Wall clock time and date at job start Wed Apr 1 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99978 * 2 1 4 4 O 1.21286 * 120.00078 * 354.99825 * 3 2 1 5 5 C 1.50695 * 120.00421 * 175.00067 * 3 2 1 6 6 C 1.50704 * 115.54998 * 65.94415 * 5 3 2 7 7 O 1.21279 * 120.00380 * 245.66418 * 6 5 3 8 8 N 1.34778 * 119.99617 * 65.66809 * 6 5 3 9 9 C 1.46498 * 120.00008 * 174.98202 * 8 6 5 10 10 C 1.53001 * 109.47173 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46999 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.46936 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00161 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99807 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00488 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.47448 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00146 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00106 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99499 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00039 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47079 * 60.00099 * 21 19 17 23 23 H 1.48499 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47036 * 300.00415 * 21 19 17 25 25 C 1.52998 * 117.50256 * 211.61967 * 5 3 2 26 26 C 1.53002 * 117.49789 * 280.28267 * 5 3 2 27 27 H 1.09002 * 109.47071 * 300.00230 * 1 2 3 28 28 H 1.08993 * 109.46786 * 60.00379 * 1 2 3 29 29 H 1.09001 * 109.46764 * 180.02562 * 1 2 3 30 30 H 0.96997 * 120.00238 * 179.97438 * 2 1 3 31 31 H 0.97003 * 119.99955 * 354.97517 * 8 6 5 32 32 H 1.08994 * 109.47346 * 59.99618 * 9 8 6 33 33 H 1.09004 * 109.46982 * 299.99497 * 9 8 6 34 34 H 1.08993 * 109.47010 * 300.00269 * 10 9 8 35 35 H 1.09004 * 109.47046 * 59.99961 * 10 9 8 36 36 H 1.08994 * 109.47168 * 300.00444 * 11 10 9 37 37 H 1.09004 * 109.46823 * 60.00351 * 11 10 9 38 38 H 0.97003 * 119.99960 * 0.02562 * 12 11 10 39 39 H 1.09004 * 109.46731 * 299.99971 * 15 13 12 40 40 H 1.09004 * 109.47117 * 59.99945 * 15 13 12 41 41 H 0.97002 * 119.99564 * 179.97438 * 20 19 17 42 42 H 1.08998 * 117.49986 * 214.99774 * 25 5 3 43 43 H 1.08998 * 117.49925 * 0.02562 * 25 5 3 44 44 H 1.08996 * 117.49883 * 359.97271 * 26 5 3 45 45 H 1.09008 * 117.50164 * 144.97497 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2156 -0.0916 5 6 3.6416 1.1698 0.1137 6 6 4.3825 0.5631 -1.0499 7 8 5.0265 -0.4529 -0.8956 8 7 4.3296 1.1498 -2.2622 9 6 5.1364 0.6241 -3.3662 10 6 4.8927 1.4646 -4.6212 11 6 5.7358 0.9160 -5.7741 12 7 5.5020 1.7203 -6.9759 13 6 6.1421 1.4196 -8.1232 14 8 6.9113 0.4827 -8.1607 15 6 5.9020 2.2473 -9.3594 16 16 6.8993 1.5983 -10.7233 17 6 6.4360 2.7191 -12.0015 18 1 5.7277 3.5082 -11.7971 19 6 6.9823 2.5883 -13.2708 20 7 7.8460 1.6267 -13.5197 21 14 6.4917 3.7769 -14.6257 22 1 6.8478 5.1611 -14.2228 23 1 7.2097 3.4249 -15.8770 24 1 5.0270 3.6894 -14.8546 25 6 4.2942 2.3566 0.8255 26 6 4.2448 0.9872 1.5079 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9501 -0.8400 0.0004 31 1 3.7571 1.9200 -2.4036 32 1 4.8545 -0.4104 -3.5618 33 1 6.1920 0.6687 -3.0981 34 1 3.8371 1.4198 -4.8892 35 1 5.1743 2.4994 -4.4259 36 1 6.7913 0.9611 -5.5059 37 1 5.4545 -0.1188 -5.9695 38 1 4.8864 2.4694 -6.9460 39 1 4.8463 2.2025 -9.6273 40 1 6.1837 3.2821 -9.1642 41 1 8.2274 1.5351 -14.4068 42 1 5.2594 2.6985 0.4521 43 1 3.6367 3.1353 1.2119 44 1 3.5548 0.8656 2.3428 45 1 5.1775 0.4280 1.5835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293156132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:58 Heat of formation + Delta-G solvation = -91.470101 kcal Electronic energy + Delta-G solvation = -25926.590377 eV Core-core repulsion = 21878.010970 eV Total energy + Delta-G solvation = -4048.579407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23432 -39.58591 -39.18741 -36.92312 -36.20228 -35.17723 -34.56235 -32.43716 -31.73340 -29.25285 -28.21479 -26.26882 -25.46984 -24.27757 -23.07280 -22.22419 -22.03800 -20.41527 -20.25914 -18.80417 -17.82091 -16.92411 -16.75758 -16.47414 -16.31081 -16.24881 -15.86143 -15.44989 -15.33271 -14.99752 -14.81123 -14.59655 -14.32645 -13.90945 -13.59169 -13.37913 -13.16475 -13.10271 -12.86805 -12.71338 -12.39081 -12.24655 -12.00716 -11.98373 -11.73878 -11.37711 -11.24754 -11.05511 -11.04407 -10.78133 -10.70979 -10.23499 -9.83659 -9.76340 -9.60693 -9.44954 -9.07374 -8.94469 -8.25312 -6.51221 -6.22282 -3.93184 1.77973 1.96878 2.41075 2.46290 3.01537 3.06589 3.16851 3.22948 3.27170 3.30723 3.68195 3.99839 4.02119 4.15201 4.16896 4.19770 4.54035 4.54560 4.63333 4.66458 4.93055 4.95626 5.04789 5.12764 5.14043 5.16913 5.20788 5.23750 5.24299 5.44282 5.47080 5.60126 5.72866 5.72935 5.83167 5.87682 5.88540 6.11783 6.54622 6.77798 6.90108 7.51773 7.58385 7.61106 7.65267 8.34185 8.57357 9.22826 10.85083 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023690 B = 0.001447 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.667764 B =19350.774894 C =19804.983129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.727 5.727 3 C 0.556 3.444 4 O -0.526 6.526 5 C -0.203 4.203 6 C 0.556 3.444 7 O -0.525 6.525 8 N -0.721 5.721 9 C 0.121 3.879 10 C -0.144 4.144 11 C 0.125 3.875 12 N -0.740 5.740 13 C 0.531 3.469 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.126 4.126 26 C -0.126 4.126 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.407 0.593 31 H 0.405 0.595 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 -0.188 32.354 35.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.378 5.378 3 C 0.340 3.660 4 O -0.401 6.401 5 C -0.210 4.210 6 C 0.340 3.660 7 O -0.400 6.400 8 N -0.372 5.372 9 C -0.003 4.003 10 C -0.182 4.182 11 C 0.000 4.000 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.163 4.163 26 C -0.164 4.164 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.241 0.759 31 H 0.240 0.760 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.915 -1.843 32.191 34.375 hybrid contribution -1.676 2.135 -0.973 2.883 sum -13.590 0.292 31.218 34.049 Atomic orbital electron populations 1.21624 0.78777 1.02777 1.02620 1.45765 1.08100 1.08732 1.75185 1.19100 0.86862 0.83914 0.76092 1.90748 1.69378 1.31435 1.48551 1.21486 0.92999 1.10066 0.96412 1.19022 0.80748 0.83647 0.82582 1.90757 1.42233 1.23226 1.83792 1.45948 1.46813 1.34408 1.10034 1.21317 0.95919 0.98286 0.84730 1.21984 1.01581 1.00582 0.94041 1.21089 0.99791 0.95564 0.83537 1.45963 1.48371 1.34952 1.10216 1.20321 0.79578 0.84616 0.83727 1.90711 1.34873 1.29126 1.84313 1.23533 1.06104 1.02584 0.98208 1.85406 1.55603 1.42517 0.99804 1.22829 1.31250 1.17548 0.96900 0.90964 1.24992 0.94588 0.95997 0.97978 1.70009 1.27463 1.30430 1.22351 0.86220 0.78721 0.80518 0.80011 1.19939 1.20793 1.19951 1.23121 1.02019 0.91383 0.99803 1.23114 1.03042 0.99455 0.90757 0.91953 0.91800 0.90210 0.75873 0.76001 0.90583 0.90574 0.90409 0.90308 0.91188 0.91230 0.76787 0.89198 0.89188 0.92112 0.87134 0.86646 0.87343 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.71 59.85 0.64 1.01 16 2 N -0.73 -4.09 5.71 -67.08 -0.38 -4.47 16 3 C 0.56 4.31 7.06 -10.99 -0.08 4.23 16 4 O -0.53 -5.66 16.72 5.55 0.09 -5.57 16 5 C -0.20 -1.36 2.28 -156.81 -0.36 -1.72 16 6 C 0.56 4.66 7.07 -10.98 -0.08 4.58 16 7 O -0.52 -6.03 16.71 5.56 0.09 -5.94 16 8 N -0.72 -4.97 5.55 -60.29 -0.33 -5.30 16 9 C 0.12 0.88 5.68 -4.04 -0.02 0.85 16 10 C -0.14 -0.93 5.44 -26.73 -0.15 -1.08 16 11 C 0.13 1.30 5.67 -4.04 -0.02 1.27 16 12 N -0.74 -9.21 5.56 -60.30 -0.33 -9.54 16 13 C 0.53 9.70 7.85 -10.99 -0.09 9.62 16 14 O -0.52 -11.63 15.86 5.56 0.09 -11.55 16 15 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 21 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.13 -0.66 9.76 -26.69 -0.26 -0.92 16 26 C -0.13 -0.64 9.76 -26.69 -0.26 -0.90 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.41 1.77 8.83 -40.82 -0.36 1.41 16 31 H 0.41 2.28 8.48 -40.82 -0.35 1.93 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 39 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 40 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.12 0.61 8.00 -51.93 -0.42 0.19 16 44 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.12 0.62 8.00 -51.92 -0.42 0.21 16 LS Contribution 406.95 15.07 6.13 6.13 Total: -1.00 -38.35 406.95 -8.32 -46.67 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.92 Total: 1.32 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.25 Total: 1.16 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.32 Total: -44.70 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.27 Total: -23.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.35 -8.32 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293156132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.802 kcal (2) G-P(sol) polarization free energy of solvation -38.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds