Wall clock time and date at job start Wed Apr 1 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99865 * 2 1 4 4 O 1.21278 * 120.00151 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00075 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.46877 * 179.97438 * 5 3 2 7 7 O 1.21286 * 120.00156 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99787 * 179.97438 * 6 5 3 9 9 C 1.46498 * 119.99920 * 180.02562 * 8 6 5 10 10 C 1.53070 * 109.44278 * 84.79819 * 9 8 6 11 11 C 1.53195 * 109.29524 * 181.23594 * 10 9 8 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46922 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99932 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46948 * 90.00349 * 21 19 17 23 23 H 1.48500 * 109.47056 * 210.00208 * 21 19 17 24 24 H 1.48492 * 109.47222 * 330.00387 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.46033 * 205.00305 * 9 8 6 27 27 H 1.08999 * 109.47341 * 60.00647 * 1 2 3 28 28 H 1.09000 * 109.46706 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47510 * 299.99931 * 1 2 3 30 30 H 0.97003 * 120.00248 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46921 * 59.99636 * 5 3 2 32 32 H 1.09002 * 109.46661 * 299.99533 * 5 3 2 33 33 H 0.97004 * 120.00060 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.45852 * 324.97047 * 9 8 6 35 35 H 1.08997 * 109.38860 * 61.35781 * 10 9 8 36 36 H 1.09003 * 109.62046 * 301.25123 * 10 9 8 37 37 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 38 38 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 39 39 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 40 40 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 41 41 H 0.96997 * 119.99912 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 43 43 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 44 44 H 1.09002 * 109.49876 * 58.67575 * 26 9 8 45 45 H 1.09005 * 109.52615 * 298.59825 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1481 2.5882 -0.0011 7 8 3.3599 3.5100 -0.0015 8 7 5.4732 2.8345 -0.0011 9 6 5.9614 4.2157 -0.0011 10 6 6.0079 4.7396 1.4364 11 6 6.4894 6.1939 1.4299 12 7 7.7716 6.2673 0.7162 13 6 8.8485 6.8342 1.2955 14 8 8.7647 7.2894 2.4164 15 6 10.1568 6.9013 0.5507 16 16 11.3998 7.7125 1.5866 17 6 12.7863 7.6573 0.5007 18 1 12.6889 7.2093 -0.4771 19 6 14.0037 8.1897 0.9020 20 7 14.1226 8.7354 2.0940 21 14 15.4738 8.1307 -0.2489 22 1 15.4961 9.3566 -1.0867 23 1 16.7241 8.0534 0.5486 24 1 15.3700 6.9352 -1.1237 25 6 7.8577 5.7106 -0.6408 26 6 7.3643 4.2606 -0.6110 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 4.0089 0.6536 -0.8908 32 1 4.0095 0.6533 0.8892 33 1 6.1036 2.0972 -0.0012 34 1 5.2889 4.8386 -0.5910 35 1 6.6973 4.1307 2.0213 36 1 5.0123 4.6880 1.8772 37 1 6.6215 6.5397 2.4551 38 1 5.7539 6.8201 0.9250 39 1 10.4890 5.8919 0.3081 40 1 10.0225 7.4705 -0.3692 41 1 14.9734 9.1071 2.3746 42 1 7.2330 6.2954 -1.3160 43 1 8.8923 5.7398 -0.9827 44 1 7.3322 3.8664 -1.6267 45 1 8.0432 3.6575 -0.0081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293748001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:11 Heat of formation + Delta-G solvation = -105.297781 kcal Electronic energy + Delta-G solvation = -26955.588528 eV Core-core repulsion = 22906.409507 eV Total energy + Delta-G solvation = -4049.179021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76785 -39.95277 -38.97641 -37.18327 -35.01339 -34.58158 -32.43742 -32.26519 -31.55550 -30.60415 -28.83527 -26.91583 -25.52428 -24.73120 -23.39976 -21.67328 -21.01694 -20.55444 -19.16021 -17.87434 -17.79828 -17.34538 -16.78555 -16.40491 -15.99463 -15.77217 -15.59634 -15.31669 -14.99551 -14.81277 -14.33843 -14.10446 -13.94064 -13.83095 -13.76009 -13.44389 -13.16365 -12.96711 -12.73306 -12.70479 -12.45303 -12.30678 -12.08884 -11.81495 -11.44625 -11.12946 -11.06972 -11.03019 -10.88878 -10.76387 -10.51083 -9.81338 -9.74275 -9.56555 -9.40413 -9.25246 -9.07443 -8.54941 -8.22817 -6.50785 -6.22268 -3.92995 2.21614 2.41886 2.44004 2.92696 3.01446 3.13648 3.21491 3.25298 3.29373 3.58943 4.07422 4.19276 4.34992 4.48309 4.55048 4.68109 4.69381 4.80171 4.83391 4.90050 5.04768 5.05787 5.10725 5.12868 5.27222 5.34624 5.36842 5.53627 5.56307 5.60768 5.73935 5.80438 5.85736 5.91676 5.95820 6.06266 6.09946 6.21705 6.64161 6.97283 7.18689 7.55231 7.58791 7.81904 8.02070 8.34210 8.56385 9.22904 10.85120 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032912 B = 0.001728 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.541632 B =16197.487110 C =16685.001147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.509 3.491 4 O -0.490 6.490 5 C -0.166 4.166 6 C 0.511 3.489 7 O -0.493 6.493 8 N -0.730 5.730 9 C 0.148 3.852 10 C -0.142 4.142 11 C 0.116 3.884 12 N -0.621 5.621 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.112 3.888 26 C -0.142 4.142 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.400 0.600 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.067 -22.420 -7.946 32.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.292 3.708 4 O -0.362 6.362 5 C -0.209 4.209 6 C 0.295 3.705 7 O -0.365 6.365 8 N -0.383 5.383 9 C 0.044 3.956 10 C -0.182 4.182 11 C -0.007 4.007 12 N -0.358 5.358 13 C 0.323 3.677 14 O -0.390 6.390 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.012 4.012 26 C -0.180 4.180 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.233 0.767 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.142 -20.143 -6.142 31.290 hybrid contribution 1.628 -1.626 -2.087 3.106 sum -21.515 -21.769 -8.229 31.694 Atomic orbital electron populations 1.21513 0.79386 1.02143 1.02483 1.45795 1.07842 1.08462 1.77508 1.20049 0.89229 0.84042 0.77431 1.90890 1.69384 1.30412 1.45492 1.21599 0.94870 0.97779 1.06679 1.19936 0.82533 0.90576 0.77482 1.90883 1.54374 1.45288 1.45923 1.46078 1.06672 1.08883 1.76645 1.20959 0.95231 0.82528 0.96922 1.22311 1.02291 0.96856 0.96714 1.21464 0.84418 0.95442 0.99425 1.48145 1.10659 1.60593 1.16422 1.20336 0.84450 0.76573 0.86333 1.90692 1.83862 1.45570 1.18874 1.23556 0.97007 1.05373 1.04197 1.85434 1.01552 1.75185 1.21276 1.22858 0.96557 1.45439 1.03532 0.90949 1.24988 0.98386 0.94533 0.95636 1.70018 1.25862 1.36283 1.18069 0.86174 0.80730 0.78606 0.80016 1.20263 1.20759 1.19721 1.21641 1.03182 0.92487 0.83878 1.22213 0.95682 0.98197 1.01956 0.92220 0.90656 0.92205 0.76663 0.86080 0.86040 0.76764 0.89152 0.91235 0.90314 0.88552 0.91545 0.89291 0.89238 0.92178 0.91129 0.88621 0.90014 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.70 59.85 0.64 1.05 16 2 N -0.74 -3.50 5.71 -67.08 -0.38 -3.88 16 3 C 0.51 4.29 7.82 -10.98 -0.09 4.20 16 4 O -0.49 -7.03 14.18 -18.96 -0.27 -7.30 16 5 C -0.17 -0.81 6.19 -29.03 -0.18 -0.99 16 6 C 0.51 4.73 7.79 -10.99 -0.09 4.64 16 7 O -0.49 -7.30 13.84 -18.96 -0.26 -7.57 16 8 N -0.73 -5.09 5.08 -53.75 -0.27 -5.36 16 9 C 0.15 1.33 2.41 -67.88 -0.16 1.16 16 10 C -0.14 -1.52 5.66 -26.59 -0.15 -1.67 16 11 C 0.12 1.48 6.43 -3.71 -0.02 1.46 16 12 N -0.62 -8.72 2.97 -172.77 -0.51 -9.23 16 13 C 0.54 10.13 7.72 -10.98 -0.08 10.04 16 14 O -0.52 -11.86 15.27 5.56 0.08 -11.78 16 15 C -0.15 -3.01 4.50 36.00 0.16 -2.85 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 21 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 26 C -0.14 -1.11 5.55 -26.61 -0.15 -1.25 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.40 0.41 8.83 -40.82 -0.36 0.04 16 31 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.40 1.52 8.60 -40.82 -0.35 1.17 16 34 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.42 7.00 -51.93 -0.36 1.06 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.61 7.69 -51.91 -0.40 1.21 16 40 H 0.09 1.65 7.94 -51.92 -0.41 1.24 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.98 5.93 -51.92 -0.31 0.67 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -41.30 387.09 -9.01 -50.31 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.78 Total: -2.15 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 0.06 Total: 4.13 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.44 Total: -43.77 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.45 Total: -26.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -41.30 -9.01 -50.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293748001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.987 kcal (2) G-P(sol) polarization free energy of solvation -41.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds