Wall clock time and date at job start Wed Apr 1 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00113 * 2 1 4 4 O 1.21278 * 120.00205 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99845 * 359.97438 * 3 2 1 6 6 S 1.81000 * 109.47055 * 180.02562 * 5 3 2 7 7 C 1.76196 * 99.99925 * 180.02562 * 6 5 3 8 8 H 1.08006 * 119.99926 * 359.97438 * 7 6 5 9 9 C 1.38799 * 120.00384 * 180.02562 * 7 6 5 10 10 N 1.31634 * 119.99289 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00616 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47166 * 89.99993 * 11 9 7 13 13 H 1.48503 * 109.47590 * 210.00211 * 11 9 7 14 14 H 1.48503 * 109.47178 * 330.00252 * 11 9 7 15 15 C 1.46498 * 120.00251 * 179.97438 * 2 1 3 16 16 H 1.09000 * 109.50133 * 179.97438 * 15 2 1 17 17 C 1.53039 * 109.49688 * 299.99975 * 15 2 1 18 18 C 1.53042 * 109.54061 * 181.31230 * 17 15 2 19 19 C 1.53190 * 109.31400 * 298.63619 * 18 17 15 20 20 N 1.46934 * 108.77492 * 54.63338 * 19 18 17 21 21 C 1.34777 * 120.63116 * 126.36473 * 20 19 18 22 22 O 1.21274 * 120.00135 * 180.27770 * 21 20 19 23 23 C 1.50706 * 119.99766 * 0.02562 * 21 20 19 24 24 C 1.50699 * 109.46817 * 179.97438 * 23 21 20 25 25 N 1.34779 * 120.00037 * 180.02562 * 24 23 21 26 26 O 1.21282 * 120.00041 * 359.97438 * 24 23 21 27 27 C 1.46921 * 118.73734 * 306.64447 * 20 19 18 28 28 H 1.09002 * 109.47201 * 270.00387 * 1 2 3 29 29 H 1.08996 * 109.47412 * 30.00333 * 1 2 3 30 30 H 1.09000 * 109.47290 * 149.99931 * 1 2 3 31 31 H 1.08998 * 109.47016 * 300.00580 * 5 3 2 32 32 H 1.08999 * 109.46777 * 60.00209 * 5 3 2 33 33 H 0.97003 * 119.99743 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.46040 * 61.29266 * 17 15 2 35 35 H 1.09001 * 109.46438 * 301.33583 * 17 15 2 36 36 H 1.08998 * 109.50243 * 178.68185 * 18 17 15 37 37 H 1.09006 * 109.51971 * 58.60642 * 18 17 15 38 38 H 1.08990 * 109.58855 * 294.84590 * 19 18 17 39 39 H 1.09002 * 109.58388 * 174.41796 * 19 18 17 40 40 H 1.09000 * 109.47161 * 299.99737 * 23 21 20 41 41 H 1.09001 * 109.46740 * 59.99879 * 23 21 20 42 42 H 0.96996 * 119.99844 * 359.97438 * 25 24 23 43 43 H 0.96997 * 119.99871 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.58730 * 173.14190 * 27 20 19 45 45 H 1.09004 * 109.58544 * 293.56710 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5615 3.8481 -0.0012 7 6 1.4415 5.2082 -0.0010 8 1 0.3761 5.0305 -0.0011 9 6 1.9281 6.5081 -0.0019 10 7 3.2265 6.7246 -0.0034 11 14 0.7407 7.9501 -0.0025 12 1 0.4264 8.3330 1.3975 13 1 1.3618 9.1026 -0.7034 14 1 -0.5102 7.5610 -0.7019 15 6 2.1975 -1.2687 0.0006 16 1 3.2692 -1.0700 0.0000 17 6 1.8282 -2.0711 1.2503 18 6 2.6175 -3.3822 1.2685 19 6 2.2496 -4.2123 0.0347 20 7 2.4653 -3.3947 -1.1669 21 6 3.2365 -3.8465 -2.1756 22 8 3.4109 -3.1601 -3.1600 23 6 3.8867 -5.2026 -2.0777 24 6 4.6878 -5.4668 -3.3265 25 7 5.3604 -6.6268 -3.4629 26 8 4.7265 -4.6360 -4.2093 27 6 1.8294 -2.0725 -1.2452 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7590 2.5298 -0.8908 32 1 0.7584 2.5302 0.8892 33 1 3.5667 7.6331 -0.0037 34 1 0.7605 -2.2902 1.2388 35 1 2.0698 -1.4895 2.1399 36 1 2.3716 -3.9425 2.1705 37 1 3.6856 -3.1645 1.2554 38 1 1.2021 -4.5079 0.0923 39 1 2.8802 -5.1003 -0.0095 40 1 4.5464 -5.2275 -1.2104 41 1 3.1175 -5.9675 -1.9713 42 1 5.3292 -7.2913 -2.7571 43 1 5.8763 -6.7966 -4.2665 44 1 2.1827 -1.5492 -2.1337 45 1 0.7468 -2.1901 -1.2941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295781821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:38 Heat of formation + Delta-G solvation = -98.806886 kcal Electronic energy + Delta-G solvation = -27752.250472 eV Core-core repulsion = 23703.352917 eV Total energy + Delta-G solvation = -4048.897554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89768 -39.84963 -38.87402 -37.31105 -35.24935 -33.99667 -32.78441 -32.40457 -31.62499 -30.32943 -28.44312 -26.81126 -25.70208 -25.46540 -23.33641 -22.04257 -20.80946 -19.26669 -19.15333 -17.93296 -17.65153 -17.62362 -16.74396 -16.42561 -16.20188 -15.96050 -15.63471 -15.32971 -14.78367 -14.68546 -14.54076 -14.14840 -14.01508 -13.81675 -13.51855 -13.34468 -13.14513 -13.05853 -12.89120 -12.54262 -12.39817 -12.30121 -11.93269 -11.68471 -11.44148 -11.20405 -11.04447 -11.00351 -10.86316 -10.73075 -10.39265 -9.99969 -9.78847 -9.69571 -9.35911 -9.06357 -9.04161 -8.44157 -8.19776 -6.47509 -6.19119 -3.89654 2.27503 2.38585 2.51415 2.95741 3.05920 3.23214 3.24234 3.29632 3.32896 3.62443 4.00597 4.22401 4.38053 4.48188 4.50058 4.52375 4.68722 4.73784 4.78036 4.92475 5.03355 5.05818 5.11265 5.15822 5.22080 5.37081 5.41808 5.46062 5.56325 5.65483 5.71301 5.73267 5.90054 5.98268 6.05483 6.13135 6.15215 6.43101 6.66156 6.91763 7.09572 7.51303 7.61833 7.90938 8.06913 8.37474 8.55786 9.25951 10.88317 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.002186 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.243055 B =12808.601697 C =13613.888015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.535 3.465 4 O -0.513 6.513 5 C -0.149 4.149 6 S -0.062 6.062 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.129 3.871 16 H 0.105 0.895 17 C -0.128 4.128 18 C -0.134 4.134 19 C 0.105 3.895 20 N -0.614 5.614 21 C 0.513 3.487 22 O -0.488 6.488 23 C -0.165 4.165 24 C 0.513 3.487 25 N -0.861 5.861 26 O -0.493 6.493 27 C 0.106 3.894 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.399 0.601 43 H 0.403 0.597 44 H 0.098 0.902 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -32.480 2.849 32.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.355 5.355 3 C 0.323 3.677 4 O -0.387 6.387 5 C -0.299 4.299 6 S 0.165 5.835 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.137 4.137 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.024 3.976 16 H 0.123 0.877 17 C -0.166 4.166 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.351 5.351 21 C 0.298 3.702 22 O -0.359 6.359 23 C -0.208 4.208 24 C 0.295 3.705 25 N -0.427 5.427 26 O -0.364 6.364 27 C -0.018 4.018 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.226 0.774 43 H 0.234 0.766 44 H 0.116 0.884 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.612 -31.250 1.779 31.410 hybrid contribution -2.124 0.369 0.320 2.179 sum -4.736 -30.881 2.099 31.313 Atomic orbital electron populations 1.21776 0.79774 1.03210 1.01809 1.47811 1.06738 1.05071 1.75883 1.20398 0.87963 0.84538 0.74835 1.90699 1.13790 1.86618 1.47554 1.23550 1.04541 0.97077 1.04763 1.85436 1.08031 0.93337 1.96694 1.22854 0.94292 0.92202 1.58922 0.90939 1.25000 0.95681 0.98392 0.94581 1.70025 1.11736 1.21643 1.46844 0.86163 0.80270 0.80731 0.78298 1.20300 1.20758 1.19693 1.21178 0.99339 0.83218 0.93899 0.87663 1.21883 1.00383 0.95867 0.98510 1.21915 1.01407 0.96289 0.97624 1.21810 1.01825 0.93750 0.84395 1.48026 1.50538 1.18166 1.18326 1.19951 0.79251 0.87885 0.83123 1.90902 1.58245 1.56954 1.29774 1.21621 1.01679 0.98108 0.99356 1.20012 0.80080 0.81993 0.88443 1.43850 1.54335 1.19885 1.24631 1.90948 1.60172 1.43981 1.41313 1.21813 0.97313 0.82714 0.99920 0.92620 0.90450 0.91381 0.89151 0.89217 0.92195 0.91394 0.90837 0.90099 0.90959 0.90981 0.89705 0.85936 0.86076 0.77361 0.76580 0.88365 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.33 59.84 0.56 1.34 16 2 N -0.62 -8.73 2.76 -174.05 -0.48 -9.21 16 3 C 0.53 10.40 7.69 -10.98 -0.08 10.31 16 4 O -0.51 -12.11 15.19 5.56 0.08 -12.02 16 5 C -0.15 -3.07 4.71 36.01 0.17 -2.90 16 6 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 7 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 11 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.13 1.58 2.66 -68.03 -0.18 1.40 16 16 H 0.11 1.66 6.90 -51.93 -0.36 1.30 16 17 C -0.13 -1.10 5.15 -26.69 -0.14 -1.23 16 18 C -0.13 -0.78 6.08 -26.61 -0.16 -0.95 16 19 C 0.11 0.51 6.34 -3.71 -0.02 0.49 16 20 N -0.61 -5.72 2.98 -173.03 -0.52 -6.24 16 21 C 0.51 5.91 7.69 -10.98 -0.08 5.83 16 22 O -0.49 -8.59 13.59 -18.95 -0.26 -8.85 16 23 C -0.16 -1.01 4.53 -29.03 -0.13 -1.14 16 24 C 0.51 4.77 8.09 -10.99 -0.09 4.68 16 25 N -0.86 -3.77 8.87 31.22 0.28 -3.49 16 26 O -0.49 -7.88 15.02 -18.96 -0.28 -8.16 16 27 C 0.11 1.21 5.77 -3.93 -0.02 1.19 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.07 0.52 6.34 -51.93 -0.33 0.20 16 31 H 0.09 1.74 7.40 -51.92 -0.38 1.35 16 32 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 33 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 34 H 0.07 0.48 7.72 -51.93 -0.40 0.08 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.17 5.93 -51.93 -0.31 -0.14 16 40 H 0.12 0.38 7.69 -51.93 -0.40 -0.02 16 41 H 0.12 0.29 7.94 -51.93 -0.41 -0.12 16 42 H 0.40 0.19 8.83 -40.82 -0.36 -0.17 16 43 H 0.40 1.68 8.93 -40.82 -0.36 1.31 16 44 H 0.10 1.49 7.00 -51.93 -0.36 1.13 16 45 H 0.07 0.66 6.46 -51.93 -0.34 0.32 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -42.97 378.64 -8.39 -51.37 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.43 Total: -1.92 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 0.01 Total: 5.92 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.01 Total: -44.75 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.46 Total: -29.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -42.97 -8.39 -51.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295781821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.441 kcal (2) G-P(sol) polarization free energy of solvation -42.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds