Wall clock time and date at job start Wed Apr 1 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99506 * 2 1 4 4 C 1.53001 * 109.46765 * 269.99718 * 3 2 1 5 5 N 1.46510 * 109.47024 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00079 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99783 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46989 * 179.97438 * 8 6 5 10 10 C 1.76199 * 99.99898 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00259 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99928 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00110 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00036 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46836 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46923 * 119.99852 * 14 12 10 17 17 H 1.48494 * 109.47112 * 239.99736 * 14 12 10 18 18 C 1.34772 * 120.00140 * 179.97438 * 2 1 3 19 19 O 1.21287 * 119.99938 * 179.97438 * 18 2 1 20 20 C 1.50694 * 119.99975 * 0.02562 * 18 2 1 21 21 C 1.53000 * 109.47276 * 179.97438 * 20 18 2 22 22 H 1.09000 * 110.21727 * 304.52186 * 21 20 18 23 23 C 1.54474 * 110.24927 * 182.50055 * 21 20 18 24 24 C 1.54625 * 101.76763 * 215.58217 * 23 21 20 25 25 C 1.51286 * 104.19405 * 24.79834 * 24 23 21 26 26 O 1.21278 * 124.94126 * 163.77989 * 25 24 23 27 27 N 1.34417 * 110.11297 * 343.74897 * 25 24 23 28 28 H 1.09003 * 109.46652 * 270.00037 * 1 2 3 29 29 H 1.08997 * 109.47261 * 29.99748 * 1 2 3 30 30 H 1.08997 * 109.47339 * 150.00194 * 1 2 3 31 31 H 1.08988 * 109.47468 * 30.00132 * 3 2 1 32 32 H 1.09001 * 109.46416 * 150.00667 * 3 2 1 33 33 H 1.08994 * 109.47779 * 300.00149 * 4 3 2 34 34 H 1.09008 * 109.46942 * 60.00804 * 4 3 2 35 35 H 0.96998 * 119.99717 * 0.02562 * 5 4 3 36 36 H 1.09005 * 109.47260 * 299.99890 * 8 6 5 37 37 H 1.09001 * 109.47451 * 60.00104 * 8 6 5 38 38 H 0.97001 * 120.00293 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47795 * 60.00048 * 20 18 2 40 40 H 1.09003 * 109.47015 * 299.99877 * 20 18 2 41 41 H 1.09001 * 110.97106 * 97.46307 * 23 21 20 42 42 H 1.09007 * 110.96855 * 333.70166 * 23 21 20 43 43 H 1.09001 * 110.48978 * 266.11806 * 24 23 21 44 44 H 1.09000 * 110.49031 * 143.47236 * 24 23 21 45 45 H 0.97006 * 124.34688 * 179.62103 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1854 2.9790 -1.4426 6 6 3.5219 3.5627 -2.6098 7 8 3.2185 3.0377 -3.6601 8 6 4.2764 4.8672 -2.6098 9 16 4.5779 5.3898 -4.3163 10 6 5.4474 6.8946 -4.0264 11 1 5.6367 7.2227 -3.0150 12 6 5.8891 7.6584 -5.0979 13 7 5.6589 7.2584 -6.3306 14 14 6.8103 9.2542 -4.7905 15 1 6.9391 9.4776 -3.3281 16 1 8.1624 9.1703 -5.3989 17 1 6.0623 10.3829 -5.4003 18 6 2.1389 -1.1671 0.0005 19 8 3.3518 -1.1671 0.0001 20 6 1.3855 -2.4722 0.0005 21 6 2.3797 -3.6351 0.0005 22 1 3.0651 -3.5448 -0.8422 23 6 1.6266 -4.9824 -0.0627 24 6 2.5178 -5.8837 0.8229 25 6 3.2256 -4.9148 1.7444 26 8 3.7983 -5.2223 2.7682 27 7 3.1278 -3.6637 1.2628 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0415 0.9509 -1.9564 34 1 1.4999 1.8408 -1.9564 35 1 3.4284 3.3987 -0.6026 36 1 3.6882 5.6272 -2.0953 37 1 5.2290 4.7361 -2.0967 38 1 5.9679 7.7920 -7.0794 39 1 0.7591 -2.5303 -0.8897 40 1 0.7585 -2.5298 0.8903 41 1 1.5852 -5.3586 -1.0849 42 1 0.6253 -4.8897 0.3581 43 1 3.2396 -6.4253 0.2116 44 1 1.9057 -6.5787 1.3977 45 1 3.5039 -2.8803 1.6940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296008383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:38 Heat of formation + Delta-G solvation = -110.485040 kcal Electronic energy + Delta-G solvation = -26476.934385 eV Core-core repulsion = 22427.530428 eV Total energy + Delta-G solvation = -4049.403957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12370 -40.04677 -39.11564 -37.09298 -36.30902 -34.54159 -32.44079 -31.96205 -31.70354 -30.37212 -28.51036 -27.12728 -25.76780 -25.42914 -23.19660 -21.84601 -20.96265 -20.55026 -19.57207 -17.89988 -17.85158 -17.32697 -17.12568 -16.78883 -16.39661 -15.85287 -15.57257 -15.42222 -15.09644 -14.81488 -14.28691 -14.24826 -14.03182 -13.88022 -13.81790 -13.54713 -13.32340 -13.19630 -13.10858 -12.84008 -12.57623 -12.53275 -12.21133 -12.16786 -11.97092 -11.58702 -11.45662 -11.07850 -11.03238 -10.77390 -10.32458 -10.21461 -9.82576 -9.51291 -9.50109 -9.21308 -9.09225 -8.95985 -8.24962 -6.51551 -6.23017 -3.93650 2.08978 2.24634 2.33358 2.98825 3.05748 3.07460 3.20842 3.28120 3.33428 3.67625 3.76576 3.88745 4.03400 4.16548 4.19114 4.51455 4.53448 4.57992 4.59372 4.65793 4.72888 4.82748 4.94063 5.09955 5.12348 5.14892 5.15437 5.17514 5.17719 5.30724 5.50190 5.58034 5.59040 5.72497 5.87151 5.98236 6.11924 6.44049 6.53255 6.68657 6.81200 7.58677 7.61619 7.65041 7.91257 8.34275 8.56407 9.22508 10.84487 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.001594 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.273268 B =17561.930967 C =17879.008690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.104 3.896 4 C 0.109 3.891 5 N -0.737 5.737 6 C 0.533 3.467 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.511 3.489 19 O -0.530 6.530 20 C -0.151 4.151 21 C 0.145 3.855 22 H 0.093 0.907 23 C -0.129 4.129 24 C -0.157 4.157 25 C 0.516 3.484 26 O -0.539 6.539 27 N -0.719 5.719 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 -22.324 16.182 31.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.347 5.347 3 C -0.019 4.019 4 C -0.017 4.017 5 N -0.393 5.393 6 C 0.319 3.681 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.299 3.701 19 O -0.406 6.406 20 C -0.191 4.191 21 C 0.039 3.961 22 H 0.111 0.889 23 C -0.167 4.167 24 C -0.197 4.197 25 C 0.302 3.698 26 O -0.416 6.416 27 N -0.375 5.375 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.244 -23.438 14.711 31.593 hybrid contribution 1.024 2.376 1.834 3.172 sum -14.219 -21.062 16.545 30.324 Atomic orbital electron populations 1.21916 0.78790 1.03990 1.02230 1.47738 1.07311 1.05766 1.73885 1.21617 0.98627 0.84916 0.96744 1.21540 0.97175 0.86492 0.96477 1.45841 1.60259 1.24108 1.09078 1.20312 0.78678 0.85995 0.83066 1.90703 1.53014 1.64327 1.31007 1.23529 1.02095 0.96184 1.08564 1.85404 1.73518 1.27290 0.97209 1.22911 1.41943 1.07942 0.95552 0.90840 1.24998 0.95795 0.98385 0.94425 1.70026 1.44009 1.38185 0.98062 0.86108 0.79191 0.81690 0.78454 1.19616 1.20554 1.20560 1.20715 0.88174 0.85377 0.75868 1.90770 1.13725 1.87198 1.48911 1.22153 0.99456 0.91854 1.05671 1.21464 0.92781 0.93909 0.87991 0.88923 1.22718 0.99028 0.93196 1.01775 1.22358 1.00292 0.98396 0.98639 1.20908 0.79475 0.84253 0.85176 1.90766 1.44862 1.80833 1.25162 1.46362 1.56643 1.09788 1.24691 0.92115 0.90350 0.90601 0.89677 0.88988 0.91286 0.91619 0.76765 0.89147 0.89113 0.92225 0.86884 0.87923 0.88657 0.89597 0.87617 0.87952 0.74583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 10.24 59.85 0.61 0.83 16 2 N -0.61 -3.92 2.87 -181.57 -0.52 -4.44 16 3 C 0.10 0.80 5.52 -4.04 -0.02 0.78 16 4 C 0.11 1.23 6.00 -4.04 -0.02 1.20 16 5 N -0.74 -9.54 5.56 -60.29 -0.33 -9.87 16 6 C 0.53 9.90 7.85 -10.99 -0.09 9.81 16 7 O -0.52 -11.78 15.86 5.56 0.09 -11.69 16 8 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 14 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.51 3.88 7.48 -10.99 -0.08 3.79 16 19 O -0.53 -6.17 14.45 5.55 0.08 -6.08 16 20 C -0.15 -0.55 3.87 -27.89 -0.11 -0.66 16 21 C 0.14 0.73 3.02 -67.01 -0.20 0.52 16 22 H 0.09 0.58 7.99 -51.93 -0.42 0.16 16 23 C -0.13 -0.32 6.69 -25.10 -0.17 -0.49 16 24 C -0.16 -0.75 6.86 -26.74 -0.18 -0.93 16 25 C 0.52 4.80 8.43 -10.86 -0.09 4.71 16 26 O -0.54 -7.57 18.03 5.56 0.10 -7.47 16 27 N -0.72 -5.68 5.60 -52.77 -0.30 -5.98 16 28 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.08 0.23 8.07 -51.93 -0.42 -0.18 16 30 H 0.08 0.09 6.44 -51.93 -0.33 -0.25 16 31 H 0.08 0.47 8.07 -51.94 -0.42 0.05 16 32 H 0.09 0.82 7.42 -51.93 -0.39 0.43 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.40 3.85 8.47 -40.82 -0.35 3.51 16 36 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 37 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 39 H 0.11 0.15 7.40 -51.93 -0.38 -0.23 16 40 H 0.10 0.23 8.11 -51.93 -0.42 -0.19 16 41 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.09 0.09 7.91 -51.93 -0.41 -0.32 16 43 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.41 3.81 7.89 -40.82 -0.32 3.49 16 LS Contribution 393.17 15.07 5.92 5.92 Total: -1.00 -40.44 393.17 -8.18 -48.62 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.78 Total: 0.13 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 0.06 Total: 3.78 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.42 Total: -45.70 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.27 Total: -25.25 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.44 -8.18 -48.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296008383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.868 kcal (2) G-P(sol) polarization free energy of solvation -40.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds