Wall clock time and date at job start Wed Apr 1 2020 02:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99958 * 2 1 4 4 O 1.21281 * 119.99925 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99999 * 179.97438 * 3 2 1 6 6 N 1.46897 * 109.46953 * 180.02562 * 5 3 2 7 7 C 1.47898 * 111.00073 * 69.87628 * 6 5 3 8 8 C 1.55395 * 104.74867 * 213.41868 * 7 6 5 9 9 H 1.08998 * 113.06454 * 157.60798 * 8 7 6 10 10 O 1.42778 * 107.10469 * 281.72334 * 8 7 6 11 11 C 1.42658 * 115.67568 * 166.20020 * 10 8 7 12 12 C 1.53985 * 108.29935 * 295.42778 * 11 10 8 13 13 N 1.47047 * 107.13586 * 55.80960 * 12 11 10 14 14 C 1.34773 * 120.12317 * 130.14834 * 13 12 11 15 15 O 1.21287 * 120.00030 * 179.72772 * 14 13 12 16 16 C 1.50704 * 120.00266 * 359.72423 * 14 13 12 17 17 S 1.80996 * 109.47087 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99917 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00415 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99716 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00435 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99769 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 60.00524 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00621 * 22 20 18 26 26 C 1.45677 * 119.74710 * 309.87510 * 13 12 11 27 27 H 1.09000 * 109.95334 * 165.81376 * 26 13 12 28 28 C 1.47629 * 111.00162 * 309.12945 * 6 5 3 29 29 H 1.08992 * 109.46906 * 300.00065 * 1 2 3 30 30 H 1.09006 * 109.46618 * 59.99906 * 1 2 3 31 31 H 1.08999 * 109.46564 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99919 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47144 * 60.00390 * 5 3 2 34 34 H 1.08999 * 109.47281 * 300.00318 * 5 3 2 35 35 H 1.09004 * 110.38463 * 94.60234 * 7 6 5 36 36 H 1.08997 * 110.38506 * 332.23615 * 7 6 5 37 37 H 1.09010 * 109.67426 * 55.28067 * 11 10 8 38 38 H 1.08996 * 109.68342 * 175.79095 * 11 10 8 39 39 H 1.09001 * 110.03903 * 296.38334 * 12 11 10 40 40 H 1.09000 * 109.93632 * 175.17993 * 12 11 10 41 41 H 1.09001 * 109.46841 * 60.00041 * 16 14 13 42 42 H 1.08996 * 109.46854 * 300.00149 * 16 14 13 43 43 H 0.97000 * 119.99818 * 0.02562 * 21 20 18 44 44 H 1.09000 * 109.96844 * 4.04684 * 28 6 5 45 45 H 1.09007 * 109.97024 * 242.79133 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 0.0006 6 7 4.1355 2.5522 0.0011 7 6 3.8638 3.2100 1.2976 8 6 3.5948 4.6976 0.9378 9 1 3.0148 5.2224 1.6969 10 8 4.8639 5.3104 0.7089 11 6 4.8283 6.5864 0.0721 12 6 4.2603 6.4027 -1.3473 13 7 2.9503 5.7494 -1.2085 14 6 1.8716 6.2561 -1.8379 15 8 0.7932 5.7126 -1.7258 16 6 2.0054 7.4982 -2.6808 17 16 0.3943 7.9248 -3.3866 18 6 0.8316 9.3688 -4.2967 19 1 1.8520 9.7224 -4.2908 20 6 -0.1352 10.0512 -5.0221 21 7 -1.3789 9.6199 -5.0298 22 14 0.3282 11.5824 -5.9864 23 1 1.3588 11.2371 -6.9983 24 1 -0.8757 12.1208 -6.6691 25 1 0.8700 12.6070 -5.0580 26 6 2.8241 4.5489 -0.3930 27 1 1.7723 4.3437 -0.1934 28 6 3.4923 3.3412 -1.0681 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.0096 0.6533 -0.8892 34 1 4.0089 0.6536 0.8908 35 1 4.7306 3.1288 1.9535 36 1 2.9862 2.7691 1.7704 37 1 4.1904 7.2629 0.6410 38 1 5.8368 6.9956 0.0131 39 1 4.9271 5.7746 -1.9381 40 1 4.1413 7.3734 -1.8286 41 1 2.7183 7.3164 -3.4851 42 1 2.3595 8.3217 -2.0606 43 1 -1.6198 8.8254 -4.5282 44 1 2.7414 2.7364 -1.5766 45 1 4.2422 3.6817 -1.7821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217332059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:33 Heat of formation + Delta-G solvation = -82.391272 kcal Electronic energy + Delta-G solvation = -28983.087565 eV Core-core repulsion = 24934.901845 eV Total energy + Delta-G solvation = -4048.185720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25063 -39.91098 -38.35979 -36.77282 -34.82969 -34.73715 -32.51802 -32.14812 -29.83896 -28.98714 -28.31512 -27.25515 -25.26661 -24.77656 -23.60363 -21.78743 -21.19833 -20.70169 -18.87739 -18.20877 -17.83727 -17.16990 -16.81394 -16.68242 -16.03248 -15.77489 -15.64505 -15.26878 -14.83753 -14.70857 -14.33843 -13.97705 -13.90452 -13.82034 -13.57782 -13.22865 -13.05420 -12.62674 -12.59579 -12.52100 -12.35745 -12.03729 -11.84137 -11.77640 -11.71169 -11.57759 -11.45475 -10.91283 -10.62845 -10.41376 -10.16856 -10.10590 -9.55371 -9.45788 -9.39151 -9.00572 -8.65841 -8.33533 -8.20208 -6.66160 -6.61280 -3.98968 2.28793 2.76737 2.89300 2.97295 3.31734 3.38442 3.42481 3.47626 3.58326 3.71517 4.25078 4.39564 4.45059 4.49885 4.68061 4.75008 4.91232 4.94163 4.98675 5.02895 5.06860 5.15539 5.22636 5.23413 5.30732 5.35290 5.42241 5.48094 5.53868 5.58670 5.66341 5.69464 5.76248 5.90464 5.94365 5.99140 6.18772 6.50563 6.58429 6.68505 7.08905 7.10778 7.49036 7.89852 7.92300 8.50059 8.50992 9.28199 10.82628 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.002885 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.925532 B = 9701.530539 C =11116.559826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.736 5.736 3 C 0.472 3.528 4 O -0.522 6.522 5 C 0.026 3.974 6 N -0.495 5.495 7 C 0.053 3.947 8 C 0.075 3.925 9 H 0.083 0.917 10 O -0.368 6.368 11 C 0.050 3.950 12 C 0.071 3.929 13 N -0.612 5.612 14 C 0.531 3.469 15 O -0.509 6.509 16 C -0.127 4.127 17 S -0.116 6.116 18 C -0.607 4.607 19 H 0.065 0.935 20 C 0.035 3.965 21 N -0.884 5.884 22 Si 1.084 2.916 23 H -0.285 1.285 24 H -0.278 1.278 25 H -0.285 1.285 26 C 0.107 3.893 27 H 0.128 0.872 28 C 0.047 3.953 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.495 -19.534 13.762 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.389 5.389 3 C 0.257 3.743 4 O -0.398 6.398 5 C -0.106 4.106 6 N -0.217 5.217 7 C -0.075 4.075 8 C 0.016 3.984 9 H 0.101 0.899 10 O -0.287 6.287 11 C -0.027 4.027 12 C -0.052 4.052 13 N -0.348 5.348 14 C 0.319 3.681 15 O -0.383 6.383 16 C -0.278 4.278 17 S 0.110 5.890 18 C -0.755 4.755 19 H 0.084 0.916 20 C -0.175 4.175 21 N -0.518 5.518 22 Si 0.910 3.090 23 H -0.211 1.211 24 H -0.203 1.203 25 H -0.211 1.211 26 C 0.001 3.999 27 H 0.145 0.855 28 C -0.081 4.081 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.517 -18.496 12.901 25.791 hybrid contribution 1.125 -0.804 0.785 1.590 sum 13.642 -19.300 13.686 27.311 Atomic orbital electron populations 1.21554 0.79591 1.02081 1.02701 1.45961 1.07948 1.08786 1.76165 1.22108 0.92001 0.84048 0.76181 1.90793 1.70388 1.30571 1.48054 1.22572 0.88985 0.93785 1.05275 1.64059 1.53366 1.00256 1.04020 1.23149 1.01190 0.91251 0.91906 1.23536 0.85360 0.93457 0.96032 0.89890 1.87788 1.27841 1.33349 1.79678 1.23021 1.02162 0.85605 0.91918 1.22599 0.84847 0.99371 0.98396 1.47713 1.08828 1.27828 1.50453 1.20381 0.83352 0.85250 0.79138 1.90715 1.26212 1.60509 1.60822 1.23343 1.06115 0.97136 1.01226 1.84852 1.06664 1.35707 1.61745 1.23694 1.00192 1.13661 1.37959 0.91634 1.26059 0.92707 1.02530 0.96244 1.70796 1.17852 1.24181 1.38981 0.83330 0.75799 0.74040 0.75819 1.21128 1.20282 1.21135 1.22361 1.03355 0.84331 0.89827 0.85473 1.22923 0.96938 0.94248 0.94035 0.92190 0.91964 0.90797 0.76616 0.87400 0.87579 0.88866 0.91614 0.92609 0.87577 0.90387 0.88338 0.88976 0.89027 0.90985 0.91314 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.74 -5.08 5.71 -67.07 -0.38 -5.46 16 3 C 0.47 4.65 6.48 -10.98 -0.07 4.58 16 4 O -0.52 -7.60 10.76 5.56 0.06 -7.54 16 5 C 0.03 0.20 5.85 -4.98 -0.03 0.17 16 6 N -0.49 -5.30 5.42 -232.60 -1.26 -6.56 16 7 C 0.05 0.56 5.75 -2.00 -0.01 0.55 16 8 C 0.08 0.96 4.12 -24.67 -0.10 0.85 16 9 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 10 O -0.37 -4.56 10.09 -35.23 -0.36 -4.92 16 11 C 0.05 0.55 7.04 37.67 0.27 0.81 16 12 C 0.07 0.88 6.29 -3.23 -0.02 0.86 16 13 N -0.61 -9.85 2.72 -164.39 -0.45 -10.30 16 14 C 0.53 10.89 7.70 -10.99 -0.08 10.80 16 15 O -0.51 -12.50 15.27 5.55 0.08 -12.42 16 16 C -0.13 -2.70 4.50 36.01 0.16 -2.54 16 17 S -0.12 -3.22 19.60 -107.50 -2.11 -5.33 16 18 C -0.61 -17.76 9.50 30.94 0.29 -17.46 16 19 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 20 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 21 N -0.88 -27.90 13.67 55.49 0.76 -27.14 16 22 Si 1.08 25.20 29.92 -169.99 -5.09 20.11 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.11 1.63 2.58 -67.25 -0.17 1.45 16 27 H 0.13 2.39 5.42 -51.93 -0.28 2.11 16 28 C 0.05 0.64 5.60 -3.09 -0.02 0.62 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.40 1.33 8.83 -40.82 -0.36 0.97 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.51 8.08 -51.93 -0.42 0.10 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.69 6.58 -51.93 -0.34 0.35 16 37 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.90 7.54 -51.93 -0.39 0.50 16 40 H 0.10 1.16 5.95 -51.93 -0.31 0.85 16 41 H 0.09 1.82 7.99 -51.92 -0.41 1.41 16 42 H 0.09 1.79 7.61 -51.92 -0.40 1.40 16 43 H 0.28 8.98 7.13 -40.82 -0.29 8.69 16 44 H 0.07 1.04 5.82 -51.93 -0.30 0.73 16 45 H 0.08 1.05 7.22 -51.92 -0.38 0.67 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -38.67 367.17 -8.91 -47.58 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.47 Total: 3.54 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 0.76 Total: 2.91 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.33 Total: -49.47 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.21 Total: -24.87 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.11 Total: -5.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.67 -8.91 -47.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217332059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.809 kcal (2) G-P(sol) polarization free energy of solvation -38.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds