Wall clock time and date at job start Wed Apr 1 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99543 * 2 1 4 4 C 1.53003 * 109.47047 * 269.99640 * 3 2 1 5 5 N 1.46508 * 109.46952 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99743 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99723 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46829 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99804 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00331 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00028 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00321 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99913 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47238 * 89.99762 * 14 12 10 16 16 H 1.48498 * 109.47385 * 209.99903 * 14 12 10 17 17 H 1.48497 * 109.47414 * 329.99981 * 14 12 10 18 18 C 1.34776 * 120.00557 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00188 * 180.02562 * 18 2 1 20 20 C 1.50699 * 119.99684 * 359.97438 * 18 2 1 21 21 H 1.09000 * 112.91072 * 311.25552 * 20 18 2 22 22 C 1.53785 * 113.61387 * 82.50327 * 20 18 2 23 23 C 1.53779 * 87.08100 * 139.97777 * 22 20 18 24 24 C 1.53779 * 87.08382 * 334.57002 * 23 22 20 25 25 H 1.09001 * 113.61347 * 270.79776 * 24 23 22 26 26 C 1.50696 * 113.61590 * 139.97654 * 24 23 22 27 27 N 1.34777 * 120.00076 * 79.50850 * 26 24 23 28 28 O 1.21281 * 120.00074 * 259.50352 * 26 24 23 29 29 H 1.08997 * 109.47282 * 269.99848 * 1 2 3 30 30 H 1.08997 * 109.47217 * 30.00343 * 1 2 3 31 31 H 1.09001 * 109.46872 * 149.99725 * 1 2 3 32 32 H 1.08998 * 109.47533 * 29.99808 * 3 2 1 33 33 H 1.09002 * 109.47465 * 150.00071 * 3 2 1 34 34 H 1.08997 * 109.47137 * 299.99884 * 4 3 2 35 35 H 1.09000 * 109.47253 * 60.00341 * 4 3 2 36 36 H 0.96991 * 120.00154 * 359.97438 * 5 4 3 37 37 H 1.08998 * 109.47319 * 299.99554 * 8 6 5 38 38 H 1.08994 * 109.47449 * 59.99886 * 8 6 5 39 39 H 0.96999 * 119.99707 * 180.02562 * 13 12 10 40 40 H 1.08997 * 113.61173 * 25.43133 * 22 20 18 41 41 H 1.09003 * 113.69291 * 254.54202 * 22 20 18 42 42 H 1.08994 * 113.61829 * 220.01814 * 23 22 20 43 43 H 1.09001 * 113.61113 * 89.11743 * 23 22 20 44 44 H 0.97001 * 120.00485 * 180.02562 * 27 26 24 45 45 H 0.97005 * 119.99790 * 359.72082 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1854 2.9790 -1.4425 6 6 3.5220 3.5627 -2.6098 7 8 3.2185 3.0377 -3.6601 8 6 4.2764 4.8673 -2.6097 9 16 4.5780 5.3898 -4.3162 10 6 5.4475 6.8946 -4.0263 11 1 5.6375 7.2223 -3.0149 12 6 5.8892 7.6585 -5.0977 13 7 6.5392 8.7824 -4.8812 14 14 5.5613 7.0914 -6.8471 15 1 4.2623 7.6420 -7.3107 16 1 6.6488 7.5736 -7.7359 17 1 5.5119 5.6077 -6.8856 18 6 2.1390 -1.1671 0.0005 19 8 3.3518 -1.1670 0.0010 20 6 1.3855 -2.4722 0.0017 21 1 0.6003 -2.5082 0.7568 22 6 0.9178 -2.9148 -1.3949 23 6 1.3042 -4.3456 -0.9847 24 6 2.2979 -3.7102 0.0021 25 1 3.2833 -3.5283 -0.4268 26 6 2.3599 -4.4138 1.3334 27 7 3.0741 -5.5495 1.4627 28 8 1.7673 -3.9580 2.2883 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1386 0.5138 34 1 3.0416 0.9508 -1.9563 35 1 1.5000 1.8407 -1.9564 36 1 3.4278 3.3990 -0.6025 37 1 3.6882 5.6272 -2.0953 38 1 5.2290 4.7361 -2.0966 39 1 6.8476 9.3163 -5.6300 40 1 1.5255 -2.5140 -2.2061 41 1 -0.1512 -2.7818 -1.5613 42 1 1.7835 -4.9139 -1.7817 43 1 0.4968 -4.8937 -0.4992 44 1 3.1137 -6.0026 2.3195 45 1 3.5448 -5.9161 0.6979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284497489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:01 Heat of formation + Delta-G solvation = -125.783916 kcal Electronic energy + Delta-G solvation = -26836.047710 eV Core-core repulsion = 22785.980344 eV Total energy + Delta-G solvation = -4050.067366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98963 -40.76429 -40.22255 -38.17324 -37.12178 -35.62224 -34.67337 -34.61989 -32.02669 -29.99367 -28.05560 -27.87544 -27.81773 -26.96762 -24.06691 -22.45288 -21.97784 -20.95067 -20.05117 -19.81812 -18.91619 -18.16151 -17.99289 -17.59732 -17.53491 -17.09615 -16.97866 -16.75817 -16.20871 -15.87752 -15.59774 -15.49956 -15.25549 -14.97222 -14.83890 -14.67023 -14.07681 -13.97478 -13.75551 -13.67612 -13.35407 -13.24001 -13.10491 -13.01665 -12.92224 -12.65945 -12.57995 -12.38969 -12.07032 -11.87471 -11.52440 -11.17212 -11.14543 -10.89877 -10.75921 -10.66670 -10.54715 -10.22931 -9.81512 -9.00401 -8.51690 -6.22815 0.96746 1.31180 1.43275 1.49135 1.51966 1.54226 1.58121 1.79686 2.24610 2.37636 2.63261 2.73012 2.86436 3.24797 3.48355 3.56667 3.68422 3.76635 3.89466 3.91681 4.04992 4.22395 4.27454 4.29805 4.35441 4.46074 4.61479 4.64880 4.67365 4.72049 4.81920 4.87285 4.94613 4.98688 5.01848 5.24146 5.33958 5.48390 5.70569 5.87651 6.11332 6.26742 6.40074 6.43194 6.93350 7.05965 7.14006 7.31628 8.60628 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.001749 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.870260 B =16005.320123 C =16158.850495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.611 5.611 3 C 0.110 3.890 4 C 0.116 3.884 5 N -0.710 5.710 6 C 0.536 3.464 7 O -0.563 6.563 8 C -0.111 4.111 9 S -0.176 6.176 10 C -0.529 4.529 11 H 0.063 0.937 12 C 0.045 3.955 13 N -0.916 5.916 14 Si 0.915 3.085 15 H -0.261 1.261 16 H -0.259 1.259 17 H -0.238 1.238 18 C 0.517 3.483 19 O -0.581 6.581 20 C -0.117 4.117 21 H 0.130 0.870 22 C -0.117 4.117 23 C -0.106 4.106 24 C -0.125 4.125 25 H 0.120 0.880 26 C 0.525 3.475 27 N -0.836 5.836 28 O -0.592 6.592 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.419 0.581 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.277 0.723 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.406 0.594 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 -30.669 13.252 37.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C -0.014 4.014 4 C -0.009 4.009 5 N -0.364 5.364 6 C 0.322 3.678 7 O -0.441 6.441 8 C -0.262 4.262 9 S 0.051 5.949 10 C -0.677 4.677 11 H 0.081 0.919 12 C -0.160 4.160 13 N -0.554 5.554 14 Si 0.737 3.263 15 H -0.185 1.185 16 H -0.183 1.183 17 H -0.162 1.162 18 C 0.307 3.693 19 O -0.461 6.461 20 C -0.138 4.138 21 H 0.147 0.853 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.147 4.147 25 H 0.138 0.862 26 C 0.311 3.689 27 N -0.399 5.399 28 O -0.472 6.472 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.256 0.744 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.238 0.762 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -16.226 -30.972 11.968 36.956 hybrid contribution 1.271 1.025 1.107 1.973 sum -14.955 -29.947 13.076 35.937 Atomic orbital electron populations 1.22178 0.76516 1.05181 1.03527 1.47811 1.08746 1.04836 1.72884 1.21540 0.99067 0.86275 0.94489 1.21589 0.96337 0.84484 0.98515 1.45545 1.58514 1.24034 1.08347 1.19981 0.78546 0.85407 0.83888 1.90688 1.55252 1.65369 1.32799 1.23264 1.04268 0.97764 1.00887 1.84712 1.74066 1.27558 1.08604 1.22461 1.41429 1.07142 0.96672 0.91900 1.25572 0.93248 0.94006 1.03198 1.70018 1.37434 1.14065 1.33905 0.85859 0.79354 0.81461 0.79649 1.18524 1.18343 1.16191 1.21094 0.87535 0.86429 0.74288 1.90683 1.15945 1.87941 1.51486 1.22778 0.99361 0.89322 1.02366 0.85265 1.22863 1.03682 0.95904 0.92974 1.22812 0.97486 0.96603 0.97424 1.22769 1.01926 0.96007 0.93972 0.86226 1.20709 0.77233 0.80923 0.90054 1.43720 1.52484 1.26355 1.17296 1.90709 1.47326 1.67050 1.42150 0.90942 0.89275 0.89109 0.86378 0.90472 0.94102 0.91007 0.74385 0.86340 0.86910 0.91360 0.89919 0.87395 0.87859 0.88171 0.76223 0.75105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.10 127.77 1.29 1.83 16 2 N -0.61 -9.72 2.87 -846.77 -2.43 -12.16 16 3 C 0.11 1.81 5.52 86.38 0.48 2.29 16 4 C 0.12 2.59 6.00 86.38 0.52 3.11 16 5 N -0.71 -17.17 5.56 -463.04 -2.57 -19.74 16 6 C 0.54 18.74 7.85 87.65 0.69 19.43 16 7 O -0.56 -24.55 15.86 -3.04 -0.05 -24.59 16 8 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16 9 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 10 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 11 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 12 C 0.05 2.67 5.50 84.86 0.47 3.13 16 13 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 14 Si 0.91 45.21 27.74 68.60 1.90 47.11 16 15 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 18 C 0.52 10.71 7.20 87.66 0.63 11.34 16 19 O -0.58 -17.03 15.48 -3.03 -0.05 -17.08 16 20 C -0.12 -1.64 2.09 -11.01 -0.02 -1.66 16 21 H 0.13 1.76 7.18 -2.39 -0.02 1.74 16 22 C -0.12 -0.93 6.91 31.12 0.22 -0.72 16 23 C -0.11 -0.63 7.63 31.12 0.24 -0.39 16 24 C -0.13 -1.63 3.47 -11.01 -0.04 -1.66 16 25 H 0.12 1.81 7.44 -2.39 -0.02 1.79 16 26 C 0.53 8.39 7.62 87.66 0.67 9.05 16 27 N -0.84 -6.55 8.87 -173.53 -1.54 -8.09 16 28 O -0.59 -14.66 16.76 -3.03 -0.05 -14.71 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.52 8.07 -2.39 -0.02 0.50 16 31 H 0.09 0.45 5.79 -2.39 -0.01 0.44 16 32 H 0.12 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.08 1.54 7.42 -2.39 -0.02 1.52 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.42 7.17 8.47 -92.71 -0.79 6.38 16 37 H 0.12 4.01 8.14 -2.40 -0.02 3.99 16 38 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 39 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 41 H 0.11 0.38 7.68 -2.39 -0.02 0.36 16 42 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.10 0.44 8.09 -2.39 -0.02 0.42 16 44 H 0.41 2.57 8.93 -92.71 -0.83 1.74 16 45 H 0.42 0.74 8.83 -92.70 -0.82 -0.08 16 Total: -1.00 -89.88 391.97 -0.70 -90.58 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.42 Total: 12.70 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.25 Total: 11.69 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -6.24 Total: -95.69 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.15 Total: -56.38 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -89.88 -0.70 -90.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284497489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.205 kcal (2) G-P(sol) polarization free energy of solvation -89.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds