 * 109.47366 * 60.00141 * 1 2 3 29 29 H 1.08996 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46514 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47500 * 299.99372 * 3 2 1 32 32 H 1.08999 * 109.47455 * 60.00159 * 3 2 1 33 33 H 1.08997 * 109.47420 * 299.99810 * 4 2 1 34 34 H 1.09004 * 109.47414 * 60.00381 * 4 2 1 35 35 H 1.09009 * 109.46953 * 179.97438 * 4 2 1 36 36 H 1.08004 * 119.99531 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.00449 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.67552 * 350.22651 * 14 13 11 39 39 H 1.08994 * 109.68593 * 110.78711 * 14 13 11 40 40 H 1.09000 * 109.51246 * 67.61582 * 15 14 13 41 41 H 1.08994 * 109.51050 * 187.71796 * 15 14 13 42 42 H 1.09006 * 109.51263 * 177.49085 * 17 16 15 43 43 H 1.08999 * 109.51404 * 57.33977 * 17 16 15 44 44 H 1.08997 * 109.68341 * 249.21392 * 18 13 11 45 45 H 0.96995 * 119.99975 * 179.97438 * 20 19 18 46 46 H 1.07996 * 120.00322 * 179.72586 * 25 10 9 47 47 H 1.07999 * 119.99869 * 180.27695 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4963 -0.8956 1.5514 6 6 2.8876 -1.4490 2.5100 7 6 3.3649 -2.1240 3.6792 8 6 3.7352 -3.4692 3.6069 9 6 4.1934 -4.1182 4.7304 10 6 4.2878 -3.4318 5.9440 11 6 4.7800 -4.1280 7.1499 12 8 5.6356 -4.9858 7.0499 13 7 4.2807 -3.8122 8.3613 14 6 3.1504 -2.8795 8.4951 15 6 3.5242 -1.8124 9.5304 16 8 3.9634 -2.4541 10.7300 17 6 5.1402 -3.2500 10.5711 18 6 4.8492 -4.3907 9.5892 19 6 6.1281 -5.1179 9.2627 20 7 6.1989 -6.3865 9.4132 21 14 7.6099 -4.1674 8.6382 22 1 8.4417 -3.7347 9.7899 23 1 8.4158 -5.0378 7.7449 24 1 7.1503 -2.9739 7.8835 25 6 3.9114 -2.0880 6.0177 26 6 3.4582 -1.4379 4.8927 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.5739 1.7565 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2704 0.8900 33 1 2.1207 -1.9059 -1.5211 34 1 2.1207 -0.3643 -2.4111 35 1 3.5741 -0.8778 -1.5213 36 1 3.6611 -4.0000 2.6692 37 1 4.4793 -5.1581 4.6745 38 1 2.9506 -2.4047 7.5345 39 1 2.2653 -3.4207 8.8290 40 1 4.3265 -1.1884 9.1366 41 1 2.6535 -1.1931 9.7455 42 1 5.4318 -3.6655 11.5357 43 1 5.9483 -2.6312 10.1811 44 1 4.1350 -5.0841 10.0332 45 1 7.0219 -6.8547 9.2027 46 1 3.9800 -1.5586 6.9565 47 1 3.1716 -0.3981 4.9486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189169528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:35 Heat of formation + Delta-G solvation = 16.889049 kcal Electronic energy + Delta-G solvation = -27174.879495 eV Core-core repulsion = 23448.645993 eV Total energy + Delta-G solvation = -3726.233502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25014 -40.25626 -39.29863 -36.68064 -36.08499 -34.59222 -32.83764 -32.07668 -31.23578 -29.68540 -29.25213 -28.52148 -28.51741 -26.05970 -25.42333 -24.00538 -23.24727 -22.07940 -20.51856 -19.74678 -18.62489 -18.07723 -17.73610 -17.25492 -16.66632 -16.58140 -16.11785 -15.96584 -15.91125 -15.71434 -15.03533 -14.92401 -14.80912 -14.41699 -14.35034 -14.22436 -14.09666 -14.06178 -13.78848 -13.70633 -13.41535 -13.41012 -13.19718 -13.09211 -12.90426 -12.60843 -12.54239 -12.27210 -12.22438 -12.19231 -11.96230 -11.67746 -11.57437 -11.37648 -11.02532 -10.80800 -10.66948 -10.18939 -9.90626 -9.64205 -9.55979 -0.63871 0.13231 0.82616 1.13635 1.20556 1.27910 1.45056 1.49293 1.50955 1.76435 1.82871 2.07218 2.24786 2.26981 2.28743 2.55254 2.91067 3.08819 3.33581 3.56230 3.64932 3.70029 3.70256 3.79858 3.84808 3.91032 4.04742 4.08994 4.26073 4.33441 4.52571 4.55668 4.57017 4.61087 4.61256 4.65330 4.65647 4.66007 4.68055 4.73676 4.77448 4.90966 4.97693 5.06954 5.19076 5.24253 5.35234 5.44693 5.45171 5.58668 5.85335 6.01731 6.57446 6.81578 7.02178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.144 2.856 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.377 4.377 6 C -0.151 4.151 7 C 0.035 3.965 8 C -0.101 4.101 9 C -0.057 4.057 10 C -0.128 4.128 11 C 0.567 3.433 12 O -0.517 6.517 13 N -0.601 5.601 14 C 0.040 3.960 15 C 0.041 3.959 16 O -0.366 6.366 17 C 0.053 3.947 18 C 0.143 3.857 19 C 0.010 3.990 20 N -0.624 5.624 21 Si 0.968 3.032 22 H -0.261 1.261 23 H -0.247 1.247 24 H -0.252 1.252 25 C -0.099 4.099 26 C -0.103 4.103 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.340 0.660 46 H 0.145 0.855 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 5.613 -2.421 6.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.329 2.671 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.411 4.411 6 C -0.151 4.151 7 C 0.034 3.966 8 C -0.119 4.119 9 C -0.075 4.075 10 C -0.131 4.131 11 C 0.358 3.642 12 O -0.394 6.394 13 N -0.335 5.335 14 C -0.082 4.082 15 C -0.036 4.036 16 O -0.283 6.283 17 C -0.025 4.025 18 C 0.039 3.961 19 C -0.237 4.237 20 N -0.241 5.241 21 Si 0.788 3.212 22 H -0.187 1.187 23 H -0.171 1.171 24 H -0.175 1.175 25 C -0.117 4.117 26 C -0.120 4.120 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.078 0.922 44 H 0.125 0.875 45 H 0.158 0.842 46 H 0.163 0.837 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.514 4.827 -2.172 5.859 hybrid contribution 0.662 -0.293 -0.232 0.760 sum -1.852 4.534 -2.403 5.456 Atomic orbital electron populations 1.26119 1.19900 1.05017 1.05009 0.77037 0.66042 0.64691 0.59286 1.26118 1.06734 1.18193 1.05008 1.26125 1.06742 1.08465 1.14786 1.36179 0.99358 1.01059 1.04489 1.20893 1.00129 0.98879 0.95205 1.16412 0.97421 0.92708 0.90021 1.21253 0.98355 0.93256 0.99045 1.21156 0.95354 1.00627 0.90410 1.19851 1.04395 0.94935 0.93924 1.18373 0.81456 0.81566 0.82831 1.90468 1.32536 1.32278 1.84106 1.48140 1.34066 1.46205 1.05105 1.23342 0.89257 0.92291 1.03271 1.23085 1.01133 0.93839 0.85565 1.88054 1.44169 1.64472 1.31637 1.23026 0.87879 0.91186 1.00419 1.21098 0.94781 0.95425 0.84751 1.29827 1.03010 0.97863 0.93020 1.67981 1.32504 1.09835 1.13774 0.85209 0.76032 0.80182 0.79825 1.18730 1.17074 1.17544 1.21442 0.97593 0.93639 0.99000 1.21193 0.99517 1.00320 0.91013 0.90877 0.90320 0.90875 0.90883 0.90318 0.90881 0.90873 0.90324 0.90879 0.84547 0.84144 0.85905 0.89373 0.92122 0.86649 0.86268 0.92231 0.87510 0.84235 0.83747 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.28 8.65 101.05 0.87 2.15 16 2 Si 1.14 -3.93 14.26 -169.99 -2.42 -6.35 16 3 C -0.45 1.29 8.65 101.05 0.87 2.16 16 4 C -0.45 1.20 8.65 101.05 0.87 2.08 16 5 C -0.38 -0.22 12.14 29.55 0.36 0.14 16 6 C -0.15 -0.33 13.23 -38.84 -0.51 -0.84 16 7 C 0.03 0.05 5.73 -106.87 -0.61 -0.56 16 8 C -0.10 -0.10 9.73 -39.27 -0.38 -0.49 16 9 C -0.06 -0.08 9.59 -39.25 -0.38 -0.45 16 10 C -0.13 -0.17 5.47 -104.91 -0.57 -0.75 16 11 C 0.57 1.56 6.21 -12.40 -0.08 1.48 16 12 O -0.52 -2.71 11.42 5.30 0.06 -2.65 16 13 N -0.60 -0.56 2.95 -167.22 -0.49 -1.05 16 14 C 0.04 -0.08 5.74 -3.53 -0.02 -0.10 16 15 C 0.04 -0.11 6.75 37.31 0.25 0.14 16 16 O -0.37 0.01 10.74 -35.23 -0.38 -0.37 16 17 C 0.05 -0.02 6.01 37.31 0.22 0.20 16 18 C 0.14 0.18 3.27 -68.57 -0.22 -0.05 16 19 C 0.01 0.03 3.08 -13.90 -0.04 -0.01 16 20 N -0.62 -2.41 13.76 56.23 0.77 -1.64 16 21 Si 0.97 2.73 23.70 -169.99 -4.03 -1.30 16 22 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 23 H -0.25 -1.08 7.11 56.52 0.40 -0.68 16 24 H -0.25 -0.77 6.91 56.52 0.39 -0.38 16 25 C -0.10 0.07 7.41 -39.25 -0.29 -0.22 16 26 C -0.10 0.02 9.73 -39.26 -0.38 -0.36 16 27 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 28 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 32 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 35 H 0.07 -0.16 7.96 -51.92 -0.41 -0.58 16 36 H 0.14 -0.04 8.06 -52.48 -0.42 -0.47 16 37 H 0.14 0.13 7.98 -52.49 -0.42 -0.28 16 38 H 0.12 -0.41 3.44 -51.93 -0.18 -0.59 16 39 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 40 H 0.06 -0.21 7.79 -51.93 -0.40 -0.61 16 41 H 0.12 -0.54 8.14 -51.93 -0.42 -0.97 16 42 H 0.12 -0.22 8.14 -51.93 -0.42 -0.65 16 43 H 0.06 -0.06 6.27 -51.93 -0.33 -0.39 16 44 H 0.11 0.18 8.11 -51.93 -0.42 -0.24 16 45 H 0.34 0.92 8.23 -40.82 -0.34 0.59 16 46 H 0.15 -0.46 5.26 -52.49 -0.28 -0.73 16 47 H 0.14 -0.29 8.06 -52.49 -0.42 -0.71 16 LS Contribution 387.31 15.07 5.84 5.84 Total: 0.00 -7.74 387.31 -7.70 -15.43 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -7.00 Total: -12.43 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.04 Total: 4.52 kcal Atomic # 7 Polarization: -2.97 SS G_CDS: 0.28 Total: -2.68 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: -0.32 Total: -3.02 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -6.45 Total: -7.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -7.74 -7.70 -15.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189169528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.321 kcal (2) G-P(sol) polarization free energy of solvation -7.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds