Wall clock time and date at job start Wed Apr 1 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99828 * 2 1 4 4 O 1.21279 * 120.00472 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00020 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47200 * 179.97438 * 5 3 2 7 7 C 1.76198 * 99.99878 * 179.97438 * 6 5 3 8 8 H 1.08006 * 120.00031 * 359.97438 * 7 6 5 9 9 C 1.38801 * 120.00096 * 180.02562 * 7 6 5 10 10 N 1.31631 * 119.99737 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99933 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47383 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47375 * 119.99882 * 11 9 7 14 14 H 1.48505 * 109.46965 * 239.99565 * 11 9 7 15 15 C 1.46496 * 120.00628 * 179.97438 * 2 1 3 16 16 H 1.08996 * 109.50498 * 179.97438 * 15 2 1 17 17 C 1.53045 * 109.49455 * 59.93603 * 15 2 1 18 18 C 1.53046 * 109.53722 * 178.68615 * 17 15 2 19 19 C 1.53191 * 109.31193 * 61.36727 * 18 17 15 20 20 N 1.46929 * 108.77403 * 305.35983 * 19 18 17 21 21 C 1.34776 * 120.63281 * 233.61104 * 20 19 18 22 22 O 1.21279 * 120.00057 * 180.02562 * 21 20 19 23 23 C 1.50700 * 120.00001 * 0.02562 * 21 20 19 24 24 C 1.50699 * 109.47036 * 179.97438 * 23 21 20 25 25 N 1.34781 * 119.99756 * 180.02562 * 24 23 21 26 26 O 1.21278 * 119.99917 * 0.02562 * 24 23 21 27 27 C 1.46934 * 118.76234 * 53.59656 * 20 19 18 28 28 H 1.08997 * 109.47477 * 90.00366 * 1 2 3 29 29 H 1.09004 * 109.46971 * 209.99938 * 1 2 3 30 30 H 1.08993 * 109.47768 * 330.00002 * 1 2 3 31 31 H 1.09001 * 109.46953 * 299.99667 * 5 3 2 32 32 H 1.09000 * 109.47318 * 59.99264 * 5 3 2 33 33 H 0.97001 * 119.99701 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46200 * 298.70076 * 17 15 2 35 35 H 1.08994 * 109.46268 * 58.66874 * 17 15 2 36 36 H 1.09004 * 109.49869 * 181.31659 * 18 17 15 37 37 H 1.09002 * 109.49805 * 301.41442 * 18 17 15 38 38 H 1.08995 * 109.58939 * 65.15182 * 19 18 17 39 39 H 1.09005 * 109.58685 * 185.57818 * 19 18 17 40 40 H 1.08997 * 109.47332 * 300.00073 * 23 21 20 41 41 H 1.09001 * 109.46691 * 60.00095 * 23 21 20 42 42 H 0.96999 * 120.00111 * 0.02562 * 25 24 23 43 43 H 0.97003 * 119.99683 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.61333 * 186.63833 * 27 20 19 45 45 H 1.08999 * 109.56442 * 66.20589 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 16 2.5614 3.8481 0.0012 7 6 1.4412 5.2082 0.0010 8 1 0.3759 5.0304 0.0002 9 6 1.9279 6.5081 0.0009 10 7 3.2262 6.7248 0.0013 11 14 0.7403 7.9500 0.0014 12 1 -0.6551 7.4420 0.0014 13 1 0.9664 8.7771 1.2138 14 1 0.9655 8.7772 -1.2112 15 6 2.1976 -1.2686 0.0006 16 1 3.2693 -1.0700 0.0000 17 6 1.8271 -2.0729 -1.2477 18 6 2.6165 -3.3839 -1.2648 19 6 2.2498 -4.2123 -0.0294 20 7 2.4667 -3.3929 1.1708 21 6 3.2385 -3.8436 2.1796 22 8 3.4094 -3.1579 3.1652 23 6 3.8891 -5.1994 2.0829 24 6 4.6918 -5.4616 3.3311 25 7 5.3658 -6.6207 3.4677 26 8 4.7312 -4.6295 4.2125 27 6 1.8267 -2.0727 1.2507 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 0.7583 2.5303 -0.8892 32 1 0.7588 2.5298 0.8907 33 1 3.5663 7.6332 0.0016 34 1 0.7594 -2.2921 -1.2348 35 1 2.0678 -1.4925 -2.1383 36 1 2.3697 -3.9456 -2.1658 37 1 3.6844 -3.1658 -1.2526 38 1 1.2022 -4.5080 -0.0856 39 1 2.8804 -5.1003 0.0155 40 1 3.1201 -5.9647 1.9775 41 1 4.5484 -5.2249 1.2153 42 1 5.3345 -7.2860 2.7625 43 1 5.8828 -6.7893 4.2710 44 1 2.1782 -1.5489 2.1397 45 1 0.7446 -2.1940 1.2994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295781822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:42 Heat of formation + Delta-G solvation = -98.945349 kcal Electronic energy + Delta-G solvation = -27751.248390 eV Core-core repulsion = 23702.344831 eV Total energy + Delta-G solvation = -4048.903558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89094 -39.84380 -38.87336 -37.30504 -35.24642 -33.99620 -32.78392 -32.40635 -31.61375 -30.32512 -28.43845 -26.81145 -25.69600 -25.46816 -23.33808 -22.03748 -20.81083 -19.26874 -19.15039 -17.93205 -17.65207 -17.62326 -16.74073 -16.42366 -16.20198 -15.95815 -15.63295 -15.33350 -14.78609 -14.68606 -14.53834 -14.14302 -14.01644 -13.81585 -13.51646 -13.34378 -13.14423 -13.05799 -12.88694 -12.54281 -12.39748 -12.30113 -11.93269 -11.68787 -11.44100 -11.20223 -11.05419 -10.99733 -10.86944 -10.72702 -10.39212 -9.99935 -9.77948 -9.69463 -9.35916 -9.06484 -9.04976 -8.43846 -8.19381 -6.47565 -6.19410 -3.89818 2.27708 2.38969 2.51141 2.95843 3.05936 3.23149 3.23585 3.29787 3.33464 3.62536 4.00654 4.22145 4.37984 4.48248 4.49958 4.52469 4.68547 4.73693 4.77924 4.92093 5.03367 5.05865 5.11250 5.15666 5.22072 5.37076 5.41831 5.46127 5.56281 5.65521 5.71284 5.73276 5.90013 5.98007 6.05458 6.13281 6.15247 6.43105 6.66204 6.91799 7.09607 7.51386 7.62042 7.90974 8.06951 8.37561 8.55855 9.25845 10.88089 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.002186 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.965047 B =12805.218467 C =13611.924237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.535 3.465 4 O -0.513 6.513 5 C -0.149 4.149 6 S -0.062 6.062 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.129 3.871 16 H 0.106 0.894 17 C -0.128 4.128 18 C -0.133 4.133 19 C 0.105 3.895 20 N -0.614 5.614 21 C 0.513 3.487 22 O -0.488 6.488 23 C -0.165 4.165 24 C 0.513 3.487 25 N -0.861 5.861 26 O -0.493 6.493 27 C 0.106 3.894 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.399 0.601 43 H 0.403 0.597 44 H 0.098 0.902 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 -32.492 -2.829 32.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.355 5.355 3 C 0.323 3.677 4 O -0.387 6.387 5 C -0.299 4.299 6 S 0.165 5.835 7 C -0.682 4.682 8 H 0.091 0.909 9 C -0.137 4.137 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.024 3.976 16 H 0.124 0.876 17 C -0.166 4.166 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.351 5.351 21 C 0.298 3.702 22 O -0.359 6.359 23 C -0.208 4.208 24 C 0.295 3.705 25 N -0.427 5.427 26 O -0.364 6.364 27 C -0.018 4.018 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.226 0.774 43 H 0.234 0.766 44 H 0.116 0.884 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.623 -31.264 -1.766 31.424 hybrid contribution -2.115 0.372 -0.313 2.170 sum -4.738 -30.893 -2.079 31.323 Atomic orbital electron populations 1.21775 0.79775 1.03206 1.01809 1.47812 1.06741 1.05087 1.75870 1.20397 0.87964 0.84541 0.74838 1.90699 1.13790 1.86620 1.47556 1.23550 1.04535 0.97077 1.04764 1.85439 1.08053 0.93360 1.96689 1.22896 0.94324 0.92187 1.58799 0.90884 1.25003 0.95680 0.98405 0.94587 1.70033 1.11731 1.21541 1.46937 0.86111 0.80332 0.81125 0.77882 1.19620 1.20563 1.20599 1.21270 0.99309 0.83172 0.93860 0.87642 1.21884 1.00380 0.95863 0.98516 1.21917 1.01410 0.96295 0.97608 1.21810 1.01817 0.93722 0.84423 1.48032 1.50361 1.18286 1.18401 1.19951 0.79282 0.87864 0.83119 1.90903 1.58347 1.56953 1.29683 1.21619 1.01673 0.98113 0.99364 1.20011 0.80097 0.81998 0.88420 1.43853 1.54226 1.19925 1.24703 1.90947 1.60235 1.43869 1.41359 1.21910 0.97226 0.82728 0.99889 0.92622 0.91383 0.90454 0.89219 0.89150 0.92247 0.91396 0.90838 0.90101 0.90957 0.90986 0.89704 0.86069 0.85949 0.77360 0.76580 0.88354 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.33 59.84 0.56 1.34 16 2 N -0.62 -8.73 2.76 -173.80 -0.48 -9.21 16 3 C 0.53 10.40 7.69 -10.98 -0.08 10.31 16 4 O -0.51 -12.11 15.19 5.56 0.08 -12.02 16 5 C -0.15 -3.07 4.71 36.01 0.17 -2.90 16 6 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 7 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 10 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 11 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 C 0.13 1.59 2.67 -67.81 -0.18 1.41 16 16 H 0.11 1.67 6.90 -51.93 -0.36 1.31 16 17 C -0.13 -1.10 5.15 -26.68 -0.14 -1.23 16 18 C -0.13 -0.78 6.08 -26.61 -0.16 -0.94 16 19 C 0.11 0.51 6.34 -3.71 -0.02 0.49 16 20 N -0.61 -5.72 2.97 -172.76 -0.51 -6.24 16 21 C 0.51 5.91 7.69 -10.99 -0.08 5.82 16 22 O -0.49 -8.59 13.59 -18.96 -0.26 -8.85 16 23 C -0.16 -1.01 4.53 -29.04 -0.13 -1.14 16 24 C 0.51 4.78 8.09 -10.98 -0.09 4.69 16 25 N -0.86 -3.77 8.87 31.22 0.28 -3.49 16 26 O -0.49 -7.88 15.02 -18.96 -0.28 -8.16 16 27 C 0.11 1.21 5.79 -3.70 -0.02 1.19 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 30 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 31 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 32 H 0.09 1.74 7.40 -51.92 -0.38 1.35 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.07 0.48 7.71 -51.93 -0.40 0.08 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.17 5.93 -51.93 -0.31 -0.14 16 40 H 0.12 0.29 7.94 -51.93 -0.41 -0.12 16 41 H 0.12 0.38 7.69 -51.93 -0.40 -0.02 16 42 H 0.40 0.20 8.83 -40.82 -0.36 -0.16 16 43 H 0.40 1.68 8.93 -40.82 -0.36 1.31 16 44 H 0.10 1.49 7.01 -51.93 -0.36 1.12 16 45 H 0.07 0.66 6.48 -51.93 -0.34 0.32 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -43.00 378.68 -8.39 -51.39 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.43 Total: -1.95 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 0.01 Total: 5.93 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.02 Total: -44.75 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.46 Total: -29.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -43.00 -8.39 -51.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295781822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.555 kcal (2) G-P(sol) polarization free energy of solvation -43.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds