Wall clock time and date at job start Wed Apr 1 2020 02:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99958 * 2 1 4 4 O 1.21281 * 119.99925 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99999 * 179.97438 * 3 2 1 6 6 N 1.46897 * 109.46953 * 180.02562 * 5 3 2 7 7 C 1.47898 * 111.00073 * 69.87628 * 6 5 3 8 8 C 1.55395 * 104.74867 * 213.41868 * 7 6 5 9 9 H 1.08998 * 113.06454 * 157.60798 * 8 7 6 10 10 O 1.42778 * 107.10469 * 281.72334 * 8 7 6 11 11 C 1.42658 * 115.67568 * 166.20020 * 10 8 7 12 12 C 1.53985 * 108.29935 * 295.42778 * 11 10 8 13 13 N 1.47047 * 107.13586 * 55.80960 * 12 11 10 14 14 C 1.34773 * 120.12317 * 130.14834 * 13 12 11 15 15 O 1.21287 * 120.00030 * 179.72772 * 14 13 12 16 16 C 1.50704 * 120.00266 * 359.72423 * 14 13 12 17 17 S 1.80996 * 109.47087 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99917 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00415 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99716 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00435 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99769 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 60.00524 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00621 * 22 20 18 26 26 C 1.45677 * 119.74710 * 309.87510 * 13 12 11 27 27 H 1.09000 * 109.95334 * 165.81376 * 26 13 12 28 28 C 1.47629 * 111.00162 * 309.12945 * 6 5 3 29 29 H 1.08992 * 109.46906 * 300.00065 * 1 2 3 30 30 H 1.09006 * 109.46618 * 59.99906 * 1 2 3 31 31 H 1.08999 * 109.46564 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99919 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47144 * 60.00390 * 5 3 2 34 34 H 1.08999 * 109.47281 * 300.00318 * 5 3 2 35 35 H 1.09004 * 110.38463 * 94.60234 * 7 6 5 36 36 H 1.08997 * 110.38506 * 332.23615 * 7 6 5 37 37 H 1.09010 * 109.67426 * 55.28067 * 11 10 8 38 38 H 1.08996 * 109.68342 * 175.79095 * 11 10 8 39 39 H 1.09001 * 110.03903 * 296.38334 * 12 11 10 40 40 H 1.09000 * 109.93632 * 175.17993 * 12 11 10 41 41 H 1.09001 * 109.46841 * 60.00041 * 16 14 13 42 42 H 1.08996 * 109.46854 * 300.00149 * 16 14 13 43 43 H 0.97000 * 119.99818 * 0.02562 * 21 20 18 44 44 H 1.09000 * 109.96844 * 4.04684 * 28 6 5 45 45 H 1.09007 * 109.97024 * 242.79133 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 0.0006 6 7 4.1355 2.5522 0.0011 7 6 3.8638 3.2100 1.2976 8 6 3.5948 4.6976 0.9378 9 1 3.0148 5.2224 1.6969 10 8 4.8639 5.3104 0.7089 11 6 4.8283 6.5864 0.0721 12 6 4.2603 6.4027 -1.3473 13 7 2.9503 5.7494 -1.2085 14 6 1.8716 6.2561 -1.8379 15 8 0.7932 5.7126 -1.7258 16 6 2.0054 7.4982 -2.6808 17 16 0.3943 7.9248 -3.3866 18 6 0.8316 9.3688 -4.2967 19 1 1.8520 9.7224 -4.2908 20 6 -0.1352 10.0512 -5.0221 21 7 -1.3789 9.6199 -5.0298 22 14 0.3282 11.5824 -5.9864 23 1 1.3588 11.2371 -6.9983 24 1 -0.8757 12.1208 -6.6691 25 1 0.8700 12.6070 -5.0580 26 6 2.8241 4.5489 -0.3930 27 1 1.7723 4.3437 -0.1934 28 6 3.4923 3.3412 -1.0681 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.0096 0.6533 -0.8892 34 1 4.0089 0.6536 0.8908 35 1 4.7306 3.1288 1.9535 36 1 2.9862 2.7691 1.7704 37 1 4.1904 7.2629 0.6410 38 1 5.8368 6.9956 0.0131 39 1 4.9271 5.7746 -1.9381 40 1 4.1413 7.3734 -1.8286 41 1 2.7183 7.3164 -3.4851 42 1 2.3595 8.3217 -2.0606 43 1 -1.6198 8.8254 -4.5282 44 1 2.7414 2.7364 -1.5766 45 1 4.2422 3.6817 -1.7821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217332059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:32 Heat of formation + Delta-G solvation = -115.330693 kcal Electronic energy + Delta-G solvation = -28984.515925 eV Core-core repulsion = 24934.901845 eV Total energy + Delta-G solvation = -4049.614080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.28154 -40.97832 -39.67950 -37.65905 -36.08377 -35.59999 -34.77014 -33.11220 -31.33397 -29.89914 -29.39051 -28.25934 -27.09620 -26.01299 -24.62681 -22.80104 -22.36687 -21.48597 -20.58885 -19.86482 -18.73425 -18.47701 -17.91064 -17.64986 -17.06875 -16.91748 -16.62748 -16.51754 -16.35179 -15.89209 -15.73145 -15.40303 -15.20057 -14.82617 -14.64953 -14.48314 -14.32833 -14.15625 -13.98813 -13.66913 -13.55758 -13.31448 -13.16412 -12.77450 -12.74573 -12.65450 -12.53658 -12.35858 -11.96205 -11.65034 -11.58151 -11.35886 -11.19771 -11.11356 -10.99775 -10.35051 -10.16639 -9.76387 -9.38769 -8.95054 -8.92292 -6.31167 1.07937 1.35813 1.50134 1.54938 1.60040 1.79217 1.83352 2.26953 2.31988 2.56083 2.84617 3.00400 3.03859 3.35305 3.48809 3.53241 3.78072 3.87367 3.92553 4.01099 4.10372 4.16686 4.21612 4.26451 4.28929 4.38869 4.41587 4.49260 4.52471 4.61661 4.64898 4.73202 4.77896 4.87537 4.89310 4.91267 5.37146 5.42056 5.61698 5.63395 5.76755 6.08101 6.11740 6.14036 6.51447 6.94192 7.04306 7.24775 8.48126 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.002885 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.925532 B = 9701.530539 C =11116.559826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.720 5.720 3 C 0.464 3.536 4 O -0.577 6.577 5 C 0.029 3.971 6 N -0.491 5.491 7 C 0.060 3.940 8 C 0.078 3.922 9 H 0.080 0.920 10 O -0.368 6.368 11 C 0.051 3.949 12 C 0.063 3.937 13 N -0.600 5.600 14 C 0.528 3.472 15 O -0.563 6.563 16 C -0.100 4.100 17 S -0.199 6.199 18 C -0.612 4.612 19 H 0.078 0.922 20 C -0.020 4.020 21 N -0.913 5.913 22 Si 1.138 2.862 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.262 1.262 26 C 0.102 3.898 27 H 0.086 0.914 28 C 0.060 3.940 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.421 0.579 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.259 0.741 44 H 0.046 0.954 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.430 -20.047 14.394 30.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.250 3.750 4 O -0.457 6.457 5 C -0.103 4.103 6 N -0.213 5.213 7 C -0.067 4.067 8 C 0.019 3.981 9 H 0.097 0.903 10 O -0.286 6.286 11 C -0.026 4.026 12 C -0.059 4.059 13 N -0.334 5.334 14 C 0.316 3.684 15 O -0.441 6.441 16 C -0.252 4.252 17 S 0.028 5.972 18 C -0.759 4.759 19 H 0.096 0.904 20 C -0.223 4.223 21 N -0.548 5.548 22 Si 0.955 3.045 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.186 1.186 26 C -0.003 4.003 27 H 0.104 0.896 28 C -0.069 4.069 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.130 0.870 32 H 0.258 0.742 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.161 0.839 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.536 -19.091 13.574 28.673 hybrid contribution -0.035 -0.786 0.678 1.038 sum 16.502 -19.876 14.252 29.504 Atomic orbital electron populations 1.21555 0.79970 1.03855 1.00598 1.45846 1.07820 1.09112 1.74583 1.22610 0.93157 0.83872 0.75316 1.90807 1.71558 1.32589 1.50697 1.22793 0.87074 0.92314 1.08103 1.64093 1.52771 1.01342 1.03117 1.23166 1.01969 0.89549 0.92061 1.23511 0.85253 0.95189 0.94163 0.90273 1.87795 1.27151 1.33969 1.79675 1.23208 1.04038 0.85031 0.90291 1.22975 0.82886 0.99767 1.00239 1.47737 1.09098 1.27769 1.48801 1.20297 0.83762 0.84975 0.79354 1.90700 1.28523 1.61955 1.62922 1.23207 1.01851 0.98254 1.01856 1.85162 1.12816 1.36368 1.62869 1.24018 1.00791 1.13526 1.37569 0.90401 1.27907 0.91994 1.05484 0.96877 1.70919 1.19431 1.24234 1.40265 0.82710 0.76068 0.70441 0.75258 1.18633 1.20579 1.18626 1.22384 1.01853 0.84592 0.91489 0.89574 1.22677 0.95991 0.93533 0.94675 0.93649 0.94820 0.86996 0.74159 0.85210 0.83892 0.86628 0.91905 0.92923 0.83942 0.88740 0.87449 0.86983 0.86850 0.92999 0.93541 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.70 127.77 1.37 2.64 16 2 N -0.72 -9.19 5.71 -484.51 -2.77 -11.96 16 3 C 0.46 8.97 6.48 87.66 0.57 9.54 16 4 O -0.58 -17.77 10.76 -3.03 -0.03 -17.80 16 5 C 0.03 0.36 5.85 85.56 0.50 0.86 16 6 N -0.49 -9.55 5.42 -889.81 -4.82 -14.38 16 7 C 0.06 1.16 5.75 86.93 0.50 1.66 16 8 C 0.08 1.92 4.12 31.93 0.13 2.05 16 9 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 10 O -0.37 -8.13 10.09 -148.98 -1.50 -9.64 16 11 C 0.05 0.96 7.04 72.31 0.51 1.47 16 12 C 0.06 1.42 6.29 86.61 0.55 1.96 16 13 N -0.60 -19.31 2.72 -792.40 -2.15 -21.46 16 14 C 0.53 22.30 7.70 87.66 0.67 22.98 16 15 O -0.56 -29.50 15.27 -3.05 -0.05 -29.55 16 16 C -0.10 -4.26 4.50 71.24 0.32 -3.94 16 17 S -0.20 -11.44 19.60 -56.49 -1.11 -12.55 16 18 C -0.61 -35.92 9.50 67.96 0.65 -35.27 16 19 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 20 C -0.02 -1.17 5.49 84.86 0.47 -0.70 16 21 N -0.91 -59.25 13.67 21.65 0.30 -58.95 16 22 Si 1.14 49.78 29.92 68.60 2.05 51.83 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 C 0.10 3.18 2.58 45.87 0.12 3.30 16 27 H 0.09 3.50 5.42 -2.39 -0.01 3.49 16 28 C 0.06 1.62 5.60 86.38 0.48 2.11 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.42 1.75 8.83 -92.71 -0.82 0.93 16 33 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.14 0.79 8.08 -2.39 -0.02 0.77 16 35 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.27 6.58 -2.39 -0.02 1.25 16 37 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 1.88 7.54 -2.39 -0.02 1.87 16 40 H 0.11 2.23 5.95 -2.39 -0.01 2.22 16 41 H 0.11 4.30 7.99 -2.39 -0.02 4.28 16 42 H 0.11 4.30 7.61 -2.40 -0.02 4.28 16 43 H 0.26 17.58 7.13 -92.71 -0.66 16.92 16 44 H 0.05 1.46 5.82 -2.39 -0.01 1.44 16 45 H 0.07 1.97 7.22 -2.38 -0.02 1.95 16 Total: -1.00 -90.47 367.17 -2.94 -93.41 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.31 Total: 22.40 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.83 Total: 8.64 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -9.45 Total: -106.76 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -1.58 Total: -56.98 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Atomic # 16 Polarization: -11.44 SS G_CDS: -1.11 Total: -12.55 kcal Total: -90.47 -2.94 -93.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217332059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.916 kcal (2) G-P(sol) polarization free energy of solvation -90.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds