Wall clock time and date at job start Wed Apr 1 2020 01:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99882 * 2 1 4 4 C 1.53002 * 109.47095 * 269.99669 * 3 2 1 5 5 C 1.52994 * 109.47509 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47380 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99845 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00635 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99849 * 180.02562 * 7 6 5 10 10 S 1.81007 * 109.47073 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99800 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00326 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00233 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99428 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00458 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47058 * 90.00126 * 15 13 11 17 17 H 1.48501 * 109.47461 * 210.00237 * 15 13 11 18 18 H 1.48504 * 109.47148 * 329.99914 * 15 13 11 19 19 C 1.34774 * 119.99888 * 179.97438 * 2 1 3 20 20 O 1.21284 * 120.00173 * 180.02562 * 19 2 1 21 21 C 1.50701 * 120.00151 * 0.02562 * 19 2 1 22 22 H 1.08995 * 110.43549 * 57.46008 * 21 19 2 23 23 C 1.54631 * 110.48626 * 180.02562 * 21 19 2 24 24 C 1.54480 * 101.76472 * 143.47554 * 23 21 19 25 25 N 1.46768 * 105.55098 * 334.54015 * 24 23 21 26 26 C 1.34621 * 111.17925 * 17.05474 * 25 24 23 27 27 O 1.21280 * 124.90469 * 179.60750 * 26 25 24 28 28 H 1.08992 * 109.47313 * 270.00094 * 1 2 3 29 29 H 1.09000 * 109.46827 * 30.00680 * 1 2 3 30 30 H 1.08997 * 109.46949 * 150.00377 * 1 2 3 31 31 H 1.08998 * 109.47398 * 29.99615 * 3 2 1 32 32 H 1.09005 * 109.47295 * 150.00169 * 3 2 1 33 33 H 1.09004 * 109.47289 * 300.00007 * 4 3 2 34 34 H 1.09003 * 109.47143 * 60.00002 * 4 3 2 35 35 H 1.09001 * 109.47621 * 300.00424 * 5 4 3 36 36 H 1.09003 * 109.46865 * 59.99894 * 5 4 3 37 37 H 0.96992 * 120.00015 * 359.97438 * 6 5 4 38 38 H 1.09004 * 109.47420 * 299.99898 * 9 7 6 39 39 H 1.08996 * 109.47120 * 60.00378 * 9 7 6 40 40 H 0.97002 * 119.99585 * 179.97438 * 14 13 11 41 41 H 1.08995 * 110.97041 * 25.35511 * 23 21 19 42 42 H 1.09001 * 110.96622 * 261.59228 * 23 21 19 43 43 H 1.09002 * 110.24648 * 93.58391 * 24 23 21 44 44 H 1.09002 * 110.24453 * 215.49747 * 24 23 21 45 45 H 0.96999 * 124.35248 * 197.08403 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4426 6 7 3.4617 3.4582 -2.8239 7 6 4.1243 4.6057 -3.0702 8 8 4.5184 5.2883 -2.1484 9 6 4.3755 5.0406 -4.4910 10 16 5.2800 6.6085 -4.4910 11 6 5.4338 6.8729 -6.2263 12 1 5.0205 6.1562 -6.9205 13 6 6.0854 8.0027 -6.7011 14 7 6.5888 8.8764 -5.8550 15 14 6.2479 8.2834 -8.5407 16 1 5.0780 9.0571 -9.0286 17 1 7.4937 9.0427 -8.8175 18 1 6.3011 6.9736 -9.2385 19 6 2.1389 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0010 21 6 1.3854 -2.4723 0.0005 22 1 0.7197 -2.5274 -0.8607 23 6 2.3693 -3.6652 0.0018 24 6 1.6314 -4.6811 0.9018 25 7 0.7654 -3.8783 1.7734 26 6 0.6054 -2.6334 1.2867 27 8 -0.0661 -1.7666 1.8051 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1500 1.1384 0.5138 33 1 3.0417 0.9507 -1.9563 34 1 1.5001 1.8407 -1.9564 35 1 2.6275 3.7952 -0.9289 36 1 4.1693 2.9058 -0.9286 37 1 3.1475 2.9118 -3.5611 38 1 4.9646 4.2809 -5.0048 39 1 3.4232 5.1710 -5.0048 40 1 7.0444 9.6659 -6.1868 41 1 3.3266 -3.3808 0.4383 42 1 2.5034 -4.0613 -1.0048 43 1 1.0311 -5.3577 0.2935 44 1 2.3475 -5.2461 1.4985 45 1 0.3618 -4.2032 2.5934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283495467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:17 Heat of formation + Delta-G solvation = -135.116435 kcal Electronic energy + Delta-G solvation = -26563.742970 eV Core-core repulsion = 22513.270915 eV Total energy + Delta-G solvation = -4050.472054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.08016 -40.64360 -40.05001 -37.78820 -37.07006 -35.99858 -34.58252 -33.41725 -32.27592 -30.66289 -28.98125 -27.91706 -27.61638 -26.21909 -23.48618 -22.70423 -22.28839 -21.68404 -19.84829 -19.79091 -18.57985 -18.42064 -17.84491 -17.71799 -17.40193 -16.87861 -16.85143 -16.69696 -16.10205 -15.80522 -15.67824 -15.41490 -14.87929 -14.71150 -14.55619 -14.38589 -14.34107 -14.10353 -13.88317 -13.55941 -13.28441 -13.17343 -13.15889 -12.97710 -12.88158 -12.73596 -12.65632 -12.58063 -12.09374 -11.85752 -11.73045 -11.13951 -11.09342 -11.01959 -10.88277 -10.27734 -10.14095 -10.09173 -9.66032 -8.67003 -8.34335 -6.12824 1.21160 1.26570 1.43094 1.46276 1.53381 1.58649 1.60204 1.93891 2.27180 2.33869 2.41707 2.99800 3.24053 3.24902 3.32353 3.65577 3.88001 3.91342 3.97644 4.01346 4.08675 4.16308 4.29232 4.35427 4.41506 4.48805 4.50646 4.55768 4.68826 4.78338 4.80915 4.98955 5.02567 5.09294 5.11934 5.17494 5.40929 5.42168 5.47811 5.74268 5.99462 6.20124 6.27738 6.49391 7.01162 7.06776 7.16221 7.23266 8.74989 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.001520 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.269341 B =18412.279413 C =18754.415946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.602 5.602 3 C 0.116 3.884 4 C -0.124 4.124 5 C 0.124 3.876 6 N -0.712 5.712 7 C 0.532 3.468 8 O -0.567 6.567 9 C -0.129 4.129 10 S -0.154 6.154 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.258 1.258 19 C 0.520 3.480 20 O -0.571 6.571 21 C -0.146 4.146 22 H 0.162 0.838 23 C -0.119 4.119 24 C 0.101 3.899 25 N -0.720 5.720 26 C 0.522 3.478 27 O -0.553 6.553 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.417 0.583 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.779 -33.868 10.794 39.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.333 5.333 3 C -0.007 4.007 4 C -0.163 4.163 5 C 0.000 4.000 6 N -0.366 5.366 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.280 4.280 10 S 0.073 5.927 11 C -0.695 4.695 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.182 1.182 19 C 0.307 3.693 20 O -0.450 6.450 21 C -0.170 4.170 22 H 0.180 0.820 23 C -0.157 4.157 24 C -0.023 4.023 25 N -0.376 5.376 26 C 0.307 3.693 27 O -0.431 6.431 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.254 0.746 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -16.736 -32.127 12.551 38.338 hybrid contribution -0.313 -0.439 -1.678 1.762 sum -17.049 -32.566 10.873 38.333 Atomic orbital electron populations 1.22203 0.76943 1.03602 1.03664 1.47844 1.08522 1.05294 1.71647 1.21358 0.97799 0.85120 0.96447 1.21940 1.01410 0.94957 0.97998 1.21238 0.99899 0.96348 0.82514 1.45717 1.58100 1.23064 1.09757 1.20104 0.77028 0.80953 0.90130 1.90694 1.51757 1.55046 1.47078 1.23371 1.05462 1.02428 0.96759 1.85602 1.72653 1.23406 1.10989 1.23217 1.43193 1.11579 0.91507 0.89821 1.26149 0.93925 0.94420 1.04697 1.70193 1.35922 1.11653 1.37033 0.84931 0.78017 0.78858 0.76024 1.19223 1.20322 1.18186 1.20403 0.87351 0.85872 0.75646 1.90716 1.15194 1.87562 1.51549 1.22200 1.00146 0.94340 1.00326 0.82047 1.22683 0.97584 0.91930 1.03473 1.22371 0.93576 0.93435 0.92886 1.46274 1.51235 1.12637 1.27406 1.20629 0.80224 0.82706 0.85777 1.90735 1.42838 1.44554 1.64996 0.91011 0.89916 0.90276 0.88319 0.91507 0.91389 0.88818 0.91430 0.93012 0.74640 0.87255 0.86943 0.91993 0.90507 0.86244 0.87740 0.88153 0.73830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 8.75 127.77 1.12 2.03 16 2 N -0.60 -9.80 2.86 -846.76 -2.43 -12.23 16 3 C 0.12 2.00 5.41 86.38 0.47 2.46 16 4 C -0.12 -2.01 5.65 30.59 0.17 -1.83 16 5 C 0.12 2.87 5.67 86.38 0.49 3.36 16 6 N -0.71 -18.49 5.56 -463.06 -2.57 -21.06 16 7 C 0.53 20.20 7.85 87.66 0.69 20.89 16 8 O -0.57 -27.17 15.86 -3.05 -0.05 -27.22 16 9 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 10 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 11 C -0.55 -31.55 9.50 67.95 0.65 -30.91 16 12 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 13 C 0.01 0.73 5.49 84.86 0.47 1.20 16 14 N -0.91 -56.55 13.22 21.65 0.29 -56.27 16 15 Si 1.00 43.84 29.55 68.60 2.03 45.86 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 19 C 0.52 9.56 7.04 87.66 0.62 10.18 16 20 O -0.57 -14.79 15.07 -3.04 -0.05 -14.83 16 21 C -0.15 -1.48 2.41 -11.54 -0.03 -1.51 16 22 H 0.16 0.69 7.30 -2.39 -0.02 0.67 16 23 C -0.12 -0.74 6.48 31.65 0.21 -0.54 16 24 C 0.10 0.13 7.78 86.83 0.68 0.80 16 25 N -0.72 -4.61 6.26 -459.52 -2.87 -7.49 16 26 C 0.52 6.69 7.59 87.87 0.67 7.36 16 27 O -0.55 -10.70 13.90 -3.03 -0.04 -10.74 16 28 H 0.07 1.13 5.98 -2.39 -0.01 1.12 16 29 H 0.08 0.68 8.07 -2.39 -0.02 0.67 16 30 H 0.08 0.66 6.19 -2.39 -0.01 0.65 16 31 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 32 H 0.07 1.46 7.42 -2.38 -0.02 1.44 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.42 7.77 8.47 -92.71 -0.79 6.99 16 38 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 39 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.08 0.93 7.00 -2.39 -0.02 0.91 16 42 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.42 1.62 8.96 -92.71 -0.83 0.79 16 Total: -1.00 -89.01 386.82 -0.82 -89.83 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.58 Total: 15.24 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.62 Total: 8.74 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -7.59 Total: -97.05 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.14 Total: -52.79 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -89.01 -0.82 -89.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.287 kcal (2) G-P(sol) polarization free energy of solvation -89.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds