Wall clock time and date at job start Wed Apr 1 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99948 * 2 1 4 4 C 1.50700 * 109.47049 * 270.00249 * 3 2 1 5 5 H 1.07998 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99927 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00301 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00027 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47345 * 60.00289 * 8 6 4 10 10 H 1.48496 * 109.47420 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47418 * 300.00247 * 8 6 4 12 12 C 1.34775 * 120.00009 * 180.02562 * 2 1 3 13 13 O 1.21364 * 119.99864 * 183.62672 * 12 2 1 14 14 C 1.49320 * 120.00171 * 3.62046 * 12 2 1 15 15 O 1.21407 * 120.00225 * 354.16849 * 14 12 2 16 16 N 1.34779 * 120.00127 * 174.16831 * 14 12 2 17 17 C 1.40478 * 120.00107 * 180.02562 * 16 14 12 18 18 C 1.40340 * 126.11505 * 0.02562 * 17 16 14 19 19 N 1.30828 * 108.21016 * 179.97438 * 18 17 16 20 20 N 1.40060 * 108.36292 * 0.02562 * 19 18 17 21 21 C 1.46502 * 125.98871 * 180.02562 * 20 19 18 22 22 C 1.50693 * 109.47277 * 304.96894 * 21 20 19 23 23 C 1.38234 * 119.61787 * 125.00215 * 22 21 20 24 24 C 1.38630 * 119.16089 * 179.97438 * 23 22 21 25 25 C 1.38679 * 118.42089 * 359.97438 * 24 23 22 26 26 C 1.38182 * 119.16128 * 0.02562 * 25 24 23 27 27 N 1.31851 * 119.62206 * 304.73126 * 22 21 20 28 28 C 1.35222 * 108.01445 * 359.97438 * 20 19 18 29 29 H 1.09005 * 109.46979 * 263.99312 * 1 2 3 30 30 H 1.08990 * 109.47280 * 23.99211 * 1 2 3 31 31 H 1.08997 * 109.47027 * 143.99635 * 1 2 3 32 32 H 1.09002 * 109.47097 * 29.99781 * 3 2 1 33 33 H 1.08996 * 109.47382 * 150.00170 * 3 2 1 34 34 H 0.96998 * 120.00148 * 179.97438 * 7 6 4 35 35 H 0.96996 * 119.99760 * 0.02562 * 16 14 12 36 36 H 1.07998 * 125.89494 * 0.22700 * 18 17 16 37 37 H 1.08997 * 109.47447 * 64.97380 * 21 20 19 38 38 H 1.09006 * 109.46850 * 184.96977 * 21 20 19 39 39 H 1.07995 * 120.41797 * 359.95739 * 23 22 21 40 40 H 1.08000 * 120.78652 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.41625 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.61262 * 179.97438 * 26 25 24 43 43 H 1.07992 * 126.18156 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6182 -0.6732 8 14 3.4378 3.4169 -3.4339 9 1 2.1405 3.5937 -4.1347 10 1 4.1801 4.7030 -3.4340 11 1 4.2412 2.3822 -4.1334 12 6 2.1389 -1.1672 -0.0005 13 8 3.3507 -1.1682 0.0660 14 6 1.3946 -2.4590 -0.0828 15 8 0.1812 -2.4642 -0.0424 16 7 2.0697 -3.6194 -0.2018 17 6 1.3695 -4.8347 -0.2797 18 6 -0.0250 -4.9895 -0.2468 19 7 -0.2972 -6.2654 -0.3443 20 7 0.9105 -6.9680 -0.4421 21 6 1.0537 -8.4205 -0.5684 22 6 0.3302 -9.0972 0.5671 23 6 -0.6298 -10.0531 0.2924 24 6 -1.2891 -10.6701 1.3443 25 6 -0.9564 -10.3012 2.6391 26 6 0.0141 -9.3375 2.8363 27 7 0.6240 -8.7746 1.8113 28 6 1.9210 -6.0704 -0.4007 29 1 -0.3633 -0.1075 1.0221 30 1 -0.3633 0.9388 -0.4178 31 1 -0.3633 -0.8313 -0.6041 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5138 34 1 4.0301 4.4441 -0.8505 35 1 3.0391 -3.6154 -0.2337 36 1 -0.7487 -4.1925 -0.1603 37 1 0.6269 -8.7466 -1.5169 38 1 2.1105 -8.6856 -0.5353 39 1 -0.8634 -10.3158 -0.7287 40 1 -2.0434 -11.4207 1.1598 41 1 -1.4495 -10.7615 3.4825 42 1 0.2786 -9.0444 3.8416 43 1 2.9759 -6.2951 -0.4542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327187983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:46 Heat of formation + Delta-G solvation = 49.220847 kcal Electronic energy + Delta-G solvation = -28223.129175 eV Core-core repulsion = 24077.499385 eV Total energy + Delta-G solvation = -4145.629790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54843 -41.54336 -40.96453 -39.41478 -37.17825 -35.91307 -34.80952 -34.57499 -33.32664 -32.00700 -30.45263 -29.96501 -27.96420 -27.41829 -26.10253 -24.49544 -24.04355 -23.65721 -22.26896 -21.73917 -20.55251 -18.79027 -18.71226 -18.49118 -17.86227 -17.66294 -17.07508 -17.04582 -16.81251 -16.57227 -16.47234 -16.02172 -15.86783 -15.22216 -15.16465 -14.86279 -14.61699 -14.25774 -14.15018 -13.95641 -13.90181 -13.81491 -13.56200 -13.40616 -13.15822 -12.92955 -12.68595 -12.58063 -12.21650 -12.15817 -11.92721 -11.82043 -11.70095 -10.83730 -10.63924 -10.53719 -10.34249 -10.29243 -10.01632 -9.58538 -8.77882 -8.23186 -6.38292 0.04430 0.26511 0.34778 0.91734 1.24578 1.40307 1.43525 1.51382 1.67708 1.75422 2.32638 2.40771 2.69276 2.82335 3.07184 3.19758 3.37902 3.68298 3.80618 3.92326 4.02769 4.15066 4.20635 4.29034 4.40689 4.47352 4.52795 4.63930 4.65253 4.71184 4.79540 4.84588 4.91001 5.15567 5.16912 5.20763 5.25124 5.45426 5.68631 5.73067 5.74437 5.98896 6.00377 6.06325 6.42793 6.62441 6.67656 6.83371 7.00488 7.03731 7.32267 8.84201 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.001895 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.316765 B =14771.020067 C =15003.001757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.572 5.572 3 C 0.254 3.746 4 C -0.549 4.549 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.274 1.274 12 C 0.493 3.507 13 O -0.559 6.559 14 C 0.516 3.484 15 O -0.516 6.516 16 N -0.601 5.601 17 C -0.032 4.032 18 C 0.038 3.962 19 N -0.305 5.305 20 N -0.351 5.351 21 C 0.184 3.816 22 C 0.089 3.911 23 C -0.156 4.156 24 C -0.079 4.079 25 C -0.168 4.168 26 C 0.078 3.922 27 N -0.503 5.503 28 C 0.057 3.943 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.269 0.731 35 H 0.428 0.572 36 H 0.192 0.808 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -32.650 1.939 33.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.302 5.302 3 C 0.134 3.866 4 C -0.587 4.587 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.199 1.199 12 C 0.275 3.725 13 O -0.439 6.439 14 C 0.298 3.702 15 O -0.393 6.393 16 N -0.247 5.247 17 C -0.136 4.136 18 C -0.148 4.148 19 N -0.128 5.128 20 N -0.134 5.134 21 C 0.063 3.937 22 C -0.050 4.050 23 C -0.176 4.176 24 C -0.105 4.105 25 C -0.187 4.187 26 C -0.079 4.079 27 N -0.213 5.213 28 C -0.092 4.092 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.267 0.733 36 H 0.208 0.792 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.595 -32.814 2.150 33.989 hybrid contribution 0.767 0.963 -0.461 1.314 sum -7.829 -31.851 1.690 32.842 Atomic orbital electron populations 1.22356 0.77201 1.04314 1.03108 1.48085 1.09039 1.05958 1.67154 1.19053 0.91605 0.79102 0.96835 1.21604 1.37476 1.07051 0.92579 0.92684 1.25835 0.94696 0.96174 1.02111 1.70034 1.38472 1.14735 1.33087 0.85439 0.78761 0.77487 0.78968 1.18830 1.20236 1.19940 1.20103 0.87328 0.85509 0.79568 1.90696 1.14615 1.87482 1.51132 1.19921 0.87281 0.84821 0.78148 1.90514 1.13540 1.86238 1.48999 1.42265 1.11144 1.02394 1.68895 1.17874 0.91969 0.85741 1.18036 1.24387 0.95291 0.94330 1.00772 1.77319 1.06158 1.04766 1.24516 1.48257 1.02998 1.06733 1.55444 1.20960 1.04026 0.72140 0.96537 1.21401 0.96077 0.95240 0.92242 1.22261 0.95892 0.97103 1.02304 1.22022 0.98061 0.98315 0.92124 1.22515 0.98450 0.98405 0.99374 1.23062 0.93335 0.93328 0.98146 1.67357 1.27726 1.26006 1.00207 1.22381 0.96606 0.86876 1.03314 0.91591 0.91227 0.87888 0.94970 0.96807 0.92211 0.73316 0.79154 0.85419 0.84037 0.82061 0.81741 0.82206 0.81931 0.76451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.65 9.55 127.77 1.22 3.87 16 2 N -0.57 -26.04 2.86 -852.89 -2.44 -28.48 16 3 C 0.25 13.82 5.16 85.63 0.44 14.26 16 4 C -0.55 -31.54 9.39 25.60 0.24 -31.30 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.66 5.46 84.65 0.46 1.12 16 7 N -0.92 -55.12 13.29 21.45 0.28 -54.84 16 8 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.49 21.50 7.73 87.23 0.67 22.17 16 13 O -0.56 -27.35 16.05 -3.29 -0.05 -27.41 16 14 C 0.52 18.39 7.74 87.23 0.68 19.07 16 15 O -0.52 -18.41 10.29 -3.42 -0.04 -18.44 16 16 N -0.60 -17.48 5.45 -305.42 -1.67 -19.14 16 17 C -0.03 -0.86 6.90 37.71 0.26 -0.60 16 18 C 0.04 1.14 10.84 85.35 0.93 2.06 16 19 N -0.30 -8.35 12.39 -56.72 -0.70 -9.05 16 20 N -0.35 -7.05 3.63 -351.13 -1.28 -8.33 16 21 C 0.18 2.15 6.89 85.63 0.59 2.74 16 22 C 0.09 1.37 6.24 42.55 0.27 1.64 16 23 C -0.16 -1.69 9.71 22.36 0.22 -1.47 16 24 C -0.08 -0.73 10.18 22.47 0.23 -0.51 16 25 C -0.17 -1.80 10.11 22.36 0.23 -1.58 16 26 C 0.08 1.24 11.18 84.67 0.95 2.19 16 27 N -0.50 -10.06 10.22 -183.89 -1.88 -11.94 16 28 C 0.06 1.11 11.49 83.62 0.96 2.07 16 29 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 31 H 0.10 3.64 5.35 -2.51 -0.01 3.63 16 32 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 33 H 0.01 0.84 7.37 -2.39 -0.02 0.82 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.43 11.05 8.31 -92.71 -0.77 10.28 16 36 H 0.19 6.06 5.92 -2.91 -0.02 6.05 16 37 H 0.13 0.83 7.87 -2.39 -0.02 0.82 16 38 H 0.14 0.82 8.07 -2.38 -0.02 0.80 16 39 H 0.16 0.82 7.95 -2.91 -0.02 0.79 16 40 H 0.17 0.50 8.06 -2.91 -0.02 0.47 16 41 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.22 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -79.85 377.04 2.89 -76.95 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.30 Total: 18.45 kcal Atomic # 6 Polarization: 27.41 SS G_CDS: 8.33 Total: 35.74 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -7.68 Total: -131.78 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.09 Total: -45.85 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -79.85 2.89 -76.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327187983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.175 kcal (2) G-P(sol) polarization free energy of solvation -79.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds