Wall clock time and date at job start Wed Apr 1 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00496 * 2 1 4 4 C 1.52998 * 109.47151 * 269.99890 * 3 2 1 5 5 N 1.46506 * 109.46917 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99870 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00363 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99944 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47068 * 179.97438 * 8 6 5 10 10 C 1.76201 * 100.00083 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99528 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99954 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00068 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99661 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47089 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47167 * 119.99819 * 14 12 10 17 17 H 1.48497 * 109.46668 * 239.99447 * 14 12 10 18 18 C 1.34782 * 119.99837 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00255 * 180.02562 * 18 2 1 20 20 C 1.50706 * 119.99655 * 0.02562 * 18 2 1 21 21 H 1.08999 * 109.30027 * 319.57877 * 20 18 2 22 22 C 1.52917 * 109.30203 * 78.96479 * 20 18 2 23 23 C 1.53346 * 108.67396 * 171.06297 * 22 20 18 24 24 C 1.53070 * 108.42430 * 292.46765 * 23 22 20 25 25 C 1.50168 * 109.89080 * 48.89962 * 24 23 22 26 26 O 1.21282 * 118.24697 * 162.39296 * 25 24 23 27 27 N 1.33355 * 123.51148 * 342.41938 * 25 24 23 28 28 H 1.08992 * 109.46993 * 270.00209 * 1 2 3 29 29 H 1.09001 * 109.46424 * 29.99642 * 1 2 3 30 30 H 1.08998 * 109.46921 * 149.99484 * 1 2 3 31 31 H 1.09009 * 109.46937 * 30.00105 * 3 2 1 32 32 H 1.08999 * 109.47448 * 149.99453 * 3 2 1 33 33 H 1.08992 * 109.47554 * 299.99757 * 4 3 2 34 34 H 1.09004 * 109.47089 * 60.00380 * 4 3 2 35 35 H 0.97001 * 120.00073 * 0.02562 * 5 4 3 36 36 H 1.08992 * 109.47073 * 300.00458 * 8 6 5 37 37 H 1.09004 * 109.46593 * 60.00483 * 8 6 5 38 38 H 0.96998 * 119.99910 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.60202 * 290.81629 * 22 20 18 40 40 H 1.08999 * 109.60258 * 51.30237 * 22 20 18 41 41 H 1.09005 * 109.67312 * 172.73418 * 23 22 20 42 42 H 1.09003 * 109.70356 * 52.21827 * 23 22 20 43 43 H 1.08997 * 109.39927 * 288.76867 * 24 23 22 44 44 H 1.08996 * 109.40015 * 169.03381 * 24 23 22 45 45 H 0.96999 * 117.94811 * 182.24922 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7103 -1.4425 5 7 3.1848 2.9793 -1.4424 6 6 3.5221 3.5626 -2.6096 7 8 3.2193 3.0374 -3.6600 8 6 4.2757 4.8678 -2.6095 9 16 4.5787 5.3895 -4.3160 10 6 5.4482 6.8944 -4.0260 11 1 5.6374 7.2223 -3.0146 12 6 5.8899 7.6582 -5.0975 13 7 5.6597 7.2581 -6.3302 14 14 6.8124 9.2532 -4.7900 15 1 6.9410 9.4766 -3.3276 16 1 8.1641 9.1686 -5.3990 17 1 6.0649 10.3825 -5.3991 18 6 2.1389 -1.1673 0.0005 19 8 3.3517 -1.1674 0.0010 20 6 1.3853 -2.4724 0.0005 21 1 0.5266 -2.3925 0.6672 22 6 0.8938 -2.7722 -1.4161 23 6 0.3290 -4.1975 -1.4485 24 6 1.4839 -5.1804 -1.2407 25 6 2.3064 -4.7594 -0.0570 26 8 3.0490 -5.5760 0.4456 27 7 2.2636 -3.5358 0.4716 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1383 0.5139 33 1 3.0417 0.9507 -1.9563 34 1 1.5002 1.8407 -1.9563 35 1 3.4273 3.3993 -0.6024 36 1 3.6866 5.6274 -2.0960 37 1 5.2280 4.7373 -2.0954 38 1 5.9687 7.7917 -7.0789 39 1 0.1127 -2.0630 -1.6900 40 1 1.7254 -2.6924 -2.1163 41 1 -0.1423 -4.3837 -2.4136 42 1 -0.4050 -4.3201 -0.6520 43 1 2.1119 -5.1946 -2.1314 44 1 1.0827 -6.1788 -1.0663 45 1 2.8544 -3.3412 1.2159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296008164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:54 Heat of formation + Delta-G solvation = -107.764118 kcal Electronic energy + Delta-G solvation = -26917.475023 eV Core-core repulsion = 22868.189054 eV Total energy + Delta-G solvation = -4049.285969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39636 -39.90548 -39.11892 -36.87739 -36.47485 -34.53126 -33.53443 -32.44381 -31.27341 -30.05472 -28.44388 -27.24814 -25.68470 -25.40849 -23.39068 -23.17439 -20.67306 -19.94917 -19.70892 -17.92911 -17.90435 -17.83058 -16.92549 -16.61568 -16.32974 -15.79525 -15.49561 -15.46699 -15.19901 -14.81750 -14.66912 -14.52011 -14.27676 -14.10763 -13.94138 -13.76717 -13.44206 -13.20398 -12.96718 -12.58739 -12.57906 -12.41504 -12.17781 -12.10185 -11.63796 -11.60296 -11.48116 -11.08091 -11.03545 -10.77759 -10.63849 -10.14963 -9.83028 -9.59980 -9.48497 -9.26150 -9.09562 -8.97194 -8.25253 -6.51841 -6.23264 -3.93917 1.93357 2.04918 2.32492 2.83187 3.04990 3.06875 3.20645 3.27844 3.32876 3.65376 3.77472 3.94974 4.00688 4.15324 4.18829 4.29991 4.41840 4.53289 4.56505 4.64236 4.79710 4.85933 4.97706 5.08942 5.09233 5.12101 5.14796 5.18437 5.26320 5.29083 5.52117 5.55893 5.57214 5.69105 5.86558 5.94376 6.11430 6.26883 6.51745 6.68524 6.84393 7.52361 7.58453 7.62678 7.77784 8.34044 8.55525 9.22257 10.84246 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.001707 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.568878 B =16398.634438 C =16592.404995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.609 5.609 3 C 0.105 3.895 4 C 0.108 3.892 5 N -0.737 5.737 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.502 3.498 19 O -0.516 6.516 20 C 0.128 3.872 21 H 0.100 0.900 22 C -0.134 4.134 23 C -0.121 4.121 24 C -0.138 4.138 25 C 0.525 3.475 26 O -0.552 6.552 27 N -0.702 5.702 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 -19.688 16.502 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.343 5.343 3 C -0.019 4.019 4 C -0.018 4.018 5 N -0.393 5.393 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.287 3.713 19 O -0.391 6.391 20 C 0.019 3.981 21 H 0.118 0.882 22 C -0.172 4.172 23 C -0.158 4.158 24 C -0.178 4.178 25 C 0.312 3.688 26 O -0.430 6.430 27 N -0.355 5.355 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -16.939 -21.037 14.620 30.712 hybrid contribution 1.175 2.176 2.041 3.206 sum -15.764 -18.861 16.661 29.695 Atomic orbital electron populations 1.22089 0.78712 1.04317 1.02580 1.47668 1.07346 1.05509 1.73789 1.21647 0.98680 0.84676 0.96859 1.21541 0.97263 0.86538 0.96415 1.45835 1.60312 1.24045 1.09100 1.20319 0.78665 0.86008 0.83059 1.90706 1.52991 1.64318 1.30986 1.23528 1.02100 0.96160 1.08577 1.85408 1.73501 1.27318 0.97195 1.22907 1.41942 1.07932 0.95546 0.90838 1.25002 0.95807 0.98399 0.94434 1.70025 1.44008 1.38175 0.98062 0.86106 0.79195 0.81675 0.78451 1.19613 1.20553 1.20567 1.20871 0.88333 0.85406 0.76643 1.90799 1.13544 1.86877 1.47835 1.20896 0.92905 0.85550 0.98771 0.88194 1.21988 1.02676 0.98702 0.93853 1.21665 0.97398 0.92863 1.03896 1.21703 0.97570 1.01355 0.97192 1.20186 0.82655 0.81179 0.84778 1.90788 1.40875 1.49811 1.61513 1.45245 1.42632 1.10762 1.36867 0.91807 0.89993 0.90350 0.89386 0.88936 0.91307 0.91500 0.76746 0.89135 0.89117 0.92222 0.88568 0.89666 0.89507 0.90622 0.87776 0.87747 0.75841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 9.90 59.85 0.59 0.75 16 2 N -0.61 -3.78 2.87 -181.57 -0.52 -4.30 16 3 C 0.10 0.77 5.52 -4.05 -0.02 0.75 16 4 C 0.11 1.19 6.00 -4.04 -0.02 1.17 16 5 N -0.74 -9.38 5.56 -60.29 -0.33 -9.71 16 6 C 0.53 9.81 7.85 -10.98 -0.09 9.72 16 7 O -0.52 -11.68 15.86 5.56 0.09 -11.59 16 8 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 14 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.50 4.17 6.84 -10.98 -0.08 4.09 16 19 O -0.52 -6.71 15.96 5.56 0.09 -6.62 16 20 C 0.13 0.69 2.65 -69.52 -0.18 0.51 16 21 H 0.10 0.26 7.22 -51.93 -0.38 -0.12 16 22 C -0.13 -0.54 5.06 -26.59 -0.13 -0.68 16 23 C -0.12 -0.35 6.03 -26.52 -0.16 -0.51 16 24 C -0.14 -0.76 6.03 -28.10 -0.17 -0.93 16 25 C 0.52 4.95 7.71 -11.87 -0.09 4.86 16 26 O -0.55 -7.71 17.78 5.56 0.10 -7.61 16 27 N -0.70 -5.66 4.79 -55.99 -0.27 -5.93 16 28 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16 30 H 0.08 0.06 4.61 -51.93 -0.24 -0.18 16 31 H 0.09 0.43 8.07 -51.92 -0.42 0.01 16 32 H 0.09 0.81 7.42 -51.93 -0.39 0.42 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 3.75 8.47 -40.82 -0.35 3.41 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.10 0.19 6.14 -51.93 -0.32 -0.13 16 40 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.08 0.14 8.13 -51.93 -0.42 -0.28 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.40 3.64 8.44 -40.82 -0.34 3.29 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -40.62 388.16 -8.05 -48.67 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.62 Total: 0.17 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 0.06 Total: 3.99 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.39 Total: -45.33 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.28 Total: -25.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -40.62 -8.05 -48.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296008164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.090 kcal (2) G-P(sol) polarization free energy of solvation -40.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds