Wall clock time and date at job start Wed Apr 1 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00243 * 2 1 4 4 C 1.52999 * 109.47446 * 270.27723 * 3 2 1 5 5 H 1.08998 * 109.49518 * 55.06783 * 4 3 2 6 6 C 1.53042 * 109.49955 * 175.16096 * 4 3 2 7 7 C 1.53037 * 109.53786 * 181.31813 * 6 4 3 8 8 C 1.53191 * 109.31447 * 298.63583 * 7 6 4 9 9 N 1.46924 * 108.77246 * 54.63363 * 8 7 6 10 10 C 1.34782 * 120.62605 * 126.37446 * 9 8 7 11 11 O 1.21348 * 119.99868 * 173.08777 * 10 9 8 12 12 C 1.49447 * 119.99940 * 353.08708 * 10 9 8 13 13 N 1.34776 * 119.99700 * 173.33776 * 12 10 9 14 14 O 1.21348 * 120.00312 * 353.33653 * 12 10 9 15 15 C 1.46919 * 118.74386 * 306.39068 * 9 8 7 16 16 C 1.34778 * 119.99764 * 180.28094 * 2 1 3 17 17 O 1.21277 * 119.99928 * 179.72315 * 16 2 1 18 18 C 1.50702 * 119.99804 * 359.71940 * 16 2 1 19 19 S 1.80996 * 109.47095 * 179.97438 * 18 16 2 20 20 C 1.76200 * 100.00149 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00066 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00089 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99820 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47034 * 60.00364 * 24 22 20 26 26 H 1.48496 * 109.46682 * 180.02562 * 24 22 20 27 27 H 1.48491 * 109.47098 * 300.00369 * 24 22 20 28 28 H 1.09000 * 109.47094 * 269.72758 * 1 2 3 29 29 H 1.08999 * 109.46918 * 29.71450 * 1 2 3 30 30 H 1.08993 * 109.47760 * 149.72149 * 1 2 3 31 31 H 1.09010 * 109.47364 * 30.28243 * 3 2 1 32 32 H 1.09003 * 109.47006 * 150.27550 * 3 2 1 33 33 H 1.09002 * 109.46056 * 301.33978 * 6 4 3 34 34 H 1.09004 * 109.45947 * 61.29937 * 6 4 3 35 35 H 1.09000 * 109.49830 * 178.68267 * 7 6 4 36 36 H 1.09000 * 109.52289 * 58.60505 * 7 6 4 37 37 H 1.09001 * 109.58301 * 294.84790 * 8 7 6 38 38 H 1.08997 * 109.70654 * 174.49432 * 8 7 6 39 39 H 0.97000 * 120.00343 * 0.02562 * 13 12 10 40 40 H 0.97005 * 119.99829 * 179.97438 * 13 12 10 41 41 H 1.09004 * 109.58814 * 293.82587 * 15 9 8 42 42 H 1.08997 * 109.70633 * 173.46634 * 15 9 8 43 43 H 1.08999 * 109.47499 * 300.00062 * 18 16 2 44 44 H 1.08999 * 109.47101 * 60.00271 * 18 16 2 45 45 H 0.97002 * 120.00224 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4465 1.7138 -1.4424 5 1 1.4981 1.7610 -1.9775 6 6 3.1040 3.0959 -1.4442 7 6 3.3235 3.5563 -2.8871 8 6 4.2614 2.5738 -3.5954 9 7 3.7073 1.2187 -3.4721 10 6 3.5076 0.4564 -4.5655 11 8 3.1688 -0.7025 -4.4437 12 6 3.7034 1.0384 -5.9280 13 7 3.6357 0.2453 -7.0156 14 8 3.9232 2.2250 -6.0552 15 6 3.3745 0.7104 -2.1343 16 6 2.1388 -1.1672 -0.0057 17 8 3.3516 -1.1672 -0.0108 18 6 1.3852 -2.4723 -0.0057 19 16 2.5613 -3.8481 -0.0149 20 6 1.4412 -5.2082 -0.0141 21 1 0.3759 -5.0305 -0.0094 22 6 1.9279 -6.5081 -0.0206 23 7 3.2261 -6.7247 -0.0268 24 14 0.7403 -7.9500 -0.0190 25 1 -0.1208 -7.8834 -1.2270 26 1 1.5064 -9.2221 -0.0262 27 1 -0.1086 -7.8908 1.1978 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 0.8925 -0.5094 30 1 -0.3634 -0.8874 -0.5181 31 1 1.6107 2.0271 0.5182 32 1 3.1521 1.1370 0.5096 33 1 2.4565 3.8067 -0.9307 34 1 4.0637 3.0421 -0.9302 35 1 3.7703 4.5505 -2.8877 36 1 2.3672 3.5870 -3.4092 37 1 5.2466 2.6094 -3.1303 38 1 4.3450 2.8400 -4.6490 39 1 3.4595 -0.7032 -6.9141 40 1 3.7624 0.6231 -7.9001 41 1 4.2874 0.5941 -1.5501 42 1 2.8714 -0.2525 -2.2217 43 1 0.7623 -2.5322 0.8867 44 1 0.7549 -2.5278 -0.8932 45 1 3.5663 -7.6331 -0.0309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294962438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:06 Heat of formation + Delta-G solvation = -88.515377 kcal Electronic energy + Delta-G solvation = -28603.563493 eV Core-core repulsion = 24555.112212 eV Total energy + Delta-G solvation = -4048.451281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10016 -39.78256 -38.63646 -37.68658 -35.47800 -34.19375 -33.10957 -32.38609 -31.77619 -29.29692 -27.24374 -26.70740 -25.60464 -25.19520 -23.81861 -22.39837 -20.87167 -19.77636 -19.16460 -18.06321 -17.61108 -17.36382 -16.61785 -16.55351 -15.91459 -15.79908 -15.41617 -15.36870 -15.01958 -14.76732 -14.47499 -14.18363 -13.95927 -13.61066 -13.49428 -13.06615 -13.03410 -12.86353 -12.65774 -12.52075 -12.28233 -12.02616 -11.92972 -11.53216 -11.24337 -11.02000 -11.00883 -10.97775 -10.79332 -10.73726 -10.64156 -10.21120 -9.77442 -9.33032 -9.31473 -9.01721 -8.77329 -8.49862 -8.17679 -6.44020 -6.17207 -3.86874 1.22664 2.30502 2.97063 3.03837 3.07709 3.26139 3.28465 3.31725 3.51206 3.65171 4.22090 4.24455 4.58655 4.60262 4.72431 4.83582 5.00479 5.12698 5.15504 5.17742 5.29938 5.40012 5.42752 5.48777 5.52005 5.64156 5.66275 5.69066 5.72592 5.76421 5.87683 5.91185 5.96870 6.08698 6.18148 6.19522 6.26643 6.49022 6.65321 6.66613 7.15267 7.53438 7.60285 7.63300 7.84654 8.39082 8.57636 9.27856 10.90180 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.003153 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.210343 B = 8877.653577 C =10452.914771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.124 3.876 4 C -0.116 4.116 5 H 0.073 0.927 6 C -0.116 4.116 7 C -0.126 4.126 8 C 0.046 3.954 9 N -0.578 5.578 10 C 0.497 3.503 11 O -0.507 6.507 12 C 0.520 3.480 13 N -0.818 5.818 14 O -0.517 6.517 15 C 0.118 3.882 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.151 4.151 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.154 0.846 39 H 0.417 0.583 40 H 0.410 0.590 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 22.258 -8.367 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.362 5.362 3 C 0.000 4.000 4 C -0.137 4.137 5 H 0.092 0.908 6 C -0.154 4.154 7 C -0.164 4.164 8 C -0.074 4.074 9 N -0.311 5.311 10 C 0.279 3.721 11 O -0.381 6.381 12 C 0.300 3.700 13 N -0.383 5.383 14 O -0.395 6.395 15 C -0.003 4.003 16 C 0.321 3.679 17 O -0.386 6.386 18 C -0.301 4.301 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.248 0.752 40 H 0.243 0.757 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.070 22.226 -8.184 23.709 hybrid contribution -2.363 -1.190 -0.224 2.656 sum -3.433 21.035 -8.408 22.912 Atomic orbital electron populations 1.21752 0.79711 1.03067 1.01717 1.47893 1.06847 1.05664 1.75844 1.21401 0.98331 0.85040 0.95181 1.21962 0.99356 0.95320 0.97048 0.90810 1.21570 1.01199 0.95534 0.97075 1.21807 1.00337 0.98730 0.95567 1.23222 0.95942 0.80063 1.08220 1.48002 1.60844 1.16158 1.06118 1.19927 0.80217 0.86376 0.85617 1.90873 1.45412 1.15606 1.86253 1.20339 0.76456 0.86319 0.86839 1.43593 1.72363 1.13929 1.08447 1.90351 1.48481 1.15367 1.85292 1.21906 0.99895 0.97950 0.80565 1.20334 0.88008 0.84576 0.74971 1.90687 1.13586 1.86764 1.47563 1.23555 1.04615 0.97369 1.04590 1.85372 1.07913 0.93206 1.96665 1.22825 0.94286 0.92300 1.58921 0.91069 1.24974 0.95633 0.98313 0.94587 1.70008 1.11731 1.21682 1.46872 0.86243 0.80234 0.80368 0.78771 1.19949 1.20835 1.19977 0.92667 0.91543 0.90694 0.90336 0.89458 0.91518 0.91333 0.90620 0.91716 0.91792 0.83036 0.75163 0.75749 0.89956 0.88443 0.89391 0.89341 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.24 59.85 0.61 1.46 16 2 N -0.63 -8.63 2.77 -181.58 -0.50 -9.14 16 3 C 0.12 1.40 5.00 -4.05 -0.02 1.38 16 4 C -0.12 -1.28 2.55 -90.50 -0.23 -1.51 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.12 -0.98 5.17 -26.69 -0.14 -1.12 16 7 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 8 C 0.05 0.49 6.27 -3.71 -0.02 0.47 16 9 N -0.58 -7.70 2.97 -173.28 -0.51 -8.21 16 10 C 0.50 7.12 7.74 -11.58 -0.09 7.03 16 11 O -0.51 -8.99 15.95 5.50 0.09 -8.90 16 12 C 0.52 5.90 8.05 -11.59 -0.09 5.81 16 13 N -0.82 -6.43 8.87 30.90 0.27 -6.15 16 14 O -0.52 -6.24 13.94 5.50 0.08 -6.17 16 15 C 0.12 1.73 4.30 -3.71 -0.02 1.71 16 16 C 0.53 10.04 6.35 -10.98 -0.07 9.97 16 17 O -0.51 -11.24 13.57 5.56 0.08 -11.16 16 18 C -0.15 -3.13 4.71 36.01 0.17 -2.96 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.49 9.50 30.94 0.29 -15.19 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 23 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 24 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.53 8.07 -51.93 -0.42 0.12 16 30 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 31 H 0.08 0.66 8.08 -51.92 -0.42 0.24 16 32 H 0.09 1.12 7.42 -51.93 -0.39 0.73 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.15 1.68 3.78 -56.75 -0.21 1.46 16 39 H 0.42 3.12 8.32 -40.82 -0.34 2.78 16 40 H 0.41 2.12 8.93 -40.82 -0.36 1.75 16 41 H 0.08 1.31 7.73 -51.93 -0.40 0.91 16 42 H 0.10 1.80 5.47 -51.93 -0.28 1.51 16 43 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 44 H 0.09 1.75 7.39 -51.92 -0.38 1.37 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -36.85 377.03 -7.66 -44.50 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.47 Total: 4.65 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 0.14 Total: 7.84 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.01 Total: -49.28 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: 0.24 Total: -26.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.85 -7.66 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294962438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.011 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds