Wall clock time and date at job start Wed Apr 1 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99957 * 2 1 4 4 N 1.46497 * 109.47186 * 80.00087 * 3 2 1 5 5 C 1.34777 * 120.00144 * 94.99521 * 4 3 2 6 6 S 1.71203 * 120.00011 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99979 * 179.97438 * 5 4 3 8 8 C 1.47679 * 134.44977 * 180.02562 * 7 5 4 9 9 C 1.53393 * 85.95981 * 155.71678 * 8 7 5 10 10 C 1.47680 * 134.45336 * 359.95674 * 7 5 4 11 11 C 1.52552 * 113.84235 * 138.00910 * 9 8 7 12 12 N 1.46276 * 109.56364 * 176.53206 * 11 9 8 13 13 C 1.46502 * 118.71139 * 163.92353 * 12 11 9 14 14 C 1.52993 * 109.47055 * 90.00201 * 13 12 11 15 15 C 1.50704 * 109.47121 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00014 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99841 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99907 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47069 * 90.00363 * 19 17 15 21 21 H 1.48496 * 109.47350 * 210.00237 * 19 17 15 22 22 H 1.48500 * 109.47268 * 330.00342 * 19 17 15 23 23 C 1.33714 * 122.57160 * 343.90101 * 12 11 9 24 24 O 1.21281 * 118.38321 * 183.23645 * 23 12 11 25 25 C 1.50164 * 123.23608 * 3.26194 * 23 12 11 26 26 O 1.42674 * 113.79276 * 268.69333 * 9 8 7 27 27 H 1.08997 * 109.46862 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47166 * 299.99488 * 1 2 3 29 29 H 1.09001 * 109.46830 * 60.00410 * 1 2 3 30 30 H 1.09001 * 109.47575 * 320.00197 * 3 2 1 31 31 H 1.09000 * 109.47470 * 200.00141 * 3 2 1 32 32 H 0.97000 * 120.00132 * 274.99933 * 4 3 2 33 33 H 1.09004 * 113.79612 * 41.45570 * 8 7 5 34 34 H 1.08997 * 113.79794 * 269.97564 * 8 7 5 35 35 H 1.09000 * 113.79599 * 90.01961 * 10 7 5 36 36 H 1.08998 * 113.79242 * 318.54574 * 10 7 5 37 37 H 1.08998 * 109.45161 * 56.50631 * 11 9 8 38 38 H 1.08998 * 109.45669 * 296.56268 * 11 9 8 39 39 H 1.09002 * 109.46641 * 210.00459 * 13 12 11 40 40 H 1.08996 * 109.47135 * 330.00115 * 13 12 11 41 41 H 1.09002 * 109.47607 * 299.99667 * 14 13 12 42 42 H 1.09003 * 109.47556 * 59.99738 * 14 13 12 43 43 H 0.97006 * 119.99630 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.35610 * 102.57694 * 25 23 12 45 45 H 1.09003 * 109.35174 * 222.28063 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 1.9898 1.8491 1.3602 5 6 3.0708 1.7186 2.1545 6 16 4.4682 0.9180 1.5736 7 7 3.0521 2.2192 3.4057 8 6 4.0228 2.2598 4.5179 9 6 3.2495 3.4920 5.0043 10 6 2.0533 2.9480 4.2132 11 6 3.0270 3.5244 6.5132 12 7 2.3578 4.7715 6.8829 13 6 1.7291 4.8683 8.2026 14 6 2.7457 5.4015 9.2139 15 6 2.0988 5.5017 10.5714 16 1 1.0660 5.2135 10.6999 17 6 2.8259 5.9604 11.6494 18 7 4.0837 6.3108 11.4929 19 14 2.0242 6.0839 13.3321 20 1 2.2127 4.8063 14.0651 21 1 2.6500 7.1912 14.0984 22 1 0.5727 6.3523 13.1703 23 6 2.2978 5.8266 6.0637 24 8 1.7757 6.8430 6.4700 25 6 2.8445 5.8148 4.6652 26 8 3.7581 4.7264 4.5010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.4389 1.9576 -0.6605 31 1 3.0402 1.2446 -0.3515 32 1 1.1982 2.3029 1.6893 33 1 5.0435 2.4771 4.2032 34 1 3.9564 1.4051 5.1910 35 1 1.3998 2.2984 4.7954 36 1 1.5103 3.7117 3.6565 37 1 3.9884 3.4633 7.0232 38 1 2.4060 2.6782 6.8069 39 1 0.8779 5.5473 8.1505 40 1 1.3881 3.8816 8.5159 41 1 3.5969 4.7225 9.2660 42 1 3.0868 6.3882 8.9007 43 1 4.5951 6.6338 12.2513 44 1 2.0230 5.7066 3.9570 45 1 3.3656 6.7528 4.4732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274469793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:21 Heat of formation + Delta-G solvation = -76.735256 kcal Electronic energy + Delta-G solvation = -28124.577417 eV Core-core repulsion = 24076.636960 eV Total energy + Delta-G solvation = -4047.940457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.63345 -40.82533 -39.67186 -38.15912 -37.06168 -36.52007 -35.12119 -32.45578 -31.61553 -29.34615 -28.55529 -28.03861 -27.51929 -26.34766 -25.43933 -24.00522 -23.28244 -21.75897 -19.88332 -19.38891 -18.91015 -18.71967 -18.62358 -17.64566 -17.53302 -17.12339 -16.99635 -16.66012 -16.40705 -16.27247 -16.06209 -15.74275 -15.25666 -15.00211 -14.64464 -14.58141 -14.33739 -14.27397 -13.92955 -13.66445 -13.54052 -13.30244 -12.96115 -12.85166 -12.77391 -12.62847 -12.41580 -12.28321 -12.04576 -11.90297 -11.77812 -11.53295 -11.34529 -11.17284 -10.58016 -10.54520 -10.21983 -9.70350 -9.01805 -8.77906 -8.22205 -6.34240 0.28973 0.67237 1.31769 1.39699 1.42070 1.43987 1.52892 1.79724 2.04907 2.23470 2.40990 2.88021 2.93694 3.10526 3.12050 3.51231 3.59783 3.90547 3.95633 3.99251 4.14499 4.26251 4.28379 4.35082 4.40073 4.43626 4.49723 4.49974 4.53763 4.60693 4.64109 4.72958 4.84432 4.95750 5.14500 5.29151 5.45798 5.54020 5.58428 5.65122 5.82738 6.06037 6.16844 6.29408 6.40063 6.82245 7.04966 7.35654 8.89768 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.002194 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.308067 B =12756.381700 C =12815.032600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.406 6.406 3 C 0.270 3.730 4 N -0.684 5.684 5 C 0.625 3.375 6 S -0.741 6.741 7 N -0.592 5.592 8 C 0.148 3.852 9 C 0.065 3.935 10 C 0.073 3.927 11 C 0.100 3.900 12 N -0.597 5.597 13 C 0.130 3.870 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.263 1.263 23 C 0.471 3.529 24 O -0.589 6.589 25 C 0.063 3.937 26 O -0.348 6.348 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.412 0.588 33 H 0.100 0.900 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.099 0.901 41 H -0.001 1.001 42 H -0.029 1.029 43 H 0.263 0.737 44 H 0.123 0.877 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 -10.979 -22.203 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.320 6.320 3 C 0.109 3.891 4 N -0.325 5.325 5 C 0.264 3.736 6 S -0.613 6.613 7 N -0.301 5.301 8 C 0.026 3.974 9 C 0.024 3.976 10 C -0.052 4.052 11 C -0.023 4.023 12 N -0.328 5.328 13 C 0.008 3.992 14 C -0.016 4.016 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.187 1.187 23 C 0.260 3.740 24 O -0.470 6.470 25 C -0.016 4.016 26 O -0.266 6.266 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.150 0.850 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.018 0.982 42 H -0.010 1.010 43 H 0.071 0.929 44 H 0.141 0.859 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.836 -11.218 -22.680 27.147 hybrid contribution -1.084 1.316 1.663 2.381 sum -10.919 -9.902 -21.017 25.671 Atomic orbital electron populations 1.23076 0.79571 1.04048 1.01274 1.88191 1.21700 1.28853 1.93211 1.23298 1.02764 0.83442 0.79572 1.45610 1.14086 1.56483 1.16308 1.21264 0.90107 0.80524 0.81755 1.93795 1.26251 1.60183 1.81054 1.49054 1.20091 1.52312 1.08656 1.23573 0.95523 0.95032 0.83315 1.22902 0.96179 0.86463 0.92082 1.24540 0.93264 0.95937 0.91424 1.22140 1.00016 0.87258 0.92902 1.47706 1.54554 1.14329 1.16215 1.21530 0.95468 1.01960 0.80201 1.19186 0.94699 0.94035 0.93640 1.21559 0.98352 1.43674 0.94247 0.91378 1.26009 0.95375 0.94798 1.03785 1.70117 1.09810 1.45021 1.32437 0.85410 0.78808 0.78011 0.78593 1.19162 1.21362 1.18669 1.21517 0.79918 0.82912 0.89692 1.90764 1.47360 1.32173 1.76695 1.22848 0.95756 0.92296 0.90667 1.88189 1.41551 1.15813 1.81080 0.89219 0.93211 0.91604 0.86121 0.86100 0.74911 0.88154 0.83278 0.83544 0.86849 0.90376 0.85026 0.92276 0.88239 0.98234 1.01022 0.92850 0.85947 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.88 113.37 1.23 1.35 16 2 O -0.41 -6.30 10.93 -148.98 -1.63 -7.93 16 3 C 0.27 3.23 6.93 127.77 0.89 4.11 16 4 N -0.68 -7.64 5.53 -465.83 -2.58 -10.21 16 5 C 0.62 11.56 8.09 179.05 1.45 13.01 16 6 S -0.74 -22.40 28.34 -56.49 -1.60 -24.00 16 7 N -0.59 -8.06 3.61 -738.29 -2.67 -10.72 16 8 C 0.15 2.01 7.94 86.28 0.68 2.70 16 9 C 0.07 0.93 1.16 -10.65 -0.01 0.92 16 10 C 0.07 0.55 7.55 86.28 0.65 1.20 16 11 C 0.10 1.81 5.88 86.27 0.51 2.32 16 12 N -0.60 -17.19 2.84 -825.55 -2.34 -19.53 16 13 C 0.13 4.82 5.20 86.38 0.45 5.27 16 14 C 0.02 1.14 5.29 29.85 0.16 1.30 16 15 C -0.54 -29.66 9.11 25.60 0.23 -29.43 16 16 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 17 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 18 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 19 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.47 14.46 7.57 87.65 0.66 15.12 16 24 O -0.59 -24.58 16.33 -3.03 -0.05 -24.63 16 25 C 0.06 1.25 6.65 71.07 0.47 1.73 16 26 O -0.35 -6.91 10.66 -148.98 -1.59 -8.50 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.07 0.21 8.09 -2.39 -0.02 0.19 16 30 H 0.12 0.46 7.93 -2.39 -0.02 0.44 16 31 H 0.12 2.20 6.36 -2.39 -0.02 2.18 16 32 H 0.41 1.76 8.44 -92.71 -0.78 0.98 16 33 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.15 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.15 0.33 7.91 -2.39 -0.02 0.31 16 36 H 0.11 0.50 7.02 -2.39 -0.02 0.48 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.13 1.41 7.77 -2.39 -0.02 1.39 16 39 H 0.06 2.41 7.29 -2.39 -0.02 2.39 16 40 H 0.10 3.01 7.96 -2.39 -0.02 2.99 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 43 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 44 H 0.12 1.50 7.16 -2.39 -0.02 1.48 16 45 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -90.92 387.18 -2.07 -92.99 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 0.23 Total: 3.66 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 7.84 Total: 19.96 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -7.30 Total: -96.97 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -3.27 Total: -41.05 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -22.40 SS G_CDS: -1.60 Total: -24.00 kcal Total: -90.92 -2.07 -92.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274469793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.256 kcal (2) G-P(sol) polarization free energy of solvation -90.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds