Wall clock time and date at job start Wed Apr 1 2020 02:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99978 * 2 1 4 4 O 1.21286 * 120.00078 * 354.99825 * 3 2 1 5 5 C 1.50695 * 120.00421 * 175.00067 * 3 2 1 6 6 C 1.50704 * 115.54998 * 65.94415 * 5 3 2 7 7 O 1.21279 * 120.00380 * 245.66418 * 6 5 3 8 8 N 1.34778 * 119.99617 * 65.66809 * 6 5 3 9 9 C 1.46498 * 120.00008 * 174.98202 * 8 6 5 10 10 C 1.53001 * 109.47173 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46999 * 179.97438 * 10 9 8 12 12 N 1.46495 * 109.46936 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00161 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99807 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00488 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.47448 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00146 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00106 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99499 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00039 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47079 * 60.00099 * 21 19 17 23 23 H 1.48499 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47036 * 300.00415 * 21 19 17 25 25 C 1.52998 * 117.50256 * 211.61967 * 5 3 2 26 26 C 1.53002 * 117.49789 * 280.28267 * 5 3 2 27 27 H 1.09002 * 109.47071 * 300.00230 * 1 2 3 28 28 H 1.08993 * 109.46786 * 60.00379 * 1 2 3 29 29 H 1.09001 * 109.46764 * 180.02562 * 1 2 3 30 30 H 0.96997 * 120.00238 * 179.97438 * 2 1 3 31 31 H 0.97003 * 119.99955 * 354.97517 * 8 6 5 32 32 H 1.08994 * 109.47346 * 59.99618 * 9 8 6 33 33 H 1.09004 * 109.46982 * 299.99497 * 9 8 6 34 34 H 1.08993 * 109.47010 * 300.00269 * 10 9 8 35 35 H 1.09004 * 109.47046 * 59.99961 * 10 9 8 36 36 H 1.08994 * 109.47168 * 300.00444 * 11 10 9 37 37 H 1.09004 * 109.46823 * 60.00351 * 11 10 9 38 38 H 0.97003 * 119.99960 * 0.02562 * 12 11 10 39 39 H 1.09004 * 109.46731 * 299.99971 * 15 13 12 40 40 H 1.09004 * 109.47117 * 59.99945 * 15 13 12 41 41 H 0.97002 * 119.99564 * 179.97438 * 20 19 17 42 42 H 1.08998 * 117.49986 * 214.99774 * 25 5 3 43 43 H 1.08998 * 117.49925 * 0.02562 * 25 5 3 44 44 H 1.08996 * 117.49883 * 359.97271 * 26 5 3 45 45 H 1.09008 * 117.50164 * 144.97497 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2156 -0.0916 5 6 3.6416 1.1698 0.1137 6 6 4.3825 0.5631 -1.0499 7 8 5.0265 -0.4529 -0.8956 8 7 4.3296 1.1498 -2.2622 9 6 5.1364 0.6241 -3.3662 10 6 4.8927 1.4646 -4.6212 11 6 5.7358 0.9160 -5.7741 12 7 5.5020 1.7203 -6.9759 13 6 6.1421 1.4196 -8.1232 14 8 6.9113 0.4827 -8.1607 15 6 5.9020 2.2473 -9.3594 16 16 6.8993 1.5983 -10.7233 17 6 6.4360 2.7191 -12.0015 18 1 5.7277 3.5082 -11.7971 19 6 6.9823 2.5883 -13.2708 20 7 7.8460 1.6267 -13.5197 21 14 6.4917 3.7769 -14.6257 22 1 6.8478 5.1611 -14.2228 23 1 7.2097 3.4249 -15.8770 24 1 5.0270 3.6894 -14.8546 25 6 4.2942 2.3566 0.8255 26 6 4.2448 0.9872 1.5079 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9501 -0.8400 0.0004 31 1 3.7571 1.9200 -2.4036 32 1 4.8545 -0.4104 -3.5618 33 1 6.1920 0.6687 -3.0981 34 1 3.8371 1.4198 -4.8892 35 1 5.1743 2.4994 -4.4259 36 1 6.7913 0.9611 -5.5059 37 1 5.4545 -0.1188 -5.9695 38 1 4.8864 2.4694 -6.9460 39 1 4.8463 2.2025 -9.6273 40 1 6.1837 3.2821 -9.1642 41 1 8.2274 1.5351 -14.4068 42 1 5.2594 2.6985 0.4521 43 1 3.6367 3.1353 1.2119 44 1 3.5548 0.8656 2.3428 45 1 5.1775 0.4280 1.5835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293156132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:57 Heat of formation + Delta-G solvation = -122.858157 kcal Electronic energy + Delta-G solvation = -25927.951465 eV Core-core repulsion = 21878.010970 eV Total energy + Delta-G solvation = -4049.940496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81902 -40.63473 -40.16530 -37.55502 -36.92183 -35.72551 -35.56210 -34.57947 -32.73177 -30.59850 -28.69555 -27.71051 -26.93830 -24.92829 -23.47685 -22.91750 -22.65860 -21.73493 -20.87408 -19.84583 -19.32877 -17.77922 -17.61894 -17.36218 -17.09206 -17.03372 -16.87814 -16.81482 -16.35657 -16.14039 -15.72273 -15.70818 -15.20887 -15.07040 -14.69723 -14.40050 -14.14645 -14.06673 -13.87447 -13.37870 -13.27153 -13.17110 -13.16540 -12.86090 -12.68447 -12.62821 -12.60617 -12.26387 -12.12602 -11.75730 -11.71879 -11.29902 -11.12427 -10.99572 -10.87552 -10.27844 -10.27408 -10.23522 -10.12721 -8.66531 -8.34054 -6.12396 1.17242 1.26921 1.36196 1.44409 1.47123 1.56529 1.61097 1.85450 2.00239 2.27500 2.33982 2.68877 3.00056 3.32430 3.48171 3.54780 3.66268 3.73633 3.85235 3.92447 3.93849 4.11145 4.30778 4.38681 4.49261 4.51978 4.53901 4.56149 4.58060 4.64012 4.74515 4.83743 4.90402 5.05621 5.05790 5.08230 5.26062 5.27718 5.41802 5.42542 6.20062 6.27131 6.35076 6.50765 6.97050 7.02872 7.07107 7.24800 8.74885 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023690 B = 0.001447 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.667764 B =19350.774894 C =19804.983129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.719 5.719 3 C 0.556 3.444 4 O -0.560 6.560 5 C -0.211 4.211 6 C 0.557 3.443 7 O -0.560 6.560 8 N -0.711 5.711 9 C 0.123 3.877 10 C -0.125 4.125 11 C 0.122 3.878 12 N -0.712 5.712 13 C 0.532 3.468 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.154 6.154 17 C -0.548 4.548 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.107 0.893 30 H 0.414 0.586 31 H 0.414 0.586 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.418 0.582 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 1.591 33.394 36.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.370 5.370 3 C 0.341 3.659 4 O -0.438 6.438 5 C -0.218 4.218 6 C 0.342 3.658 7 O -0.438 6.438 8 N -0.362 5.362 9 C -0.001 4.001 10 C -0.163 4.163 11 C -0.002 4.002 12 N -0.366 5.366 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.073 5.927 17 C -0.695 4.695 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.156 4.156 26 C -0.155 4.155 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.249 0.751 31 H 0.250 0.750 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.256 0.744 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.863 -0.037 33.273 36.046 hybrid contribution -1.141 1.544 -1.150 2.238 sum -15.004 1.507 32.124 35.487 Atomic orbital electron populations 1.21758 0.77909 1.04451 1.02014 1.45817 1.08781 1.08524 1.73878 1.19233 0.87160 0.83882 0.75627 1.90729 1.70068 1.32599 1.50443 1.21405 0.92328 1.11473 0.96581 1.19252 0.80255 0.83123 0.83130 1.90743 1.43908 1.24777 1.84358 1.45873 1.46433 1.34338 1.09560 1.21228 0.95665 0.98038 0.85136 1.21812 1.01634 1.01016 0.91798 1.21213 1.00241 0.95085 0.83654 1.45673 1.46874 1.35046 1.09009 1.20080 0.79609 0.83815 0.84697 1.90701 1.37437 1.31270 1.85160 1.23377 1.05492 1.03310 0.95914 1.85599 1.58631 1.44622 1.03862 1.23183 1.31409 1.17631 0.97319 0.89809 1.26133 0.94301 0.97870 1.00850 1.70182 1.28920 1.32596 1.23063 0.85002 0.78779 0.78028 0.76173 1.18631 1.20456 1.18658 1.23193 1.02113 0.91242 0.99080 1.23195 1.02984 0.99129 0.90170 0.92174 0.92772 0.87452 0.75069 0.74983 0.91514 0.91175 0.88805 0.88403 0.92049 0.92224 0.74420 0.87084 0.87048 0.92009 0.86350 0.86510 0.86002 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.71 127.77 1.37 1.96 16 2 N -0.72 -7.21 5.71 -484.52 -2.77 -9.98 16 3 C 0.56 8.03 7.06 87.66 0.62 8.65 16 4 O -0.56 -11.63 16.72 -3.05 -0.05 -11.68 16 5 C -0.21 -2.59 2.28 -53.67 -0.12 -2.71 16 6 C 0.56 8.77 7.07 87.66 0.62 9.39 16 7 O -0.56 -12.62 16.71 -3.03 -0.05 -12.67 16 8 N -0.71 -8.67 5.55 -463.06 -2.57 -11.24 16 9 C 0.12 1.60 5.68 86.38 0.49 2.09 16 10 C -0.12 -1.28 5.44 30.60 0.17 -1.12 16 11 C 0.12 2.34 5.67 86.38 0.49 2.83 16 12 N -0.71 -16.09 5.56 -463.07 -2.57 -18.66 16 13 C 0.53 18.97 7.85 87.66 0.69 19.66 16 14 O -0.57 -26.03 15.86 -3.03 -0.05 -26.08 16 15 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 16 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 17 C -0.55 -31.08 9.50 67.96 0.65 -30.43 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 21 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C -0.12 -1.08 9.76 30.62 0.30 -0.78 16 26 C -0.12 -1.03 9.76 30.62 0.30 -0.73 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.41 3.05 8.83 -92.71 -0.82 2.24 16 31 H 0.41 3.76 8.48 -92.71 -0.79 2.97 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.42 6.25 8.47 -92.71 -0.79 5.46 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 43 H 0.12 1.07 8.00 -2.39 -0.02 1.05 16 44 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.11 1.10 8.00 -2.38 -0.02 1.08 16 Total: -1.00 -86.11 406.95 -1.79 -87.91 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -1.35 Total: 16.94 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 6.47 Total: 5.48 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -7.62 Total: -95.54 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.15 Total: -50.42 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -86.11 -1.79 -87.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293156132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.951 kcal (2) G-P(sol) polarization free energy of solvation -86.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds