Wall clock time and date at job start Wed Apr 1 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99506 * 2 1 4 4 C 1.53001 * 109.46765 * 269.99718 * 3 2 1 5 5 N 1.46510 * 109.47024 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00079 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99783 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46989 * 179.97438 * 8 6 5 10 10 C 1.76199 * 99.99898 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00259 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99928 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00110 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00036 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46836 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46923 * 119.99852 * 14 12 10 17 17 H 1.48494 * 109.47112 * 239.99736 * 14 12 10 18 18 C 1.34772 * 120.00140 * 179.97438 * 2 1 3 19 19 O 1.21287 * 119.99938 * 179.97438 * 18 2 1 20 20 C 1.50694 * 119.99975 * 0.02562 * 18 2 1 21 21 C 1.53000 * 109.47276 * 179.97438 * 20 18 2 22 22 H 1.09000 * 110.21727 * 304.52186 * 21 20 18 23 23 C 1.54474 * 110.24927 * 182.50055 * 21 20 18 24 24 C 1.54625 * 101.76763 * 215.58217 * 23 21 20 25 25 C 1.51286 * 104.19405 * 24.79834 * 24 23 21 26 26 O 1.21278 * 124.94126 * 163.77989 * 25 24 23 27 27 N 1.34417 * 110.11297 * 343.74897 * 25 24 23 28 28 H 1.09003 * 109.46652 * 270.00037 * 1 2 3 29 29 H 1.08997 * 109.47261 * 29.99748 * 1 2 3 30 30 H 1.08997 * 109.47339 * 150.00194 * 1 2 3 31 31 H 1.08988 * 109.47468 * 30.00132 * 3 2 1 32 32 H 1.09001 * 109.46416 * 150.00667 * 3 2 1 33 33 H 1.08994 * 109.47779 * 300.00149 * 4 3 2 34 34 H 1.09008 * 109.46942 * 60.00804 * 4 3 2 35 35 H 0.96998 * 119.99717 * 0.02562 * 5 4 3 36 36 H 1.09005 * 109.47260 * 299.99890 * 8 6 5 37 37 H 1.09001 * 109.47451 * 60.00104 * 8 6 5 38 38 H 0.97001 * 120.00293 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47795 * 60.00048 * 20 18 2 40 40 H 1.09003 * 109.47015 * 299.99877 * 20 18 2 41 41 H 1.09001 * 110.97106 * 97.46307 * 23 21 20 42 42 H 1.09007 * 110.96855 * 333.70166 * 23 21 20 43 43 H 1.09001 * 110.48978 * 266.11806 * 24 23 21 44 44 H 1.09000 * 110.49031 * 143.47236 * 24 23 21 45 45 H 0.97006 * 124.34688 * 179.62103 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1854 2.9790 -1.4426 6 6 3.5219 3.5627 -2.6098 7 8 3.2185 3.0377 -3.6601 8 6 4.2764 4.8672 -2.6098 9 16 4.5779 5.3898 -4.3163 10 6 5.4474 6.8946 -4.0264 11 1 5.6367 7.2227 -3.0150 12 6 5.8891 7.6584 -5.0979 13 7 5.6589 7.2584 -6.3306 14 14 6.8103 9.2542 -4.7905 15 1 6.9391 9.4776 -3.3281 16 1 8.1624 9.1703 -5.3989 17 1 6.0623 10.3829 -5.4003 18 6 2.1389 -1.1671 0.0005 19 8 3.3518 -1.1671 0.0001 20 6 1.3855 -2.4722 0.0005 21 6 2.3797 -3.6351 0.0005 22 1 3.0651 -3.5448 -0.8422 23 6 1.6266 -4.9824 -0.0627 24 6 2.5178 -5.8837 0.8229 25 6 3.2256 -4.9148 1.7444 26 8 3.7983 -5.2223 2.7682 27 7 3.1278 -3.6637 1.2628 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0415 0.9509 -1.9564 34 1 1.4999 1.8408 -1.9564 35 1 3.4284 3.3987 -0.6026 36 1 3.6882 5.6272 -2.0953 37 1 5.2290 4.7361 -2.0967 38 1 5.9679 7.7920 -7.0794 39 1 0.7591 -2.5303 -0.8897 40 1 0.7585 -2.5298 0.8903 41 1 1.5852 -5.3586 -1.0849 42 1 0.6253 -4.8897 0.3581 43 1 3.2396 -6.4253 0.2116 44 1 1.9057 -6.5787 1.3977 45 1 3.5039 -2.8803 1.6940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296008383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:37 Heat of formation + Delta-G solvation = -143.574392 kcal Electronic energy + Delta-G solvation = -26478.369247 eV Core-core repulsion = 22427.530428 eV Total energy + Delta-G solvation = -4050.838819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67218 -40.82795 -40.38862 -37.78798 -37.04649 -35.62685 -34.59502 -32.62353 -32.13269 -31.49740 -29.55478 -27.70476 -27.50788 -26.24534 -23.94796 -22.26758 -21.90854 -21.52083 -20.22283 -19.77908 -18.41073 -17.95425 -17.89703 -17.65333 -17.50073 -16.89214 -16.80563 -16.68351 -16.30145 -15.90633 -15.61813 -15.22242 -14.89326 -14.72004 -14.64991 -14.38255 -14.28853 -13.97374 -13.71277 -13.60867 -13.41071 -13.21342 -13.17253 -13.06045 -12.92258 -12.67867 -12.59606 -12.47318 -12.23771 -11.90807 -11.72889 -11.16858 -11.11770 -10.94772 -10.85387 -10.29203 -10.21057 -10.13027 -9.77848 -8.68324 -8.35925 -6.14179 1.23538 1.40900 1.43466 1.53918 1.56202 1.57216 1.59455 1.84295 2.25945 2.43027 2.44485 2.98432 3.30102 3.33326 3.52161 3.67141 3.80513 3.83201 3.98095 3.99643 4.23338 4.28083 4.31946 4.36338 4.37553 4.42622 4.49146 4.59698 4.71812 4.76169 4.84822 4.89556 4.90856 5.02535 5.12980 5.25287 5.27670 5.41353 5.48075 5.83301 6.06628 6.19107 6.32748 6.43562 7.05586 7.10293 7.18922 7.22036 8.73606 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.001594 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.273268 B =17561.930967 C =17879.008690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.613 5.613 3 C 0.113 3.887 4 C 0.114 3.886 5 N -0.711 5.711 6 C 0.534 3.466 7 O -0.566 6.566 8 C -0.129 4.129 9 S -0.153 6.153 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.273 1.273 18 C 0.500 3.500 19 O -0.581 6.581 20 C -0.140 4.140 21 C 0.136 3.864 22 H 0.076 0.924 23 C -0.113 4.113 24 C -0.151 4.151 25 C 0.502 3.498 26 O -0.600 6.600 27 N -0.719 5.719 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.418 0.582 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.271 0.729 39 H 0.147 0.853 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.773 -22.219 17.689 33.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.345 5.345 3 C -0.011 4.011 4 C -0.011 4.011 5 N -0.366 5.366 6 C 0.320 3.680 7 O -0.445 6.445 8 C -0.281 4.281 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.198 1.198 18 C 0.290 3.710 19 O -0.461 6.461 20 C -0.180 4.180 21 C 0.031 3.969 22 H 0.094 0.906 23 C -0.151 4.151 24 C -0.191 4.191 25 C 0.290 3.710 26 O -0.482 6.482 27 N -0.372 5.372 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.256 0.744 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -17.439 -23.331 16.249 33.354 hybrid contribution 1.640 2.297 1.423 3.161 sum -15.799 -21.034 17.672 31.691 Atomic orbital electron populations 1.22210 0.76256 1.05307 1.03786 1.47894 1.08828 1.04864 1.72946 1.21486 0.99130 0.86577 0.93946 1.21610 0.96117 0.84485 0.98922 1.45558 1.58650 1.24118 1.08232 1.20086 0.78499 0.85576 0.83812 1.90690 1.55232 1.65446 1.33084 1.23371 1.03729 0.97605 1.03357 1.85583 1.74091 1.28348 1.04524 1.23244 1.41959 1.07995 0.96201 0.89838 1.26136 0.96604 1.02440 0.93985 1.70187 1.45342 1.39993 0.99250 0.84893 0.77480 0.76412 0.79076 1.18034 1.20054 1.19791 1.21508 0.87872 0.86877 0.74754 1.90753 1.16117 1.87974 1.51282 1.22208 0.98924 0.88629 1.08258 1.21689 0.92952 0.96309 0.85906 0.90620 1.22781 0.99106 0.90383 1.02783 1.22408 1.00604 0.97903 0.98145 1.21783 0.78909 0.85394 0.84904 1.90718 1.47643 1.81869 1.27965 1.46588 1.56167 1.09110 1.25348 0.90375 0.90213 0.88263 0.86579 0.90347 0.94410 0.91400 0.74435 0.86692 0.87366 0.91973 0.83572 0.85578 0.86275 0.87098 0.86895 0.86622 0.75894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 10.24 127.77 1.31 1.45 16 2 N -0.61 -6.51 2.87 -846.76 -2.43 -8.94 16 3 C 0.11 1.53 5.52 86.38 0.48 2.01 16 4 C 0.11 2.48 6.00 86.38 0.52 3.00 16 5 N -0.71 -17.46 5.56 -463.05 -2.57 -20.03 16 6 C 0.53 19.70 7.85 87.66 0.69 20.38 16 7 O -0.57 -26.48 15.86 -3.02 -0.05 -26.53 16 8 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 9 S -0.15 -8.49 20.57 -56.49 -1.16 -9.66 16 10 C -0.55 -31.20 9.50 67.95 0.65 -30.56 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 14 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 C 0.50 6.95 7.48 87.66 0.66 7.61 16 19 O -0.58 -13.88 14.45 -3.05 -0.04 -13.92 16 20 C -0.14 -0.61 3.87 29.85 0.12 -0.50 16 21 C 0.14 1.15 3.02 45.44 0.14 1.29 16 22 H 0.08 0.91 7.99 -2.39 -0.02 0.89 16 23 C -0.11 -0.17 6.69 31.65 0.21 0.04 16 24 C -0.15 -1.18 6.86 30.59 0.21 -0.97 16 25 C 0.50 9.52 8.43 87.90 0.74 10.26 16 26 O -0.60 -17.90 18.03 -3.02 -0.05 -17.95 16 27 N -0.72 -11.47 5.60 -439.45 -2.46 -13.93 16 28 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.08 0.20 8.07 -2.39 -0.02 0.19 16 30 H 0.10 -0.23 6.44 -2.39 -0.02 -0.24 16 31 H 0.12 0.89 8.07 -2.39 -0.02 0.87 16 32 H 0.08 1.33 7.42 -2.39 -0.02 1.31 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.42 7.08 8.47 -92.71 -0.79 6.30 16 36 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 37 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 39 H 0.15 -0.28 7.40 -2.39 -0.02 -0.30 16 40 H 0.13 0.03 8.11 -2.39 -0.02 0.01 16 41 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.11 -0.31 7.91 -2.38 -0.02 -0.33 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.40 7.90 7.89 -92.70 -0.73 7.17 16 Total: -1.00 -95.48 393.17 -0.34 -95.82 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.49 Total: 14.68 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.61 Total: 10.57 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -7.18 Total: -98.64 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -0.15 Total: -58.40 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -95.48 -0.34 -95.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296008383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.759 kcal (2) G-P(sol) polarization free energy of solvation -95.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds