Wall clock time and date at job start Wed Apr 1 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00496 * 2 1 4 4 C 1.52998 * 109.47151 * 269.99890 * 3 2 1 5 5 N 1.46506 * 109.46917 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99870 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00363 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99944 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47068 * 179.97438 * 8 6 5 10 10 C 1.76201 * 100.00083 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99528 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99954 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00068 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99661 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47089 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47167 * 119.99819 * 14 12 10 17 17 H 1.48497 * 109.46668 * 239.99447 * 14 12 10 18 18 C 1.34782 * 119.99837 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00255 * 180.02562 * 18 2 1 20 20 C 1.50706 * 119.99655 * 0.02562 * 18 2 1 21 21 H 1.08999 * 109.30027 * 319.57877 * 20 18 2 22 22 C 1.52917 * 109.30203 * 78.96479 * 20 18 2 23 23 C 1.53346 * 108.67396 * 171.06297 * 22 20 18 24 24 C 1.53070 * 108.42430 * 292.46765 * 23 22 20 25 25 C 1.50168 * 109.89080 * 48.89962 * 24 23 22 26 26 O 1.21282 * 118.24697 * 162.39296 * 25 24 23 27 27 N 1.33355 * 123.51148 * 342.41938 * 25 24 23 28 28 H 1.08992 * 109.46993 * 270.00209 * 1 2 3 29 29 H 1.09001 * 109.46424 * 29.99642 * 1 2 3 30 30 H 1.08998 * 109.46921 * 149.99484 * 1 2 3 31 31 H 1.09009 * 109.46937 * 30.00105 * 3 2 1 32 32 H 1.08999 * 109.47448 * 149.99453 * 3 2 1 33 33 H 1.08992 * 109.47554 * 299.99757 * 4 3 2 34 34 H 1.09004 * 109.47089 * 60.00380 * 4 3 2 35 35 H 0.97001 * 120.00073 * 0.02562 * 5 4 3 36 36 H 1.08992 * 109.47073 * 300.00458 * 8 6 5 37 37 H 1.09004 * 109.46593 * 60.00483 * 8 6 5 38 38 H 0.96998 * 119.99910 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.60202 * 290.81629 * 22 20 18 40 40 H 1.08999 * 109.60258 * 51.30237 * 22 20 18 41 41 H 1.09005 * 109.67312 * 172.73418 * 23 22 20 42 42 H 1.09003 * 109.70356 * 52.21827 * 23 22 20 43 43 H 1.08997 * 109.39927 * 288.76867 * 24 23 22 44 44 H 1.08996 * 109.40015 * 169.03381 * 24 23 22 45 45 H 0.96999 * 117.94811 * 182.24922 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7103 -1.4425 5 7 3.1848 2.9793 -1.4424 6 6 3.5221 3.5626 -2.6096 7 8 3.2193 3.0374 -3.6600 8 6 4.2757 4.8678 -2.6095 9 16 4.5787 5.3895 -4.3160 10 6 5.4482 6.8944 -4.0260 11 1 5.6374 7.2223 -3.0146 12 6 5.8899 7.6582 -5.0975 13 7 5.6597 7.2581 -6.3302 14 14 6.8124 9.2532 -4.7900 15 1 6.9410 9.4766 -3.3276 16 1 8.1641 9.1686 -5.3990 17 1 6.0649 10.3825 -5.3991 18 6 2.1389 -1.1673 0.0005 19 8 3.3517 -1.1674 0.0010 20 6 1.3853 -2.4724 0.0005 21 1 0.5266 -2.3925 0.6672 22 6 0.8938 -2.7722 -1.4161 23 6 0.3290 -4.1975 -1.4485 24 6 1.4839 -5.1804 -1.2407 25 6 2.3064 -4.7594 -0.0570 26 8 3.0490 -5.5760 0.4456 27 7 2.2636 -3.5358 0.4716 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1383 0.5139 33 1 3.0417 0.9507 -1.9563 34 1 1.5002 1.8407 -1.9563 35 1 3.4273 3.3993 -0.6024 36 1 3.6866 5.6274 -2.0960 37 1 5.2280 4.7373 -2.0954 38 1 5.9687 7.7917 -7.0789 39 1 0.1127 -2.0630 -1.6900 40 1 1.7254 -2.6924 -2.1163 41 1 -0.1423 -4.3837 -2.4136 42 1 -0.4050 -4.3201 -0.6520 43 1 2.1119 -5.1946 -2.1314 44 1 1.0827 -6.1788 -1.0663 45 1 2.8544 -3.3412 1.2159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296008164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:54 Heat of formation + Delta-G solvation = -141.124343 kcal Electronic energy + Delta-G solvation = -26918.921631 eV Core-core repulsion = 22868.189054 eV Total energy + Delta-G solvation = -4050.732577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99418 -40.78054 -40.36095 -37.56276 -37.19310 -35.63572 -34.59223 -34.00340 -32.21778 -31.03526 -29.40808 -27.73657 -27.61015 -26.14615 -23.99028 -23.83292 -21.94826 -20.70621 -20.16821 -19.82360 -18.51669 -18.43176 -17.91285 -17.55215 -17.43979 -16.88858 -16.76032 -16.57061 -16.13375 -16.12306 -15.65658 -15.34137 -15.12681 -14.86345 -14.73218 -14.60224 -14.54773 -14.29468 -13.91074 -13.60825 -13.21884 -13.16935 -13.11909 -13.07422 -12.92115 -12.63995 -12.60064 -12.38932 -11.97348 -11.89676 -11.72477 -11.37122 -11.16622 -11.06711 -10.81622 -10.28572 -10.21993 -10.19556 -9.84081 -8.67851 -8.35625 -6.13753 1.21805 1.33239 1.40296 1.41177 1.48061 1.56673 1.57595 1.74411 2.22516 2.26512 2.43969 2.98727 3.25142 3.32205 3.52776 3.59313 3.78813 3.81694 3.90989 3.99707 4.01615 4.17702 4.28864 4.29431 4.37596 4.49370 4.50143 4.68690 4.69094 4.75298 4.78191 4.87704 4.89695 5.05293 5.09717 5.26049 5.27195 5.41733 5.44119 5.59282 6.13061 6.19483 6.25575 6.44587 6.93260 7.05909 7.08295 7.19898 8.73877 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.001707 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.568878 B =16398.634438 C =16592.404995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.602 5.602 3 C 0.112 3.888 4 C 0.112 3.888 5 N -0.710 5.710 6 C 0.534 3.466 7 O -0.566 6.566 8 C -0.129 4.129 9 S -0.154 6.154 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.273 1.273 18 C 0.496 3.504 19 O -0.575 6.575 20 C 0.130 3.870 21 H 0.142 0.858 22 C -0.134 4.134 23 C -0.110 4.110 24 C -0.137 4.137 25 C 0.517 3.483 26 O -0.610 6.610 27 N -0.702 5.702 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.419 0.581 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.271 0.729 39 H 0.126 0.874 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.766 -18.662 18.615 32.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.335 5.335 3 C -0.011 4.011 4 C -0.013 4.013 5 N -0.365 5.365 6 C 0.320 3.680 7 O -0.444 6.444 8 C -0.280 4.280 9 S 0.074 5.926 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.198 1.198 18 C 0.283 3.717 19 O -0.454 6.454 20 C 0.022 3.978 21 H 0.160 0.840 22 C -0.172 4.172 23 C -0.148 4.148 24 C -0.176 4.176 25 C 0.306 3.694 26 O -0.492 6.492 27 N -0.352 5.352 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.256 0.744 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -19.443 -19.981 16.792 32.546 hybrid contribution 1.866 1.814 1.468 2.988 sum -17.577 -18.167 18.259 31.183 Atomic orbital electron populations 1.22452 0.75790 1.05768 1.04584 1.47782 1.09038 1.04367 1.72294 1.21563 0.99279 0.86195 0.94093 1.21622 0.96329 0.84467 0.98900 1.45537 1.58703 1.24034 1.08246 1.20089 0.78493 0.85584 0.83826 1.90694 1.55212 1.65434 1.33084 1.23370 1.03739 0.97629 1.03303 1.85593 1.74073 1.28378 1.04600 1.23241 1.41908 1.07956 0.96191 0.89800 1.26145 0.96646 1.02474 0.94008 1.70188 1.45372 1.39986 0.99250 0.84890 0.77451 0.76404 0.79102 1.17971 1.20111 1.19805 1.21446 0.87821 0.86838 0.75578 1.90777 1.16168 1.87747 1.50715 1.21217 0.92861 0.83074 1.00675 0.84040 1.22069 1.02597 1.00470 0.92088 1.21682 0.96408 0.90802 1.05863 1.21769 0.98091 1.02766 0.95011 1.20953 0.82289 0.80935 0.85219 1.90749 1.43455 1.51565 1.63434 1.45387 1.42498 1.11107 1.36244 0.89475 0.89243 0.88362 0.85653 0.90355 0.94732 0.90929 0.74366 0.86599 0.87402 0.91994 0.85647 0.92332 0.87438 0.88473 0.87965 0.86722 0.76863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.02 9.90 127.77 1.26 1.29 16 2 N -0.60 -5.99 2.87 -846.75 -2.43 -8.42 16 3 C 0.11 1.41 5.52 86.38 0.48 1.88 16 4 C 0.11 2.35 6.00 86.38 0.52 2.86 16 5 N -0.71 -16.91 5.56 -463.05 -2.57 -19.48 16 6 C 0.53 19.41 7.85 87.66 0.69 20.09 16 7 O -0.57 -26.21 15.86 -3.04 -0.05 -26.25 16 8 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.68 5.49 84.86 0.47 1.14 16 13 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 14 Si 1.00 43.49 29.55 68.60 2.03 45.51 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.50 7.76 6.84 87.66 0.60 8.36 16 19 O -0.58 -15.53 15.96 -3.03 -0.05 -15.58 16 20 C 0.13 1.15 2.65 44.36 0.12 1.27 16 21 H 0.14 0.13 7.22 -2.39 -0.02 0.11 16 22 C -0.13 -0.77 5.06 30.68 0.16 -0.61 16 23 C -0.11 -0.31 6.03 30.73 0.19 -0.12 16 24 C -0.14 -1.38 6.03 29.70 0.18 -1.20 16 25 C 0.52 10.00 7.71 87.71 0.68 10.67 16 26 O -0.61 -18.13 17.78 -3.04 -0.05 -18.18 16 27 N -0.70 -11.31 4.79 -450.24 -2.16 -13.47 16 28 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.09 -0.01 8.07 -2.39 -0.02 -0.03 16 30 H 0.10 -0.34 4.61 -2.39 -0.01 -0.35 16 31 H 0.13 0.69 8.07 -2.38 -0.02 0.67 16 32 H 0.08 1.27 7.42 -2.39 -0.02 1.25 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.42 6.71 8.47 -92.71 -0.79 5.92 16 36 H 0.12 3.92 8.14 -2.40 -0.02 3.90 16 37 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 38 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.13 -0.02 6.14 -2.38 -0.01 -0.03 16 40 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 41 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 42 H 0.10 -0.07 8.13 -2.39 -0.02 -0.09 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.40 7.53 8.44 -92.71 -0.78 6.75 16 Total: -1.00 -96.07 388.16 -0.28 -96.35 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -0.53 Total: 14.22 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.41 Total: 10.68 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -6.88 Total: -97.07 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -0.15 Total: -60.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -96.07 -0.28 -96.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296008164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.772 kcal (2) G-P(sol) polarization free energy of solvation -96.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds