Wall clock time and date at job start Wed Apr 1 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.52996 * 109.47364 * 90.00208 * 3 2 1 5 5 N 1.46500 * 109.47364 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99750 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00341 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99618 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.47313 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00258 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 8 13 13 C 1.53001 * 117.49756 * 248.61806 * 12 10 9 14 14 C 1.52999 * 59.99986 * 252.51526 * 13 12 10 15 15 C 1.34785 * 120.00066 * 179.97438 * 2 1 3 16 16 O 1.21278 * 119.99774 * 179.97438 * 15 2 1 17 17 C 1.50702 * 119.99922 * 0.02562 * 15 2 1 18 18 S 1.80992 * 109.47016 * 180.02562 * 17 15 2 19 19 C 1.76206 * 99.99870 * 179.97438 * 18 17 15 20 20 H 1.07991 * 119.99723 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99678 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00372 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99634 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47110 * 89.99679 * 23 21 19 25 25 H 1.48504 * 109.47153 * 209.99746 * 23 21 19 26 26 H 1.48503 * 109.47496 * 330.00023 * 23 21 19 27 27 H 1.09007 * 109.46905 * 90.00367 * 1 2 3 28 28 H 1.09001 * 109.47062 * 210.00061 * 1 2 3 29 29 H 1.08999 * 109.47161 * 330.00407 * 1 2 3 30 30 H 1.09004 * 109.46923 * 329.99481 * 3 2 1 31 31 H 1.09004 * 109.47042 * 209.99895 * 3 2 1 32 32 H 1.09000 * 109.47196 * 59.99741 * 4 3 2 33 33 H 1.09004 * 109.46785 * 299.99845 * 4 3 2 34 34 H 0.96996 * 119.99986 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.47247 * 60.00376 * 8 6 5 36 36 H 1.09004 * 109.47103 * 300.00254 * 8 6 5 37 37 H 0.96999 * 119.99694 * 359.97438 * 9 8 6 38 38 H 1.08996 * 115.55128 * 34.33271 * 12 10 9 39 39 H 1.09004 * 117.49834 * 0.02562 * 13 12 10 40 40 H 1.08997 * 117.49999 * 145.02096 * 13 12 10 41 41 H 1.09004 * 117.50109 * 252.51157 * 14 13 12 42 42 H 1.08998 * 117.52032 * 107.48340 * 14 13 12 43 43 H 1.08999 * 109.46429 * 299.99587 * 17 15 2 44 44 H 1.08997 * 109.46931 * 59.99286 * 17 15 2 45 45 H 0.97003 * 120.00617 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 7 3.1856 2.9788 1.4424 6 6 3.5222 3.5626 2.6097 7 8 3.2186 3.0376 3.6600 8 6 4.2757 4.8676 2.6096 9 7 4.5201 5.2905 3.9908 10 6 5.1822 6.4383 4.2370 11 8 5.5762 7.1209 3.3152 12 6 5.4330 6.8735 5.6579 13 6 4.6891 8.1131 6.1588 14 6 6.1901 8.1858 5.8715 15 6 2.1389 -1.1673 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3854 -2.4724 0.0005 18 16 2.5615 -3.8480 0.0020 19 6 1.4414 -5.2083 0.0026 20 1 0.3762 -5.0305 0.0024 21 6 1.9282 -6.5081 0.0043 22 7 3.2265 -6.7247 0.0050 23 14 0.7407 -7.9500 0.0055 24 1 0.4265 -8.3337 -1.3942 25 1 1.3618 -9.1022 0.7071 26 1 -0.5102 -7.5606 0.7047 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0284 -0.5139 31 1 3.1499 1.1384 -0.5138 32 1 3.0416 0.9508 1.9563 33 1 1.5001 1.8408 1.9563 34 1 3.4286 3.3985 0.6024 35 1 3.6868 5.6272 2.0956 36 1 5.2283 4.7372 2.0960 37 1 4.2046 4.7448 4.7281 38 1 5.6090 6.0690 6.3719 39 1 4.0180 8.6136 5.4608 40 1 4.3753 8.1242 7.2026 41 1 6.8639 8.2447 6.7263 42 1 6.5071 8.7341 4.9844 43 1 0.7585 -2.5298 0.8903 44 1 0.7590 -2.5302 -0.8896 45 1 3.5667 -7.6331 0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284498631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:25 Heat of formation + Delta-G solvation = -109.037600 kcal Electronic energy + Delta-G solvation = -25933.350325 eV Core-core repulsion = 21884.009134 eV Total energy + Delta-G solvation = -4049.341191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45625 -40.94099 -40.40678 -37.33414 -37.09352 -35.81444 -35.49753 -34.59039 -32.14838 -30.32032 -28.84641 -27.70037 -27.29115 -25.06125 -23.85331 -23.30422 -21.89111 -21.30155 -20.62345 -19.56182 -18.97588 -18.13266 -17.91094 -17.59363 -17.18953 -17.04088 -16.88566 -16.72011 -16.30369 -16.13301 -15.76958 -15.61152 -15.20129 -14.91905 -14.49733 -14.47720 -14.31291 -14.20437 -13.66672 -13.57514 -13.54073 -13.24395 -13.17007 -13.05252 -12.88684 -12.64606 -12.44075 -12.39122 -11.72537 -11.57086 -11.49100 -11.30501 -11.14553 -11.06893 -10.93813 -10.39135 -10.27487 -10.21839 -9.80434 -8.68137 -8.35097 -6.13585 1.22488 1.34447 1.40978 1.41736 1.42428 1.49809 1.55629 1.67303 2.07971 2.26920 2.45264 2.90638 2.99304 3.25605 3.50707 3.68331 3.71425 3.81429 3.86067 3.98078 4.01600 4.19172 4.20862 4.26290 4.32090 4.32631 4.36946 4.48003 4.68942 4.73126 4.74379 4.88252 4.90798 4.96745 5.01508 5.15884 5.18977 5.23678 5.41326 5.52307 6.18306 6.20402 6.31551 6.37492 7.00507 7.06248 7.08012 7.09853 8.74133 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.001513 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.073143 B =18504.229031 C =18993.746404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.110 3.890 4 C 0.112 3.888 5 N -0.705 5.705 6 C 0.511 3.489 7 O -0.575 6.575 8 C 0.104 3.896 9 N -0.713 5.713 10 C 0.543 3.457 11 O -0.580 6.580 12 C -0.207 4.207 13 C -0.141 4.141 14 C -0.150 4.150 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.125 4.125 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.257 1.257 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.423 0.577 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.416 0.584 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 30.246 6.686 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.013 4.013 4 C -0.013 4.013 5 N -0.359 5.359 6 C 0.298 3.702 7 O -0.454 6.454 8 C -0.023 4.023 9 N -0.367 5.367 10 C 0.331 3.669 11 O -0.460 6.460 12 C -0.228 4.228 13 C -0.178 4.178 14 C -0.187 4.187 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.276 4.276 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.181 1.181 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.260 0.740 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.255 0.745 38 H 0.162 0.838 39 H 0.110 0.890 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.407 30.214 6.737 31.143 hybrid contribution -1.562 -1.478 -0.133 2.154 sum -4.970 28.737 6.604 29.901 Atomic orbital electron populations 1.22162 0.76411 1.04876 1.03788 1.47721 1.08678 1.04303 1.73639 1.21636 0.99193 0.85506 0.94986 1.21576 0.96598 0.84725 0.98411 1.45541 1.57646 1.23509 1.09181 1.20788 0.79048 0.86650 0.83734 1.90723 1.56136 1.65931 1.32628 1.21122 1.01943 0.93553 0.85680 1.45694 1.58008 1.24343 1.08686 1.20142 0.76097 0.79666 0.90974 1.90684 1.52779 1.55225 1.47287 1.22266 1.11104 0.95415 0.93969 1.23055 0.95102 0.96146 1.03489 1.23028 0.95505 0.96101 1.04059 1.20196 0.87294 0.85629 0.75095 1.90691 1.15657 1.87461 1.50133 1.23387 1.02746 0.94948 1.06513 1.85597 1.12751 0.97451 1.97043 1.23193 0.94631 0.92602 1.58888 0.89826 1.26125 0.97566 1.01702 0.93707 1.70182 1.14153 1.22468 1.48009 0.84955 0.77899 0.76305 0.78829 1.19217 1.20421 1.18131 0.90419 0.90895 0.87966 0.85149 0.90497 0.94767 0.90433 0.73951 0.86290 0.87279 0.74547 0.83766 0.88951 0.85308 0.85736 0.89178 0.87460 0.87148 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.24 127.77 1.31 2.31 16 2 N -0.61 -14.13 2.87 -846.74 -2.43 -16.56 16 3 C 0.11 1.91 5.52 86.38 0.48 2.38 16 4 C 0.11 2.20 6.00 86.38 0.52 2.72 16 5 N -0.71 -10.07 5.56 -463.06 -2.57 -12.65 16 6 C 0.51 9.23 7.90 87.66 0.69 9.92 16 7 O -0.57 -15.20 15.67 -3.04 -0.05 -15.25 16 8 C 0.10 1.44 6.15 85.63 0.53 1.96 16 9 N -0.71 -11.42 5.53 -466.79 -2.58 -14.00 16 10 C 0.54 9.82 7.61 87.66 0.67 10.48 16 11 O -0.58 -14.35 16.26 -3.03 -0.05 -14.40 16 12 C -0.21 -2.50 6.19 -11.54 -0.07 -2.57 16 13 C -0.14 -1.27 10.23 30.59 0.31 -0.96 16 14 C -0.15 -1.62 10.04 30.59 0.31 -1.32 16 15 C 0.53 19.03 7.69 87.66 0.67 19.70 16 16 O -0.56 -25.38 15.44 -3.02 -0.05 -25.43 16 17 C -0.12 -4.86 4.71 71.24 0.34 -4.53 16 18 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 19 C -0.55 -30.94 9.50 67.95 0.65 -30.29 16 20 H 0.08 4.38 7.80 -2.92 -0.02 4.35 16 21 C 0.01 0.78 5.49 84.86 0.47 1.24 16 22 N -0.91 -55.99 13.22 21.65 0.29 -55.71 16 23 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.07 1.17 6.44 -2.39 -0.02 1.15 16 29 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 30 H 0.13 1.06 8.07 -2.39 -0.02 1.04 16 31 H 0.08 1.64 7.42 -2.38 -0.02 1.62 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.42 2.96 8.47 -92.71 -0.79 2.18 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.42 6.50 7.44 -92.71 -0.69 5.81 16 38 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.09 1.33 7.67 -2.39 -0.02 1.31 16 43 H 0.11 3.80 7.40 -2.40 -0.02 3.78 16 44 H 0.11 3.83 8.11 -2.40 -0.02 3.81 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -88.56 401.76 -0.17 -88.73 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.45 Total: 18.66 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.86 Total: 11.06 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -7.30 Total: -98.91 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -0.14 Total: -55.07 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -88.56 -0.17 -88.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284498631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.311 kcal (2) G-P(sol) polarization free energy of solvation -88.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds