Wall clock time and date at job start Wed Apr 1 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99865 * 2 1 4 4 O 1.21278 * 120.00151 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00075 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.46877 * 179.97438 * 5 3 2 7 7 O 1.21286 * 120.00156 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99787 * 179.97438 * 6 5 3 9 9 C 1.46498 * 119.99920 * 180.02562 * 8 6 5 10 10 C 1.53070 * 109.44278 * 84.79819 * 9 8 6 11 11 C 1.53195 * 109.29524 * 181.23594 * 10 9 8 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46922 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99932 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46948 * 90.00349 * 21 19 17 23 23 H 1.48500 * 109.47056 * 210.00208 * 21 19 17 24 24 H 1.48492 * 109.47222 * 330.00387 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.46033 * 205.00305 * 9 8 6 27 27 H 1.08999 * 109.47341 * 60.00647 * 1 2 3 28 28 H 1.09000 * 109.46706 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47510 * 299.99931 * 1 2 3 30 30 H 0.97003 * 120.00248 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46921 * 59.99636 * 5 3 2 32 32 H 1.09002 * 109.46661 * 299.99533 * 5 3 2 33 33 H 0.97004 * 120.00060 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.45852 * 324.97047 * 9 8 6 35 35 H 1.08997 * 109.38860 * 61.35781 * 10 9 8 36 36 H 1.09003 * 109.62046 * 301.25123 * 10 9 8 37 37 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 38 38 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 39 39 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 40 40 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 41 41 H 0.96997 * 119.99912 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 43 43 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 44 44 H 1.09002 * 109.49876 * 58.67575 * 26 9 8 45 45 H 1.09005 * 109.52615 * 298.59825 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1481 2.5882 -0.0011 7 8 3.3599 3.5100 -0.0015 8 7 5.4732 2.8345 -0.0011 9 6 5.9614 4.2157 -0.0011 10 6 6.0079 4.7396 1.4364 11 6 6.4894 6.1939 1.4299 12 7 7.7716 6.2673 0.7162 13 6 8.8485 6.8342 1.2955 14 8 8.7647 7.2894 2.4164 15 6 10.1568 6.9013 0.5507 16 16 11.3998 7.7125 1.5866 17 6 12.7863 7.6573 0.5007 18 1 12.6889 7.2093 -0.4771 19 6 14.0037 8.1897 0.9020 20 7 14.1226 8.7354 2.0940 21 14 15.4738 8.1307 -0.2489 22 1 15.4961 9.3566 -1.0867 23 1 16.7241 8.0534 0.5486 24 1 15.3700 6.9352 -1.1237 25 6 7.8577 5.7106 -0.6408 26 6 7.3643 4.2606 -0.6110 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 4.0089 0.6536 -0.8908 32 1 4.0095 0.6533 0.8892 33 1 6.1036 2.0972 -0.0012 34 1 5.2889 4.8386 -0.5910 35 1 6.6973 4.1307 2.0213 36 1 5.0123 4.6880 1.8772 37 1 6.6215 6.5397 2.4551 38 1 5.7539 6.8201 0.9250 39 1 10.4890 5.8919 0.3081 40 1 10.0225 7.4705 -0.3692 41 1 14.9734 9.1071 2.3746 42 1 7.2330 6.2954 -1.3160 43 1 8.8923 5.7398 -0.9827 44 1 7.3322 3.8664 -1.6267 45 1 8.0432 3.6575 -0.0081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293748001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:10 Heat of formation + Delta-G solvation = -138.098946 kcal Electronic energy + Delta-G solvation = -26957.010893 eV Core-core repulsion = 22906.409507 eV Total energy + Delta-G solvation = -4050.601386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54183 -40.99977 -39.82354 -38.28688 -35.74729 -35.39683 -34.56565 -33.19788 -32.42554 -31.33082 -30.20538 -27.67630 -27.38875 -25.66388 -24.33458 -22.48910 -21.82420 -21.19143 -20.42010 -19.56177 -18.44661 -18.28657 -17.85911 -17.03256 -16.89816 -16.84606 -16.75094 -16.63831 -16.33143 -15.88699 -15.65118 -15.14377 -14.93681 -14.62673 -14.50880 -14.43658 -14.36638 -14.17745 -13.91401 -13.45393 -13.36745 -13.14703 -13.06312 -12.95107 -12.87334 -12.82935 -12.58793 -12.28366 -11.96072 -11.74081 -11.69445 -11.19483 -11.12543 -10.88516 -10.50221 -10.23709 -10.07285 -10.02773 -9.73922 -8.65738 -8.32632 -6.11154 1.26847 1.44309 1.47600 1.56351 1.57847 1.66262 1.77646 1.92181 2.08938 2.29168 2.59488 3.01754 3.26335 3.55726 3.62828 3.68952 3.90298 4.02577 4.04352 4.11917 4.26409 4.28315 4.40057 4.42749 4.43580 4.46994 4.51080 4.61321 4.63547 4.74280 4.78060 4.81741 4.96711 4.97329 5.03875 5.24196 5.43817 5.49136 5.53156 5.54335 6.21637 6.28032 6.60325 6.67076 7.08607 7.13589 7.32858 7.45998 8.76586 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032912 B = 0.001728 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.541632 B =16197.487110 C =16685.001147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.724 5.724 3 C 0.498 3.502 4 O -0.562 6.562 5 C -0.153 4.153 6 C 0.504 3.496 7 O -0.556 6.556 8 N -0.712 5.712 9 C 0.152 3.848 10 C -0.131 4.131 11 C 0.115 3.885 12 N -0.606 5.606 13 C 0.533 3.467 14 O -0.569 6.569 15 C -0.122 4.122 16 S -0.157 6.157 17 C -0.544 4.544 18 H 0.086 0.914 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.255 1.255 25 C 0.100 3.900 26 C -0.129 4.129 27 H 0.043 0.957 28 H 0.113 0.887 29 H 0.041 0.959 30 H 0.422 0.578 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.419 0.581 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.270 0.730 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.341 -26.043 -10.796 35.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.284 3.716 4 O -0.439 6.439 5 C -0.195 4.195 6 C 0.290 3.710 7 O -0.432 6.432 8 N -0.366 5.366 9 C 0.047 3.953 10 C -0.170 4.170 11 C -0.008 4.008 12 N -0.341 5.341 13 C 0.321 3.679 14 O -0.447 6.447 15 C -0.273 4.273 16 S 0.071 5.929 17 C -0.692 4.692 18 H 0.104 0.896 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.179 1.179 25 C -0.022 4.022 26 C -0.167 4.167 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.183 0.817 32 H 0.178 0.822 33 H 0.256 0.744 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.411 -23.899 -9.039 33.987 hybrid contribution 1.227 -0.580 -1.220 1.825 sum -21.183 -24.478 -10.259 33.958 Atomic orbital electron populations 1.21592 0.79483 1.04053 1.00857 1.45693 1.07967 1.08594 1.75560 1.20774 0.90866 0.83798 0.76208 1.90873 1.70978 1.33006 1.49006 1.21649 0.92050 0.95281 1.10492 1.20736 0.82463 0.91862 0.75986 1.90876 1.56005 1.47545 1.48803 1.45878 1.06576 1.08646 1.75489 1.20775 0.95864 0.83533 0.95164 1.22179 1.01356 0.95226 0.98277 1.21513 0.83943 0.97288 0.98096 1.48124 1.09487 1.58792 1.17679 1.20207 0.85207 0.76812 0.85696 1.90677 1.84695 1.48275 1.21095 1.23369 0.95121 1.05843 1.02974 1.85670 1.04988 1.77119 1.25162 1.23203 0.96733 1.45434 1.03798 0.89640 1.26135 1.01874 0.93788 0.97357 1.70193 1.26785 1.37501 1.20418 0.84948 0.76055 0.79322 0.77615 1.19478 1.20462 1.17876 1.22033 1.04255 0.94320 0.81595 1.22138 0.94351 0.96415 1.03815 0.93829 0.86868 0.94012 0.74079 0.81716 0.82182 0.74357 0.90831 0.91159 0.91442 0.91097 0.90662 0.86836 0.87310 0.92066 0.89437 0.87969 0.86866 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.70 127.77 1.37 2.07 16 2 N -0.72 -5.24 5.71 -484.53 -2.77 -8.01 16 3 C 0.50 7.76 7.82 87.66 0.69 8.44 16 4 O -0.56 -16.75 14.18 20.42 0.29 -16.46 16 5 C -0.15 -0.95 6.19 29.10 0.18 -0.77 16 6 C 0.50 8.40 7.79 87.66 0.68 9.09 16 7 O -0.56 -16.77 13.84 20.39 0.28 -16.49 16 8 N -0.71 -7.79 5.08 -442.35 -2.25 -10.03 16 9 C 0.15 2.40 2.41 45.03 0.11 2.51 16 10 C -0.13 -2.71 5.66 30.68 0.17 -2.53 16 11 C 0.11 2.96 6.43 86.36 0.56 3.52 16 12 N -0.61 -16.40 2.97 -818.91 -2.44 -18.83 16 13 C 0.53 20.19 7.72 87.66 0.68 20.87 16 14 O -0.57 -27.24 15.27 -3.01 -0.05 -27.28 16 15 C -0.12 -4.76 4.50 71.24 0.32 -4.44 16 16 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 17 C -0.54 -30.57 9.50 67.95 0.65 -29.93 16 18 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16 21 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 C 0.10 1.76 6.34 86.36 0.55 2.30 16 26 C -0.13 -1.52 5.55 30.67 0.17 -1.35 16 27 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.42 -0.73 8.83 -92.71 -0.82 -1.55 16 31 H 0.17 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.42 1.28 8.60 -92.71 -0.80 0.49 16 34 H 0.07 1.49 7.58 -2.38 -0.02 1.47 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 3.86 7.69 -2.39 -0.02 3.84 16 40 H 0.11 3.82 7.94 -2.40 -0.02 3.80 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 1.71 5.93 -2.38 -0.01 1.70 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.94 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -98.74 387.09 0.22 -98.52 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -0.59 Total: 8.14 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.58 Total: 10.97 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -7.16 Total: -92.48 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: 0.53 Total: -60.22 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -98.74 0.22 -98.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293748001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.577 kcal (2) G-P(sol) polarization free energy of solvation -98.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds