Wall clock time and date at job start Wed Apr 1 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99882 * 2 1 4 4 C 1.53002 * 109.47095 * 269.99669 * 3 2 1 5 5 C 1.52994 * 109.47509 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47380 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99845 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00635 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99849 * 180.02562 * 7 6 5 10 10 S 1.81007 * 109.47073 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99800 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00326 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00233 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99428 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00458 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47058 * 90.00126 * 15 13 11 17 17 H 1.48501 * 109.47461 * 210.00237 * 15 13 11 18 18 H 1.48504 * 109.47148 * 329.99914 * 15 13 11 19 19 C 1.34774 * 119.99888 * 179.97438 * 2 1 3 20 20 O 1.21284 * 120.00173 * 180.02562 * 19 2 1 21 21 C 1.50701 * 120.00151 * 0.02562 * 19 2 1 22 22 H 1.08995 * 110.43549 * 57.46008 * 21 19 2 23 23 C 1.54631 * 110.48626 * 180.02562 * 21 19 2 24 24 C 1.54480 * 101.76472 * 143.47554 * 23 21 19 25 25 N 1.46768 * 105.55098 * 334.54015 * 24 23 21 26 26 C 1.34621 * 111.17925 * 17.05474 * 25 24 23 27 27 O 1.21280 * 124.90469 * 179.60750 * 26 25 24 28 28 H 1.08992 * 109.47313 * 270.00094 * 1 2 3 29 29 H 1.09000 * 109.46827 * 30.00680 * 1 2 3 30 30 H 1.08997 * 109.46949 * 150.00377 * 1 2 3 31 31 H 1.08998 * 109.47398 * 29.99615 * 3 2 1 32 32 H 1.09005 * 109.47295 * 150.00169 * 3 2 1 33 33 H 1.09004 * 109.47289 * 300.00007 * 4 3 2 34 34 H 1.09003 * 109.47143 * 60.00002 * 4 3 2 35 35 H 1.09001 * 109.47621 * 300.00424 * 5 4 3 36 36 H 1.09003 * 109.46865 * 59.99894 * 5 4 3 37 37 H 0.96992 * 120.00015 * 359.97438 * 6 5 4 38 38 H 1.09004 * 109.47420 * 299.99898 * 9 7 6 39 39 H 1.08996 * 109.47120 * 60.00378 * 9 7 6 40 40 H 0.97002 * 119.99585 * 179.97438 * 14 13 11 41 41 H 1.08995 * 110.97041 * 25.35511 * 23 21 19 42 42 H 1.09001 * 110.96622 * 261.59228 * 23 21 19 43 43 H 1.09002 * 110.24648 * 93.58391 * 24 23 21 44 44 H 1.09002 * 110.24453 * 215.49747 * 24 23 21 45 45 H 0.96999 * 124.35248 * 197.08403 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4617 3.4582 -2.8239 7 6 4.1243 4.6057 -3.0702 8 8 4.5184 5.2883 -2.1484 9 6 4.3755 5.0406 -4.4910 10 16 5.2800 6.6085 -4.4910 11 6 5.4338 6.8729 -6.2263 12 1 5.0205 6.1562 -6.9205 13 6 6.0854 8.0027 -6.7011 14 7 6.5888 8.8764 -5.8550 15 14 6.2479 8.2834 -8.5407 16 1 5.0780 9.0571 -9.0286 17 1 7.4937 9.0427 -8.8175 18 1 6.3011 6.9736 -9.2385 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0010 21 6 1.3854 -2.4723 0.0005 22 1 0.7197 -2.5274 -0.8607 23 6 2.3693 -3.6652 0.0018 24 6 1.6314 -4.6811 0.9018 25 7 0.7654 -3.8783 1.7734 26 6 0.6054 -2.6334 1.2867 27 8 -0.0661 -1.7666 1.8051 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1500 1.1384 0.5138 33 1 3.0417 0.9507 -1.9563 34 1 1.5001 1.8407 -1.9564 35 1 2.6275 3.7952 -0.9289 36 1 4.1693 2.9058 -0.9286 37 1 3.1475 2.9118 -3.5611 38 1 4.9646 4.2809 -5.0048 39 1 3.4232 5.1710 -5.0048 40 1 7.0444 9.6659 -6.1868 41 1 3.3266 -3.3808 0.4383 42 1 2.5034 -4.0613 -1.0048 43 1 1.0311 -5.3577 0.2935 44 1 2.3475 -5.2461 1.4985 45 1 0.3618 -4.2032 2.5934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283495467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:18 Heat of formation + Delta-G solvation = -103.639433 kcal Electronic energy + Delta-G solvation = -26562.378025 eV Core-core repulsion = 22513.270915 eV Total energy + Delta-G solvation = -4049.107109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55473 -39.52419 -39.05464 -37.21868 -36.29228 -34.91105 -32.60399 -32.40600 -31.52292 -29.30985 -28.52248 -27.16153 -25.62056 -25.26662 -22.84218 -22.22557 -21.58729 -20.29367 -19.19870 -18.10176 -17.91484 -17.80838 -17.15015 -16.56683 -16.23384 -15.77827 -15.55318 -15.42098 -15.00747 -14.78417 -14.47883 -14.41624 -14.00014 -13.88403 -13.79424 -13.51527 -13.11846 -13.05313 -12.86007 -12.64763 -12.55883 -12.36609 -12.31903 -11.80232 -11.76603 -11.72188 -11.05693 -11.02883 -11.00215 -10.74609 -10.45573 -10.25658 -9.79576 -9.76927 -9.40403 -9.04977 -8.95515 -8.84182 -8.20764 -6.47397 -6.19511 -3.89866 1.76967 2.14892 2.53550 2.77594 3.08803 3.14542 3.23845 3.29727 3.34613 3.63327 3.67570 3.77922 4.06449 4.22508 4.31780 4.38907 4.64634 4.69343 4.74882 4.85793 4.88787 4.90975 5.15528 5.19015 5.21212 5.23810 5.25296 5.37834 5.47693 5.59494 5.62980 5.69922 5.86174 5.94439 5.98594 6.06585 6.13889 6.16945 6.36695 6.65587 6.93153 7.57532 7.61612 7.69822 7.75120 8.37335 8.65751 9.25695 10.87943 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.001520 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.269341 B =18412.279413 C =18754.415946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.118 3.882 4 C -0.145 4.145 5 C 0.124 3.876 6 N -0.739 5.739 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.530 3.470 20 O -0.529 6.529 21 C -0.150 4.150 22 H 0.135 0.865 23 C -0.120 4.120 24 C 0.098 3.902 25 N -0.728 5.728 26 C 0.531 3.469 27 O -0.516 6.516 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.896 -31.163 12.773 37.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.334 5.334 3 C -0.005 4.005 4 C -0.183 4.183 5 C 0.000 4.000 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.315 3.685 20 O -0.406 6.406 21 C -0.175 4.175 22 H 0.153 0.847 23 C -0.158 4.158 24 C -0.026 4.026 25 N -0.384 5.384 26 C 0.315 3.685 27 O -0.391 6.391 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.804 -29.330 14.532 35.925 hybrid contribution -0.852 -1.152 -2.402 2.797 sum -15.656 -30.481 12.130 36.351 Atomic orbital electron populations 1.22145 0.78379 1.02000 1.04138 1.47723 1.07681 1.05636 1.72381 1.21408 0.98270 0.84260 0.96550 1.22128 1.01078 0.97296 0.97847 1.21136 1.00153 0.94717 0.84030 1.45971 1.60350 1.24941 1.08077 1.20305 0.76738 0.79934 0.91316 1.90704 1.49309 1.53097 1.46097 1.23531 1.05373 1.06368 0.95120 1.85403 1.70500 1.17729 1.09751 1.22876 1.42979 1.10983 0.91562 0.90935 1.24994 0.94669 0.94933 0.98999 1.70024 1.34956 1.10947 1.34351 0.86164 0.77803 0.78389 0.83112 1.20287 1.20750 1.19719 1.19745 0.87555 0.84591 0.76573 1.90738 1.13353 1.86835 1.49650 1.22142 0.99782 0.95792 0.99774 0.84731 1.22651 0.99044 0.92140 1.01944 1.22180 0.93390 0.94036 0.93031 1.46209 1.51799 1.13250 1.27179 1.20396 0.80374 0.82247 0.85455 1.90748 1.41112 1.43318 1.63967 0.89432 0.91561 0.91894 0.89742 0.89297 0.90791 0.91103 0.91480 0.91380 0.76887 0.89226 0.89252 0.92197 0.87896 0.88380 0.90531 0.89623 0.74596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 8.75 59.85 0.52 1.03 16 2 N -0.60 -5.18 2.86 -181.57 -0.52 -5.70 16 3 C 0.12 1.05 5.41 -4.04 -0.02 1.03 16 4 C -0.14 -1.29 5.65 -26.73 -0.15 -1.44 16 5 C 0.12 1.49 5.67 -4.04 -0.02 1.47 16 6 N -0.74 -10.23 5.56 -60.29 -0.33 -10.56 16 7 C 0.53 10.23 7.85 -10.99 -0.09 10.14 16 8 O -0.52 -12.13 15.86 5.55 0.09 -12.05 16 9 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 15 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.53 5.00 7.04 -10.99 -0.08 4.92 16 20 O -0.53 -6.71 15.07 5.55 0.08 -6.62 16 21 C -0.15 -0.88 2.41 -91.78 -0.22 -1.10 16 22 H 0.14 0.49 7.30 -51.93 -0.38 0.11 16 23 C -0.12 -0.48 6.48 -25.10 -0.16 -0.64 16 24 C 0.10 0.19 7.78 -3.12 -0.02 0.17 16 25 N -0.73 -2.97 6.26 -59.15 -0.37 -3.34 16 26 C 0.53 3.70 7.59 -10.77 -0.08 3.62 16 27 O -0.52 -5.09 13.90 5.56 0.08 -5.01 16 28 H 0.09 0.72 5.98 -51.93 -0.31 0.41 16 29 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 30 H 0.06 0.33 6.19 -51.93 -0.32 0.01 16 31 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.09 0.93 7.42 -51.93 -0.39 0.54 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.40 4.31 8.47 -40.82 -0.35 3.96 16 38 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.10 0.63 7.00 -51.93 -0.36 0.27 16 42 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 44 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 45 H 0.41 1.12 8.96 -40.82 -0.37 0.76 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -39.07 386.82 -8.21 -47.28 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.66 Total: 0.06 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 0.09 Total: 3.11 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.49 Total: -45.29 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.25 Total: -23.68 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.07 -8.21 -47.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.357 kcal (2) G-P(sol) polarization free energy of solvation -39.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds