Wall clock time and date at job start Wed Apr 1 2020 01:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.53000 * 109.47637 * 269.72749 * 3 2 1 5 5 C 1.52994 * 109.47472 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47408 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00426 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99666 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00280 * 179.97438 * 7 6 5 10 10 H 1.09000 * 110.21402 * 320.47927 * 9 7 6 11 11 C 1.54480 * 110.24290 * 82.49906 * 9 7 6 12 12 C 1.54624 * 101.76498 * 144.41873 * 11 9 7 13 13 C 1.51285 * 104.19579 * 335.19997 * 12 11 9 14 14 O 1.21280 * 124.94421 * 196.27439 * 13 12 11 15 15 N 1.34421 * 110.11561 * 16.25378 * 13 12 11 16 16 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 17 17 O 1.21283 * 119.99649 * 180.02562 * 16 2 1 18 18 C 1.50694 * 119.99988 * 0.02562 * 16 2 1 19 19 S 1.81005 * 109.47244 * 179.97438 * 18 16 2 20 20 C 1.76192 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99747 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00171 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47362 * 89.99969 * 24 22 20 26 26 H 1.48505 * 109.46829 * 209.99955 * 24 22 20 27 27 H 1.48498 * 109.47111 * 329.99341 * 24 22 20 28 28 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 29 29 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 30 30 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 31 31 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 32 32 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 33 33 H 1.09002 * 109.46747 * 300.00171 * 4 3 2 34 34 H 1.08996 * 109.47074 * 59.99445 * 4 3 2 35 35 H 1.08993 * 109.47409 * 300.00238 * 5 4 3 36 36 H 1.09008 * 109.47165 * 60.00188 * 5 4 3 37 37 H 0.97004 * 119.99671 * 359.97438 * 6 5 4 38 38 H 1.09002 * 110.96472 * 262.53732 * 11 9 7 39 39 H 1.08992 * 110.97180 * 26.29666 * 11 9 7 40 40 H 1.09001 * 110.48951 * 216.52302 * 12 11 9 41 41 H 1.09000 * 110.60388 * 93.93090 * 12 11 9 42 42 H 0.96994 * 124.35010 * 180.43106 * 15 13 12 43 43 H 1.08998 * 109.47224 * 299.99701 * 18 16 2 44 44 H 1.09002 * 109.47054 * 60.00213 * 18 16 2 45 45 H 0.97000 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4585 1.7069 -1.4424 5 6 3.2231 3.0322 -1.4424 6 7 3.4735 3.4516 -2.8236 7 6 4.1373 4.5984 -3.0698 8 8 4.5276 5.2830 -2.1479 9 6 4.3954 5.0295 -4.4906 10 1 4.6530 4.1668 -5.1051 11 6 3.1536 5.7462 -5.0657 12 6 3.8006 6.8285 -5.9607 13 6 5.1700 7.0416 -5.3541 14 8 5.8881 7.9932 -5.5769 15 7 5.4750 6.0229 -4.5318 16 6 2.1388 -1.1673 0.0056 17 8 3.3516 -1.1673 0.0060 18 6 1.3852 -2.4723 0.0112 19 16 2.5613 -3.8482 0.0171 20 6 1.4412 -5.2082 0.0238 21 1 0.3759 -5.0304 0.0229 22 6 1.9279 -6.5080 0.0301 23 7 3.2262 -6.7247 0.0307 24 14 0.7403 -7.9500 0.0365 25 1 0.4262 -8.3387 -1.3619 26 1 1.3613 -9.0996 0.7422 27 1 -0.5106 -7.5580 0.7342 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3634 -0.8924 -0.5096 31 1 1.6064 2.0295 0.5096 32 1 3.1477 1.1395 0.5181 33 1 3.0497 0.9460 -1.9520 34 1 1.5083 1.8361 -1.9605 35 1 2.6316 3.7928 -0.9329 36 1 4.1734 2.9034 -0.9242 37 1 3.1623 2.9034 -3.5609 38 1 2.5475 5.0610 -5.6584 39 1 2.5620 6.1999 -4.2707 40 1 3.2199 7.7503 -5.9249 41 1 3.8893 6.4742 -6.9877 42 1 6.3020 5.9535 -4.0298 43 1 0.7583 -2.5260 0.9012 44 1 0.7589 -2.5340 -0.8788 45 1 3.5663 -7.6331 0.0355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293995716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:30 Heat of formation + Delta-G solvation = -141.989701 kcal Electronic energy + Delta-G solvation = -26245.008872 eV Core-core repulsion = 22194.238770 eV Total energy + Delta-G solvation = -4050.770102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82927 -40.85134 -40.18308 -37.52160 -37.10053 -36.05706 -34.57555 -33.25681 -32.25056 -30.80335 -29.38465 -27.77257 -27.67756 -25.98578 -23.67342 -22.83458 -21.73629 -21.45207 -20.55763 -19.51059 -18.90829 -18.29401 -18.03817 -17.40803 -16.95704 -16.87076 -16.76767 -16.58084 -16.56863 -15.88961 -15.58367 -15.37877 -14.76450 -14.72769 -14.54656 -14.50904 -14.25152 -14.12408 -13.61801 -13.53881 -13.43142 -13.24700 -13.15642 -12.98963 -12.89321 -12.85366 -12.66301 -12.56391 -12.08292 -11.83854 -11.68212 -11.25824 -11.13305 -11.03421 -10.86362 -10.24830 -10.24103 -10.15235 -9.68017 -8.66134 -8.33767 -6.11912 1.27555 1.40985 1.43361 1.45662 1.48191 1.57730 1.59744 1.91888 2.18760 2.28953 2.45877 3.00604 3.28386 3.30343 3.40031 3.70484 3.72928 3.95856 4.01902 4.02698 4.09743 4.18102 4.25707 4.40024 4.45504 4.49644 4.51785 4.61414 4.69944 4.82327 4.83329 4.97597 4.99688 5.05388 5.09629 5.16627 5.35887 5.42707 5.61837 5.65077 5.90396 6.20491 6.29786 6.45798 7.07725 7.08081 7.16031 7.18029 8.75304 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.001566 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.872066 B =17876.074552 C =18265.745986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.115 3.885 4 C -0.132 4.132 5 C 0.127 3.873 6 N -0.708 5.708 7 C 0.503 3.497 8 O -0.580 6.580 9 C 0.113 3.887 10 H 0.143 0.857 11 C -0.110 4.110 12 C -0.145 4.145 13 C 0.508 3.492 14 O -0.589 6.589 15 N -0.715 5.715 16 C 0.529 3.471 17 O -0.565 6.565 18 C -0.124 4.124 19 S -0.156 6.156 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.257 1.257 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.420 0.580 38 H 0.145 0.855 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.409 0.591 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 23.278 -11.237 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.008 4.008 4 C -0.171 4.171 5 C 0.003 3.997 6 N -0.361 5.361 7 C 0.289 3.711 8 O -0.459 6.459 9 C 0.005 3.995 10 H 0.161 0.839 11 C -0.148 4.148 12 C -0.185 4.185 13 C 0.297 3.703 14 O -0.470 6.470 15 N -0.368 5.368 16 C 0.317 3.683 17 O -0.444 6.444 18 C -0.275 4.275 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.181 1.181 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.258 0.742 38 H 0.163 0.837 39 H 0.100 0.900 40 H 0.131 0.869 41 H 0.154 0.846 42 H 0.247 0.753 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.600 24.146 -10.740 27.791 hybrid contribution -0.885 -1.346 0.427 1.667 sum -9.486 22.799 -10.313 26.761 Atomic orbital electron populations 1.22120 0.76705 1.05016 1.03328 1.47840 1.08560 1.04557 1.73390 1.21444 0.97779 0.84589 0.96973 1.21994 1.01798 0.95440 0.97819 1.21162 0.99689 0.95851 0.83012 1.45827 1.57347 1.23242 1.09638 1.21185 0.77407 0.80744 0.91797 1.90758 1.52501 1.55089 1.47570 1.21932 0.90070 0.94533 0.92994 0.83919 1.22729 0.94468 0.97879 0.99683 1.22430 0.91327 1.02550 1.02195 1.21746 0.89991 0.80267 0.78303 1.90741 1.58223 1.33124 1.64911 1.46188 1.20734 1.23244 1.46676 1.20153 0.87264 0.85610 0.75321 1.90688 1.15732 1.87513 1.50428 1.23385 1.02683 0.95066 1.06383 1.85598 1.12776 0.97437 1.97031 1.23197 0.94658 0.92639 1.58798 0.89832 1.26120 0.97540 1.01698 0.93757 1.70185 1.14138 1.22431 1.48053 0.84964 0.77927 0.76342 0.78816 1.19219 1.20518 1.18121 0.91435 0.87516 0.90747 0.86797 0.92349 0.92776 0.88100 0.90341 0.93382 0.74192 0.83651 0.89974 0.86885 0.84566 0.75315 0.87723 0.87149 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.24 127.77 1.31 2.22 16 2 N -0.61 -13.47 2.87 -846.78 -2.43 -15.90 16 3 C 0.12 2.02 5.41 86.38 0.47 2.48 16 4 C -0.13 -1.74 5.65 30.59 0.17 -1.57 16 5 C 0.13 1.70 5.67 86.38 0.49 2.19 16 6 N -0.71 -6.77 5.56 -463.06 -2.57 -9.34 16 7 C 0.50 6.98 7.01 87.66 0.61 7.59 16 8 O -0.58 -14.25 16.58 -3.04 -0.05 -14.30 16 9 C 0.11 0.82 3.92 44.70 0.18 1.00 16 10 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 11 C -0.11 -0.21 6.67 31.65 0.21 0.00 16 12 C -0.15 -0.86 6.86 30.59 0.21 -0.65 16 13 C 0.51 8.91 8.43 87.90 0.74 9.65 16 14 O -0.59 -16.64 18.03 -3.03 -0.05 -16.69 16 15 N -0.72 -10.54 5.47 -442.96 -2.42 -12.96 16 16 C 0.53 18.34 7.69 87.65 0.67 19.01 16 17 O -0.57 -25.02 15.44 -3.04 -0.05 -25.07 16 18 C -0.12 -4.66 4.71 71.23 0.34 -4.33 16 19 S -0.16 -8.42 20.57 -56.49 -1.16 -9.59 16 20 C -0.55 -30.31 9.50 67.95 0.65 -29.66 16 21 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 24 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.11 0.63 8.07 -2.39 -0.02 0.61 16 30 H 0.07 1.04 6.44 -2.38 -0.02 1.02 16 31 H 0.11 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.06 1.40 7.42 -2.39 -0.02 1.38 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.42 1.26 8.47 -92.71 -0.79 0.47 16 38 H 0.15 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.08 0.34 7.90 -2.39 -0.02 0.32 16 40 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.41 6.95 8.96 -92.71 -0.83 6.12 16 43 H 0.10 3.59 8.11 -2.40 -0.02 3.57 16 44 H 0.11 3.66 7.40 -2.39 -0.02 3.64 16 45 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -93.95 396.13 -0.51 -94.46 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -0.59 Total: 10.65 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.51 Total: 9.15 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -7.14 Total: -93.06 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.15 Total: -56.06 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.59 kcal Total: -93.95 -0.51 -94.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293995716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.529 kcal (2) G-P(sol) polarization free energy of solvation -93.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds