Wall clock time and date at job start Wed Apr 1 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40293 * 126.85741 * 2 1 4 4 N 1.28722 * 108.20212 * 180.26804 * 3 2 1 5 5 C 1.33250 * 110.01119 * 359.74143 * 4 3 2 6 6 C 1.35894 * 108.85917 * 0.02562 * 5 4 3 7 7 N 1.39270 * 126.68489 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00362 * 0.02562 * 7 6 5 9 9 O 1.21395 * 119.99674 * 0.02562 * 8 7 6 10 10 C 1.49315 * 120.00339 * 180.02562 * 8 7 6 11 11 O 1.21359 * 120.00119 * 359.97438 * 10 8 7 12 12 N 1.34784 * 119.99920 * 179.97438 * 10 8 7 13 13 C 1.46494 * 119.99635 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47431 * 324.99476 * 13 12 10 15 15 C 1.53003 * 109.47057 * 205.00313 * 13 12 10 16 16 C 1.50700 * 109.47468 * 64.99659 * 15 13 12 17 17 H 1.08001 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00214 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00022 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47316 * 60.00159 * 20 18 16 22 22 H 1.48503 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47108 * 300.00044 * 20 18 16 24 24 C 1.50696 * 109.47226 * 85.00243 * 13 12 10 25 25 C 1.38232 * 120.00207 * 39.72661 * 24 13 12 26 26 C 1.38237 * 120.00415 * 179.81572 * 25 24 13 27 27 C 1.38239 * 119.99277 * 0.38823 * 26 25 24 28 28 C 1.38232 * 120.00347 * 359.86052 * 27 26 25 29 29 C 1.38231 * 119.99992 * 359.95513 * 28 27 26 30 30 H 1.08996 * 109.47117 * 270.17721 * 1 2 3 31 31 H 1.09007 * 109.46733 * 30.17017 * 1 2 3 32 32 H 1.08996 * 109.47764 * 150.16738 * 1 2 3 33 33 H 1.08003 * 125.57331 * 179.97438 * 5 4 3 34 34 H 0.97008 * 120.00302 * 180.02562 * 7 6 5 35 35 H 0.96995 * 120.00015 * 359.72361 * 12 10 8 36 36 H 1.08999 * 109.47427 * 185.00341 * 15 13 12 37 37 H 1.09010 * 109.47093 * 305.00188 * 15 13 12 38 38 H 0.96991 * 120.00183 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.99607 * 359.97438 * 25 24 13 40 40 H 1.07995 * 120.00013 * 180.22954 * 26 25 24 41 41 H 1.08003 * 119.99238 * 179.83680 * 27 26 25 42 42 H 1.08000 * 119.99501 * 179.97438 * 28 27 26 43 43 H 1.08002 * 119.99670 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3065 1.1225 0.0000 4 7 3.5261 0.7108 -0.0057 5 6 3.5577 -0.6213 -0.0039 6 6 2.2824 -1.0909 0.0028 7 7 1.8876 -2.4265 0.0071 8 6 2.8158 -3.4037 0.0052 9 8 3.9961 -3.1196 0.0002 10 6 2.3925 -4.8355 0.0093 11 8 1.2126 -5.1195 0.0148 12 7 3.3208 -5.8127 0.0069 13 6 2.9055 -7.2175 0.0114 14 1 1.9979 -7.3262 0.6053 15 6 4.0173 -8.0761 0.6176 16 6 4.2008 -7.7099 2.0679 17 1 3.5855 -6.9418 2.5128 18 6 5.1540 -8.3553 2.8267 19 7 5.9035 -9.2903 2.2847 20 14 5.3809 -7.9018 4.6245 21 1 4.1134 -8.1432 5.3597 22 1 6.4610 -8.7343 5.2125 23 1 5.7490 -6.4672 4.7305 24 6 2.6378 -7.6668 -1.4019 25 6 3.4648 -7.2497 -2.4281 26 6 3.2216 -7.6649 -3.7240 27 6 2.1466 -8.4908 -3.9948 28 6 1.3166 -8.9037 -2.9694 29 6 1.5621 -8.4916 -1.6730 30 1 -0.3633 0.0032 1.0276 31 1 -0.3633 0.8885 -0.5165 32 1 -0.3634 -0.8914 -0.5112 33 1 4.4507 -1.2287 -0.0081 34 1 0.9445 -2.6535 0.0115 35 1 4.2638 -5.5858 -0.0016 36 1 3.7465 -9.1291 0.5402 37 1 4.9479 -7.8997 0.0779 38 1 6.5739 -9.7446 2.8186 39 1 4.3024 -6.6015 -2.2169 40 1 3.8698 -7.3420 -4.5251 41 1 1.9550 -8.8130 -5.0077 42 1 0.4766 -9.5486 -3.1812 43 1 0.9134 -8.8139 -0.8719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347349167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:27 Heat of formation + Delta-G solvation = 63.929505 kcal Electronic energy + Delta-G solvation = -29167.605943 eV Core-core repulsion = 25022.613968 eV Total energy + Delta-G solvation = -4144.991975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.38833 -40.74336 -39.34185 -38.29134 -36.11994 -35.37350 -34.18223 -32.85647 -31.35759 -30.59665 -30.02679 -28.97348 -27.93678 -25.97166 -24.60145 -22.73889 -22.44385 -22.10486 -21.79518 -20.40379 -19.99680 -18.91675 -17.72795 -17.09293 -16.89234 -16.64999 -16.27337 -16.03184 -15.70136 -15.37243 -14.91767 -14.63189 -14.52009 -14.26728 -13.99773 -13.60836 -13.60022 -13.34417 -13.14590 -12.87778 -12.66877 -12.20181 -12.15578 -11.78437 -11.75877 -11.56584 -11.26115 -11.23202 -11.06637 -10.81243 -10.73433 -10.58152 -10.06137 -9.92446 -9.74470 -9.43631 -8.87344 -8.68438 -8.64855 -8.53074 -8.34751 -6.16273 -4.21196 0.75532 1.39212 1.54279 1.63919 1.67248 2.37301 2.47379 3.17194 3.25833 3.31152 3.33527 3.43143 4.05775 4.08650 4.34082 4.43349 4.63276 4.65226 4.88540 4.91005 5.12716 5.14596 5.16251 5.20924 5.23406 5.29697 5.39166 5.75546 5.78788 5.93950 6.10978 6.18275 6.26595 6.29272 6.37160 6.43388 6.58437 6.71132 6.73258 6.91445 7.20003 7.26267 7.36466 7.45338 7.66116 7.78340 8.03084 8.10439 8.13875 8.83406 9.44985 10.94008 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.003706 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.196143 B = 7554.060745 C =10161.760585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.387 5.387 3 N -0.073 5.073 4 N -0.222 5.222 5 C -0.081 4.081 6 C 0.280 3.720 7 N -0.621 5.621 8 C 0.519 3.481 9 O -0.476 6.476 10 C 0.513 3.487 11 O -0.526 6.526 12 N -0.656 5.656 13 C 0.183 3.817 14 H 0.095 0.905 15 C 0.024 3.976 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.078 4.078 25 C -0.109 4.109 26 C -0.123 4.123 27 C -0.131 4.131 28 C -0.122 4.122 29 C -0.106 4.106 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.210 0.790 34 H 0.426 0.574 35 H 0.416 0.584 36 H 0.040 0.960 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 9.647 -9.393 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.181 5.181 3 N -0.052 5.052 4 N -0.091 5.091 5 C -0.241 4.241 6 C 0.052 3.948 7 N -0.272 5.272 8 C 0.300 3.700 9 O -0.346 6.346 10 C 0.292 3.708 11 O -0.403 6.403 12 N -0.306 5.306 13 C 0.080 3.920 14 H 0.113 0.887 15 C -0.014 4.014 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.079 4.079 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.150 4.150 28 C -0.140 4.140 29 C -0.124 4.124 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.226 0.774 34 H 0.264 0.736 35 H 0.254 0.746 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.302 10.950 -9.339 18.299 hybrid contribution -0.185 -0.976 1.032 1.433 sum -11.487 9.975 -8.307 17.333 Atomic orbital electron populations 1.22091 0.73304 1.05448 1.04556 1.50601 1.08328 1.04171 1.55039 1.82055 0.93794 1.03867 1.25491 1.74231 1.12661 1.11542 1.10678 1.23622 0.96579 0.90521 1.13388 1.18784 0.91640 0.81068 1.03290 1.42474 1.12364 1.00924 1.71482 1.20729 0.85449 0.87113 0.76677 1.90729 1.16744 1.83035 1.44056 1.19297 0.86826 0.85006 0.79722 1.90758 1.16615 1.83193 1.49755 1.45876 1.10289 1.05884 1.68567 1.20513 1.02018 0.78414 0.91059 0.88739 1.19430 0.91514 0.94765 0.95656 1.21049 1.19473 1.21259 0.94844 0.92458 1.24960 0.95571 0.94794 0.98518 1.69931 1.21936 1.24231 1.36636 0.86653 0.77859 0.78616 0.84919 1.20192 1.21187 1.20091 1.20432 0.94564 0.96922 0.95957 1.20965 0.99131 1.00107 0.92479 1.21069 0.97860 0.98617 0.96580 1.21041 0.96008 0.99124 0.98790 1.21056 0.99651 1.00336 0.93001 1.21005 0.96977 0.97763 0.96662 0.89435 0.87852 0.89226 0.77363 0.73601 0.74640 0.94177 0.95340 0.92642 0.86353 0.86538 0.86699 0.86453 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.39 59.85 0.68 1.15 16 2 N -0.39 -4.13 4.09 -67.02 -0.27 -4.40 16 3 N -0.07 -0.99 13.81 60.35 0.83 -0.16 16 4 N -0.22 -3.33 12.31 30.25 0.37 -2.96 16 5 C -0.08 -1.14 10.76 -17.78 -0.19 -1.33 16 6 C 0.28 3.39 7.75 -152.47 -1.18 2.21 16 7 N -0.62 -6.84 5.41 -11.74 -0.06 -6.90 16 8 C 0.52 7.04 7.85 -11.65 -0.09 6.95 16 9 O -0.48 -7.19 13.64 5.46 0.07 -7.12 16 10 C 0.51 7.86 7.84 -11.65 -0.09 7.77 16 11 O -0.53 -8.64 16.14 5.49 0.09 -8.55 16 12 N -0.66 -10.86 4.01 -55.41 -0.22 -11.08 16 13 C 0.18 3.34 2.12 -69.09 -0.15 3.20 16 14 H 0.09 1.82 7.44 -51.93 -0.39 1.43 16 15 C 0.02 0.53 4.50 -27.88 -0.13 0.40 16 16 C -0.53 -13.32 8.84 -34.44 -0.30 -13.63 16 17 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 20 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.08 -1.29 4.91 -104.63 -0.51 -1.80 16 25 C -0.11 -1.67 9.33 -39.58 -0.37 -2.04 16 26 C -0.12 -1.67 10.05 -39.58 -0.40 -2.06 16 27 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 28 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 29 C -0.11 -1.62 9.67 -39.58 -0.38 -2.00 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.30 7.65 -51.93 -0.40 -0.10 16 33 H 0.21 2.97 5.83 -52.48 -0.31 2.66 16 34 H 0.43 3.67 7.63 -40.82 -0.31 3.35 16 35 H 0.42 6.80 8.07 -40.82 -0.33 6.47 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.12 1.73 7.71 -52.48 -0.40 1.33 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -31.42 379.25 -6.82 -38.24 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.06 Total: 9.36 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -4.01 Total: -3.68 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 1.38 Total: -49.53 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.16 Total: -15.67 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.42 -6.82 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347349167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.173 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds