Wall clock time and date at job start Wed Apr 1 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00129 * 2 1 4 4 C 1.50698 * 109.47114 * 270.00303 * 3 2 1 5 5 H 1.07993 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00032 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99768 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00226 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47325 * 59.99783 * 8 6 4 10 10 H 1.48506 * 109.47212 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46776 * 299.99835 * 8 6 4 12 12 C 1.34774 * 119.99785 * 180.02562 * 2 1 3 13 13 O 1.21367 * 119.99768 * 183.62780 * 12 2 1 14 14 C 1.49322 * 120.00351 * 3.62095 * 12 2 1 15 15 O 1.21406 * 120.00103 * 354.17185 * 14 12 2 16 16 N 1.34771 * 120.00511 * 174.17086 * 14 12 2 17 17 C 1.40481 * 120.00684 * 180.02562 * 16 14 12 18 18 C 1.40345 * 126.11256 * 0.02562 * 17 16 14 19 19 N 1.30819 * 108.20799 * 179.97438 * 18 17 16 20 20 N 1.40051 * 108.36763 * 0.02562 * 19 18 17 21 21 C 1.46500 * 125.99036 * 179.97438 * 20 19 18 22 22 C 1.50696 * 109.47564 * 305.02553 * 21 20 19 23 23 C 1.38673 * 120.41762 * 90.00128 * 22 21 20 24 24 C 1.38631 * 118.41915 * 180.02562 * 23 22 21 25 25 C 1.38223 * 119.16159 * 359.97438 * 24 23 22 26 26 N 1.31857 * 120.76356 * 0.02562 * 25 24 23 27 27 C 1.31884 * 121.72832 * 359.97438 * 26 25 24 28 28 C 1.35224 * 108.01218 * 0.22703 * 20 19 18 29 29 H 1.09002 * 109.46976 * 263.99690 * 1 2 3 30 30 H 1.09001 * 109.47368 * 23.99411 * 1 2 3 31 31 H 1.08997 * 109.47124 * 143.99257 * 1 2 3 32 32 H 1.09002 * 109.47286 * 30.00128 * 3 2 1 33 33 H 1.08995 * 109.47075 * 149.99945 * 3 2 1 34 34 H 0.97006 * 119.99889 * 179.97438 * 7 6 4 35 35 H 0.97006 * 119.99817 * 359.97438 * 16 14 12 36 36 H 1.07999 * 125.89001 * 359.97438 * 18 17 16 37 37 H 1.09009 * 109.46911 * 185.02041 * 21 20 19 38 38 H 1.09003 * 109.47136 * 65.02932 * 21 20 19 39 39 H 1.08001 * 120.78990 * 0.29723 * 23 22 21 40 40 H 1.07997 * 120.41732 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.62047 * 179.97438 * 25 24 23 42 42 H 1.07991 * 119.61943 * 180.02562 * 27 26 25 43 43 H 1.08000 * 126.17833 * 179.77254 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2416 6 6 3.1260 2.8780 -1.6728 7 7 3.5525 3.6185 -0.6731 8 14 3.4366 3.4177 -3.4339 9 1 2.1389 3.5949 -4.1336 10 1 4.1793 4.7037 -3.4339 11 1 4.2394 2.3831 -4.1343 12 6 2.1388 -1.1672 -0.0005 13 8 3.3507 -1.1683 0.0660 14 6 1.3945 -2.4591 -0.0828 15 8 0.1811 -2.4642 -0.0425 16 7 2.0695 -3.6194 -0.2018 17 6 1.3693 -4.8348 -0.2797 18 6 -0.0252 -4.9895 -0.2468 19 7 -0.2974 -6.2654 -0.3443 20 7 0.9102 -6.9680 -0.4421 21 6 1.0534 -8.4206 -0.5673 22 6 0.3292 -9.0965 0.5683 23 6 -1.0045 -9.4528 0.4374 24 6 -1.6302 -10.0721 1.5083 25 6 -0.9087 -10.3127 2.6626 26 7 0.3587 -9.9600 2.7516 27 6 0.9859 -9.3692 1.7532 28 6 1.9209 -6.0709 -0.3949 29 1 -0.3633 -0.1075 1.0221 30 1 -0.3634 0.9389 -0.4179 31 1 -0.3633 -0.8313 -0.6041 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1383 0.5138 34 1 4.0293 4.4445 -0.8503 35 1 3.0390 -3.6154 -0.2344 36 1 -0.7487 -4.1928 -0.1565 37 1 2.1102 -8.6857 -0.5335 38 1 0.6271 -8.7473 -1.5158 39 1 -1.5419 -9.2565 -0.4786 40 1 -2.6679 -10.3637 1.4413 41 1 -1.3889 -10.7944 3.5015 42 1 2.0247 -9.0953 1.8629 43 1 2.9761 -6.2961 -0.4431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322757276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:50 Heat of formation + Delta-G solvation = 48.359670 kcal Electronic energy + Delta-G solvation = -28209.240903 eV Core-core repulsion = 24063.573770 eV Total energy + Delta-G solvation = -4145.667134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.56147 -41.54759 -40.98195 -39.42231 -37.18721 -36.01390 -35.06369 -34.60376 -33.12019 -31.95248 -30.43809 -29.95428 -27.87640 -27.32444 -26.09188 -24.58939 -24.02695 -23.67868 -22.26850 -21.73299 -20.54847 -18.77893 -18.71068 -18.47338 -17.98050 -17.65326 -17.39003 -17.05869 -16.82037 -16.63061 -16.34205 -15.99252 -15.73279 -15.28301 -15.08916 -14.82534 -14.60689 -14.29045 -14.15363 -13.99241 -13.92962 -13.81856 -13.63291 -13.45342 -13.17759 -12.93413 -12.62940 -12.57635 -12.21911 -12.16017 -11.93640 -11.78486 -11.70440 -10.83410 -10.64164 -10.61458 -10.31114 -10.29268 -10.09393 -9.58731 -8.79126 -8.23496 -6.38588 -0.02675 0.25729 0.31311 0.91093 1.26064 1.40305 1.43291 1.51284 1.70423 1.75372 2.32366 2.40444 2.69196 2.85667 3.06947 3.37108 3.40258 3.59090 3.77594 3.88865 3.99758 4.00342 4.10269 4.29952 4.47063 4.48566 4.53343 4.58100 4.66877 4.70919 4.81109 4.84833 4.90876 5.14523 5.15427 5.20058 5.24758 5.45096 5.68066 5.71339 5.72649 5.98963 6.00121 6.06053 6.42735 6.61934 6.67443 6.83237 6.96915 7.03628 7.32023 8.83845 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.001888 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.376550 B =14824.764510 C =14972.033531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.572 5.572 3 C 0.255 3.745 4 C -0.548 4.548 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.274 1.274 12 C 0.492 3.508 13 O -0.559 6.559 14 C 0.516 3.484 15 O -0.516 6.516 16 N -0.601 5.601 17 C -0.033 4.033 18 C 0.037 3.963 19 N -0.303 5.303 20 N -0.359 5.359 21 C 0.180 3.820 22 C -0.166 4.166 23 C -0.050 4.050 24 C -0.177 4.177 25 C 0.092 3.908 26 N -0.521 5.521 27 C 0.106 3.894 28 C 0.054 3.946 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.269 0.731 35 H 0.429 0.571 36 H 0.191 0.809 37 H 0.148 0.852 38 H 0.112 0.888 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.174 0.826 42 H 0.169 0.831 43 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 -30.354 0.546 31.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.303 5.303 3 C 0.134 3.866 4 C -0.587 4.587 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.199 1.199 12 C 0.274 3.726 13 O -0.439 6.439 14 C 0.298 3.702 15 O -0.392 6.392 16 N -0.248 5.248 17 C -0.137 4.137 18 C -0.149 4.149 19 N -0.125 5.125 20 N -0.143 5.143 21 C 0.060 3.940 22 C -0.169 4.169 23 C -0.077 4.077 24 C -0.197 4.197 25 C -0.065 4.065 26 N -0.229 5.229 27 C -0.051 4.051 28 C -0.095 4.095 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.268 0.732 36 H 0.207 0.793 37 H 0.166 0.834 38 H 0.130 0.870 39 H 0.165 0.835 40 H 0.177 0.823 41 H 0.191 0.809 42 H 0.187 0.813 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.032 -31.321 1.379 32.364 hybrid contribution 0.803 1.735 -1.201 2.258 sum -7.229 -29.586 0.177 30.457 Atomic orbital electron populations 1.22357 0.77207 1.04309 1.03106 1.48086 1.09038 1.05989 1.67157 1.19045 0.91600 0.79128 0.96811 1.21602 1.37463 1.07032 0.92587 0.92671 1.25839 0.94715 0.96190 1.02093 1.70038 1.38489 1.14724 1.33082 0.85442 0.78755 0.77493 0.78983 1.18847 1.20279 1.19902 1.20129 0.87347 0.85542 0.79569 1.90699 1.14612 1.87490 1.51123 1.19906 0.87269 0.84843 0.78135 1.90519 1.13544 1.86240 1.48945 1.42273 1.11191 1.02397 1.68893 1.17954 0.92009 0.85831 1.17915 1.24416 0.95344 0.94438 1.00742 1.77322 1.06238 1.04643 1.24342 1.48575 1.02976 1.06970 1.55745 1.20881 1.04152 0.71728 0.97222 1.20967 0.96156 1.02212 0.97587 1.21816 0.93645 0.92564 0.99651 1.22466 1.02746 1.00360 0.94102 1.23257 0.89758 0.95348 0.98098 1.67729 1.11564 1.12224 1.31425 1.23015 1.00933 0.93203 0.87995 1.22483 0.96818 0.86744 1.03444 0.91586 0.91293 0.87844 0.95023 0.96805 0.92216 0.73243 0.79265 0.83389 0.86951 0.83537 0.82301 0.80871 0.81342 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.59 9.55 127.77 1.22 3.81 16 2 N -0.57 -25.54 2.86 -852.89 -2.44 -27.98 16 3 C 0.25 13.65 5.16 85.63 0.44 14.10 16 4 C -0.55 -31.19 9.39 25.60 0.24 -30.95 16 5 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.64 5.46 84.65 0.46 1.10 16 7 N -0.92 -54.72 13.29 21.45 0.28 -54.44 16 8 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.49 20.87 7.73 87.23 0.67 21.55 16 13 O -0.56 -26.69 16.05 -3.30 -0.05 -26.74 16 14 C 0.52 17.56 7.74 87.23 0.68 18.23 16 15 O -0.52 -17.59 10.29 -3.42 -0.04 -17.62 16 16 N -0.60 -16.14 5.45 -305.42 -1.67 -17.80 16 17 C -0.03 -0.79 6.90 37.71 0.26 -0.52 16 18 C 0.04 0.99 10.84 85.36 0.93 1.91 16 19 N -0.30 -7.20 12.39 -56.72 -0.70 -7.90 16 20 N -0.36 -5.72 3.67 -351.12 -1.29 -7.01 16 21 C 0.18 1.40 6.66 85.63 0.57 1.97 16 22 C -0.17 -2.00 5.33 -19.77 -0.11 -2.10 16 23 C -0.05 -0.62 9.86 22.47 0.22 -0.39 16 24 C -0.18 -2.04 10.11 22.36 0.23 -1.81 16 25 C 0.09 1.28 11.18 84.69 0.95 2.23 16 26 N -0.52 -9.41 10.36 -195.85 -2.03 -11.44 16 27 C 0.11 1.52 10.86 84.67 0.92 2.44 16 28 C 0.05 0.83 11.49 83.62 0.96 1.79 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 31 H 0.10 3.55 5.35 -2.51 -0.01 3.54 16 32 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 33 H 0.01 0.83 7.37 -2.39 -0.02 0.81 16 34 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 35 H 0.43 10.09 8.31 -92.70 -0.77 9.32 16 36 H 0.19 5.59 5.92 -2.91 -0.02 5.58 16 37 H 0.15 0.03 8.02 -2.38 -0.02 0.01 16 38 H 0.11 0.59 8.10 -2.39 -0.02 0.57 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.17 1.65 8.06 -2.92 -0.02 1.63 16 43 H 0.23 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -78.22 377.20 3.03 -75.19 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.30 Total: 16.35 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: 8.64 Total: 33.34 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -7.84 Total: -126.57 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.09 Total: -44.36 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -78.22 3.03 -75.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322757276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.547 kcal (2) G-P(sol) polarization free energy of solvation -78.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds