Wall clock time and date at job start Wed Apr 1 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00433 * 2 1 4 4 C 1.50701 * 109.47516 * 89.99543 * 3 2 1 5 5 C 1.38232 * 119.61300 * 95.02141 * 4 3 2 6 6 C 1.38629 * 119.15792 * 179.74767 * 5 4 3 7 7 C 1.38678 * 118.42015 * 0.47777 * 6 5 4 8 8 C 1.38184 * 119.16263 * 359.50197 * 7 6 5 9 9 N 1.31847 * 119.62085 * 275.00692 * 4 3 2 10 10 C 1.34783 * 120.00224 * 179.97438 * 2 1 3 11 11 O 1.21358 * 120.00482 * 185.33893 * 10 2 1 12 12 C 1.49348 * 119.99601 * 5.33394 * 10 2 1 13 13 O 1.21390 * 119.99828 * 5.98164 * 12 10 2 14 14 N 1.34772 * 119.99994 * 185.97588 * 12 10 2 15 15 C 1.39928 * 120.00128 * 180.02562 * 14 12 10 16 16 C 1.40464 * 125.98023 * 359.70980 * 15 14 12 17 17 C 1.35215 * 107.87019 * 179.86740 * 16 15 14 18 18 N 1.34988 * 107.87021 * 0.40059 * 17 16 15 19 19 C 1.46503 * 125.96786 * 179.73098 * 18 17 16 20 20 C 1.50701 * 109.47097 * 124.99947 * 19 18 17 21 21 H 1.08000 * 120.00327 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99670 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00069 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99784 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47289 * 89.99773 * 24 22 20 26 26 H 1.48495 * 109.47406 * 209.99839 * 24 22 20 27 27 H 1.48501 * 109.47415 * 330.00066 * 24 22 20 28 28 N 1.31266 * 125.98331 * 180.02562 * 15 14 12 29 29 H 1.08993 * 109.46996 * 95.25262 * 1 2 3 30 30 H 1.09000 * 109.46904 * 215.25765 * 1 2 3 31 31 H 1.08999 * 109.46540 * 335.25215 * 1 2 3 32 32 H 1.09003 * 109.47039 * 329.99901 * 3 2 1 33 33 H 1.08994 * 109.47379 * 210.00263 * 3 2 1 34 34 H 1.07993 * 120.42497 * 359.96136 * 5 4 3 35 35 H 1.08000 * 120.79306 * 180.23330 * 6 5 4 36 36 H 1.07995 * 120.42246 * 179.77870 * 7 6 5 37 37 H 1.07996 * 119.61800 * 180.25218 * 8 7 6 38 38 H 0.96999 * 119.99725 * 0.02562 * 14 12 10 39 39 H 1.08000 * 126.06443 * 0.02646 * 16 15 14 40 40 H 1.07997 * 126.06721 * 180.11308 * 17 16 15 41 41 H 1.09000 * 109.46815 * 244.99694 * 19 18 17 42 42 H 1.08994 * 109.47250 * 4.99796 * 19 18 17 43 43 H 0.97008 * 120.00025 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 6 3.6489 1.3883 2.0298 6 6 3.8721 1.7978 3.3353 7 6 2.8713 2.5039 3.9857 8 6 1.6974 2.7829 3.3123 9 7 1.5214 2.3813 2.0684 10 6 2.1390 -1.1672 0.0005 11 8 3.3486 -1.1695 0.0983 12 6 1.3970 -2.4578 -0.1191 13 8 0.2008 -2.4534 -0.3257 14 7 2.0556 -3.6274 0.0021 15 6 1.3606 -4.8367 -0.1106 16 6 -0.0176 -4.9779 -0.3422 17 6 -0.2974 -6.3000 -0.3875 18 7 0.8541 -6.9743 -0.1838 19 6 1.0033 -8.4313 -0.1479 20 6 2.0514 -8.8537 -1.1450 21 1 2.5556 -8.1112 -1.7457 22 6 2.3657 -10.1882 -1.2911 23 7 1.7513 -11.0923 -0.5600 24 14 3.6643 -10.7118 -2.5275 25 1 4.9962 -10.7256 -1.8708 26 1 3.3473 -12.0718 -3.0324 27 1 3.6821 -9.7542 -3.6624 28 7 1.8814 -6.0376 -0.0125 29 1 -0.3633 -0.0941 -1.0233 30 1 -0.3633 -0.8392 0.5932 31 1 -0.3632 0.9333 0.4302 32 1 1.6085 2.0284 -0.5139 33 1 3.1499 1.1383 -0.5138 34 1 4.4045 0.8328 1.4943 35 1 4.8016 1.5690 3.8353 36 1 3.0094 2.8355 5.0042 37 1 0.9148 3.3359 3.8104 38 1 3.0114 -3.6309 0.1674 39 1 -0.7274 -4.1732 -0.4651 40 1 -1.2704 -6.7387 -0.5523 41 1 1.3074 -8.7408 0.8520 42 1 0.0522 -8.9002 -0.3999 43 1 1.9728 -12.0312 -0.6626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337767708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:32 Heat of formation + Delta-G solvation = 71.857211 kcal Electronic energy + Delta-G solvation = -28383.219230 eV Core-core repulsion = 24238.571027 eV Total energy + Delta-G solvation = -4144.648204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28832 -40.63189 -40.07864 -38.49863 -36.40966 -34.78596 -33.37491 -32.84782 -32.27439 -31.04862 -29.42698 -28.21783 -27.31668 -26.60245 -24.59182 -23.84789 -22.96589 -22.32260 -21.07419 -20.06792 -19.47517 -17.77698 -17.47596 -17.14247 -16.68707 -16.61738 -16.40339 -16.21366 -15.75530 -15.61368 -15.14469 -14.68602 -14.48310 -14.24579 -13.93486 -13.76313 -13.61793 -13.31858 -13.10315 -13.00268 -12.65370 -12.42705 -12.31026 -12.23370 -12.09516 -11.86872 -11.39979 -11.06115 -10.89185 -10.52907 -10.28255 -10.24198 -10.04112 -9.93509 -9.59000 -9.54971 -9.28691 -9.11934 -8.65635 -8.23769 -7.58917 -6.26741 -4.31892 0.64772 0.91870 1.17435 2.02956 2.63498 2.96994 3.04897 3.23355 3.29198 3.34347 3.50500 3.64311 3.74635 3.87701 4.24453 4.31382 4.36768 4.49859 4.70689 4.74571 4.94779 5.03125 5.08237 5.08691 5.27999 5.40228 5.41314 5.47810 5.68487 5.75085 5.78741 5.83595 5.95077 6.10943 6.31259 6.33391 6.40998 6.74664 6.78929 7.00373 7.22189 7.27782 7.55647 7.59218 7.67795 7.83814 7.94351 7.96703 8.53086 8.76718 9.33997 10.82036 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.002011 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.904629 B =13917.191936 C =14328.302517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.580 5.580 3 C 0.166 3.834 4 C 0.102 3.898 5 C -0.145 4.145 6 C -0.078 4.078 7 C -0.169 4.169 8 C 0.095 3.905 9 N -0.473 5.473 10 C 0.515 3.485 11 O -0.515 6.515 12 C 0.513 3.487 13 O -0.493 6.493 14 N -0.598 5.598 15 C 0.251 3.749 16 C -0.285 4.285 17 C 0.053 3.947 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.530 4.530 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.295 5.295 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.156 0.844 38 H 0.422 0.578 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 27.867 5.876 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.313 5.313 3 C 0.043 3.957 4 C -0.037 4.037 5 C -0.165 4.165 6 C -0.104 4.104 7 C -0.189 4.189 8 C -0.062 4.062 9 N -0.183 5.183 10 C 0.297 3.703 11 O -0.391 6.391 12 C 0.293 3.707 13 O -0.366 6.366 14 N -0.247 5.247 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.568 4.568 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.126 5.126 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.260 0.740 39 H 0.179 0.821 40 H 0.188 0.812 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.218 27.061 5.560 27.653 hybrid contribution 1.208 -0.213 -0.061 1.228 sum -0.011 26.849 5.499 27.406 Atomic orbital electron populations 1.22258 0.76748 1.04073 1.03508 1.47601 1.08633 1.04210 1.70872 1.20412 0.99190 0.84813 0.91246 1.21535 0.90316 0.94773 0.97066 1.22162 0.98775 0.99696 0.95891 1.21667 0.99250 0.95083 0.94433 1.22202 0.95139 1.00118 1.01490 1.22741 0.96401 0.96763 0.90310 1.67450 1.31545 1.09921 1.09338 1.19993 0.87342 0.84909 0.78057 1.90756 1.13467 1.87048 1.47804 1.19824 0.87368 0.84416 0.79124 1.90685 1.13936 1.86462 1.45502 1.42001 1.12790 1.01995 1.67879 1.19006 0.91440 0.85509 1.04221 1.21514 0.94496 0.96357 1.19296 1.22584 0.92900 0.92279 1.01903 1.49169 1.02911 1.07862 1.49713 1.19797 0.99537 0.67291 0.99388 1.21247 1.21488 0.92753 1.21318 0.91253 1.24946 0.96672 0.96078 0.96380 1.69916 1.41847 1.01719 1.39809 0.86312 0.81325 0.77767 0.81019 1.20295 1.20977 1.19697 1.77402 1.13117 0.95222 1.26894 0.91449 0.88900 0.90678 0.87876 0.87794 0.83993 0.84654 0.84743 0.82645 0.74050 0.82130 0.81244 0.93572 0.92367 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 9.23 59.85 0.55 1.25 16 2 N -0.58 -5.98 2.86 -183.51 -0.52 -6.50 16 3 C 0.17 1.41 5.65 -5.19 -0.03 1.38 16 4 C 0.10 0.96 6.36 -82.59 -0.53 0.44 16 5 C -0.14 -1.30 9.72 -39.44 -0.38 -1.69 16 6 C -0.08 -0.59 10.18 -39.27 -0.40 -0.99 16 7 C -0.17 -1.15 10.11 -39.44 -0.40 -1.55 16 8 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 9 N -0.47 -4.52 10.27 -9.47 -0.10 -4.62 16 10 C 0.51 6.52 7.72 -11.63 -0.09 6.43 16 11 O -0.52 -7.06 15.86 5.49 0.09 -6.97 16 12 C 0.51 7.49 7.66 -11.64 -0.09 7.40 16 13 O -0.49 -7.52 10.50 5.46 0.06 -7.47 16 14 N -0.60 -9.75 5.43 -11.58 -0.06 -9.81 16 15 C 0.25 4.97 8.10 -154.56 -1.25 3.72 16 16 C -0.29 -5.37 9.60 -39.82 -0.38 -5.75 16 17 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 18 N -0.31 -7.16 3.67 -62.56 -0.23 -7.39 16 19 C 0.26 6.43 6.26 -5.19 -0.03 6.40 16 20 C -0.53 -14.62 9.24 -34.44 -0.32 -14.93 16 21 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 24 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 N -0.30 -6.75 12.42 31.41 0.39 -6.36 16 29 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 30 H 0.09 1.01 5.95 -51.93 -0.31 0.70 16 31 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 32 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.10 0.83 7.40 -51.93 -0.38 0.44 16 34 H 0.14 1.26 7.80 -52.49 -0.41 0.85 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.42 6.32 8.31 -40.82 -0.34 5.98 16 39 H 0.16 2.81 5.91 -52.49 -0.31 2.50 16 40 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -32.51 377.22 -7.91 -40.41 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.09 Total: 6.02 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -3.84 Total: 5.08 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.21 Total: -59.07 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.14 Total: -14.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.51 -7.91 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337767708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.267 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds