Wall clock time and date at job start Wed Apr 1 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99543 * 2 1 4 4 C 1.53003 * 109.47047 * 269.99640 * 3 2 1 5 5 N 1.46508 * 109.46952 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99743 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99723 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46829 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99804 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00331 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00028 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00321 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99913 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47238 * 89.99762 * 14 12 10 16 16 H 1.48498 * 109.47385 * 209.99903 * 14 12 10 17 17 H 1.48497 * 109.47414 * 329.99981 * 14 12 10 18 18 C 1.34776 * 120.00557 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00188 * 180.02562 * 18 2 1 20 20 C 1.50699 * 119.99684 * 359.97438 * 18 2 1 21 21 H 1.09000 * 112.91072 * 311.25552 * 20 18 2 22 22 C 1.53785 * 113.61387 * 82.50327 * 20 18 2 23 23 C 1.53779 * 87.08100 * 139.97777 * 22 20 18 24 24 C 1.53779 * 87.08382 * 334.57002 * 23 22 20 25 25 H 1.09001 * 113.61347 * 270.79776 * 24 23 22 26 26 C 1.50696 * 113.61590 * 139.97654 * 24 23 22 27 27 N 1.34777 * 120.00076 * 79.50850 * 26 24 23 28 28 O 1.21281 * 120.00074 * 259.50352 * 26 24 23 29 29 H 1.08997 * 109.47282 * 269.99848 * 1 2 3 30 30 H 1.08997 * 109.47217 * 30.00343 * 1 2 3 31 31 H 1.09001 * 109.46872 * 149.99725 * 1 2 3 32 32 H 1.08998 * 109.47533 * 29.99808 * 3 2 1 33 33 H 1.09002 * 109.47465 * 150.00071 * 3 2 1 34 34 H 1.08997 * 109.47137 * 299.99884 * 4 3 2 35 35 H 1.09000 * 109.47253 * 60.00341 * 4 3 2 36 36 H 0.96991 * 120.00154 * 359.97438 * 5 4 3 37 37 H 1.08998 * 109.47319 * 299.99554 * 8 6 5 38 38 H 1.08994 * 109.47449 * 59.99886 * 8 6 5 39 39 H 0.96999 * 119.99707 * 180.02562 * 13 12 10 40 40 H 1.08997 * 113.61173 * 25.43133 * 22 20 18 41 41 H 1.09003 * 113.69291 * 254.54202 * 22 20 18 42 42 H 1.08994 * 113.61829 * 220.01814 * 23 22 20 43 43 H 1.09001 * 113.61113 * 89.11743 * 23 22 20 44 44 H 0.97001 * 120.00485 * 180.02562 * 27 26 24 45 45 H 0.97005 * 119.99790 * 359.72082 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1854 2.9790 -1.4425 6 6 3.5220 3.5627 -2.6098 7 8 3.2185 3.0377 -3.6601 8 6 4.2764 4.8673 -2.6097 9 16 4.5780 5.3898 -4.3162 10 6 5.4475 6.8946 -4.0263 11 1 5.6375 7.2223 -3.0149 12 6 5.8892 7.6585 -5.0977 13 7 6.5392 8.7824 -4.8812 14 14 5.5613 7.0914 -6.8471 15 1 4.2623 7.6420 -7.3107 16 1 6.6488 7.5736 -7.7359 17 1 5.5119 5.6077 -6.8856 18 6 2.1390 -1.1671 0.0005 19 8 3.3518 -1.1670 0.0010 20 6 1.3855 -2.4722 0.0017 21 1 0.6003 -2.5082 0.7568 22 6 0.9178 -2.9148 -1.3949 23 6 1.3042 -4.3456 -0.9847 24 6 2.2979 -3.7102 0.0021 25 1 3.2833 -3.5283 -0.4268 26 6 2.3599 -4.4138 1.3334 27 7 3.0741 -5.5495 1.4627 28 8 1.7673 -3.9580 2.2883 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1386 0.5138 34 1 3.0416 0.9508 -1.9563 35 1 1.5000 1.8407 -1.9564 36 1 3.4278 3.3990 -0.6025 37 1 3.6882 5.6272 -2.0953 38 1 5.2290 4.7361 -2.0966 39 1 6.8476 9.3163 -5.6300 40 1 1.5255 -2.5140 -2.2061 41 1 -0.1512 -2.7818 -1.5613 42 1 1.7835 -4.9139 -1.7817 43 1 0.4968 -4.8937 -0.4992 44 1 3.1137 -6.0026 2.3195 45 1 3.5448 -5.9161 0.6979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284497489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:02 Heat of formation + Delta-G solvation = -92.527271 kcal Electronic energy + Delta-G solvation = -26834.605593 eV Core-core repulsion = 22785.980344 eV Total energy + Delta-G solvation = -4048.625250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37204 -39.73159 -39.14350 -37.57123 -36.23965 -34.48976 -34.06471 -32.42900 -30.80652 -28.83831 -27.49662 -27.34021 -26.31642 -25.58532 -23.20562 -21.94420 -20.72955 -20.21732 -19.35716 -18.35651 -17.87445 -17.60160 -16.94659 -16.74333 -16.39415 -16.02596 -15.50176 -15.39841 -15.03018 -15.00084 -14.87174 -14.50204 -14.01000 -13.71638 -13.52527 -13.44834 -13.26750 -13.18925 -12.79274 -12.65542 -12.58045 -12.25916 -12.19435 -12.05348 -11.56134 -11.42651 -11.25962 -11.12470 -11.00048 -10.61035 -10.27081 -10.15240 -10.04232 -9.85215 -9.56147 -9.09108 -9.02390 -8.96768 -8.49247 -6.90866 -6.27985 -3.99675 2.17385 2.25025 2.40906 2.84189 2.98079 3.08921 3.33166 3.40183 3.51497 3.71455 3.76959 3.95443 4.08375 4.13107 4.34055 4.42010 4.63035 4.69136 4.70941 4.77283 4.79222 5.02363 5.08559 5.09885 5.11028 5.17070 5.19069 5.26224 5.33622 5.33751 5.38899 5.62111 5.73313 5.78764 5.79969 6.02360 6.08705 6.30986 6.50557 6.85254 6.95120 7.58815 7.80587 7.81584 7.95098 8.42737 8.48690 9.18183 10.81213 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.001749 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.870260 B =16005.320123 C =16158.850495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.612 5.612 3 C 0.104 3.896 4 C 0.109 3.891 5 N -0.735 5.735 6 C 0.532 3.468 7 O -0.519 6.519 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.527 3.473 19 O -0.533 6.533 20 C -0.114 4.114 21 H 0.127 0.873 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.120 4.120 25 H 0.130 0.870 26 C 0.530 3.470 27 N -0.854 5.854 28 O -0.544 6.544 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.401 0.599 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.189 -29.013 13.215 34.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.345 5.345 3 C -0.019 4.019 4 C -0.017 4.017 5 N -0.390 5.390 6 C 0.318 3.682 7 O -0.394 6.394 8 C -0.274 4.274 9 S 0.084 5.916 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.315 3.685 19 O -0.409 6.409 20 C -0.135 4.135 21 H 0.145 0.855 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.141 4.141 25 H 0.148 0.852 26 C 0.315 3.685 27 N -0.416 5.416 28 O -0.420 6.420 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.231 0.769 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -14.404 -29.288 11.891 34.737 hybrid contribution 0.711 0.570 0.946 1.313 sum -13.693 -28.718 12.837 34.307 Atomic orbital electron populations 1.21912 0.78854 1.03776 1.02290 1.47654 1.07278 1.05537 1.74037 1.21600 0.98729 0.85112 0.96496 1.21568 0.97103 0.86223 0.96757 1.45801 1.60036 1.24143 1.09010 1.20275 0.78754 0.85960 0.83213 1.90698 1.53239 1.64403 1.31025 1.23275 1.02736 0.96314 1.05105 1.84785 1.74520 1.29275 1.03007 1.22322 1.41225 1.05665 0.97670 0.89361 1.24716 0.93415 0.93892 0.99307 1.69941 1.36398 1.12943 1.32401 0.86731 0.78868 0.82112 0.84115 1.19218 1.19946 1.15926 1.20461 0.87833 0.85032 0.75199 1.90715 1.13864 1.87166 1.49107 1.22684 0.99373 0.90788 1.00670 0.85531 1.22866 1.02549 0.95735 0.95028 1.22821 0.98226 0.96920 0.98037 1.22722 1.01761 0.95661 0.93969 0.85234 1.20426 0.77513 0.80388 0.90165 1.43842 1.53889 1.27573 1.16342 1.90738 1.45005 1.65555 1.40733 0.92119 0.90492 0.90599 0.89634 0.89041 0.91283 0.91535 0.76589 0.88420 0.88359 0.91953 0.88849 0.89690 0.89690 0.89216 0.76854 0.76886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.10 59.85 0.60 0.99 16 2 N -0.61 -5.27 2.87 -181.57 -0.52 -5.79 16 3 C 0.10 0.94 5.52 -4.04 -0.02 0.92 16 4 C 0.11 1.28 6.00 -4.04 -0.02 1.26 16 5 N -0.73 -9.55 5.56 -60.29 -0.33 -9.88 16 6 C 0.53 9.63 7.85 -10.99 -0.09 9.54 16 7 O -0.52 -11.44 15.86 5.56 0.09 -11.35 16 8 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 11 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 12 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 13 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 14 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 18 C 0.53 5.51 7.20 -10.99 -0.08 5.43 16 19 O -0.53 -7.56 15.48 5.56 0.09 -7.47 16 20 C -0.11 -0.85 2.09 -90.96 -0.19 -1.04 16 21 H 0.13 0.93 7.18 -51.93 -0.37 0.56 16 22 C -0.12 -0.62 6.91 -25.92 -0.18 -0.80 16 23 C -0.12 -0.50 7.63 -25.92 -0.20 -0.69 16 24 C -0.12 -0.82 3.47 -90.96 -0.32 -1.13 16 25 H 0.13 0.97 7.44 -51.93 -0.39 0.58 16 26 C 0.53 4.35 7.62 -10.99 -0.08 4.27 16 27 N -0.85 -3.77 8.87 31.22 0.28 -3.49 16 28 O -0.54 -6.70 16.76 5.56 0.09 -6.60 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.34 8.07 -51.93 -0.42 -0.07 16 31 H 0.08 0.29 5.79 -51.93 -0.30 -0.01 16 32 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 37 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.08 0.28 7.68 -51.93 -0.40 -0.12 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 0.32 8.09 -51.93 -0.42 -0.10 16 44 H 0.40 1.45 8.93 -40.82 -0.36 1.09 16 45 H 0.40 0.65 8.83 -40.82 -0.36 0.29 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -40.25 391.97 -7.18 -47.43 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.71 Total: 1.15 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.14 Total: 4.46 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.20 Total: -45.07 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.27 Total: -25.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.25 -7.18 -47.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284497489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.098 kcal (2) G-P(sol) polarization free energy of solvation -40.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds