Wall clock time and date at job start Wed Apr 1 2020 01:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40293 * 126.85741 * 2 1 4 4 N 1.28722 * 108.20212 * 180.26804 * 3 2 1 5 5 C 1.33250 * 110.01119 * 359.74143 * 4 3 2 6 6 C 1.35894 * 108.85917 * 0.02562 * 5 4 3 7 7 N 1.39270 * 126.68489 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00362 * 0.02562 * 7 6 5 9 9 O 1.21395 * 119.99674 * 0.02562 * 8 7 6 10 10 C 1.49315 * 120.00339 * 180.02562 * 8 7 6 11 11 O 1.21359 * 120.00119 * 359.97438 * 10 8 7 12 12 N 1.34784 * 119.99920 * 179.97438 * 10 8 7 13 13 C 1.46494 * 119.99635 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47431 * 324.99476 * 13 12 10 15 15 C 1.53003 * 109.47057 * 205.00313 * 13 12 10 16 16 C 1.50700 * 109.47468 * 64.99659 * 15 13 12 17 17 H 1.08001 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00214 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00022 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47316 * 60.00159 * 20 18 16 22 22 H 1.48503 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47108 * 300.00044 * 20 18 16 24 24 C 1.50696 * 109.47226 * 85.00243 * 13 12 10 25 25 C 1.38232 * 120.00207 * 39.72661 * 24 13 12 26 26 C 1.38237 * 120.00415 * 179.81572 * 25 24 13 27 27 C 1.38239 * 119.99277 * 0.38823 * 26 25 24 28 28 C 1.38232 * 120.00347 * 359.86052 * 27 26 25 29 29 C 1.38231 * 119.99992 * 359.95513 * 28 27 26 30 30 H 1.08996 * 109.47117 * 270.17721 * 1 2 3 31 31 H 1.09007 * 109.46733 * 30.17017 * 1 2 3 32 32 H 1.08996 * 109.47764 * 150.16738 * 1 2 3 33 33 H 1.08003 * 125.57331 * 179.97438 * 5 4 3 34 34 H 0.97008 * 120.00302 * 180.02562 * 7 6 5 35 35 H 0.96995 * 120.00015 * 359.72361 * 12 10 8 36 36 H 1.08999 * 109.47427 * 185.00341 * 15 13 12 37 37 H 1.09010 * 109.47093 * 305.00188 * 15 13 12 38 38 H 0.96991 * 120.00183 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.99607 * 359.97438 * 25 24 13 40 40 H 1.07995 * 120.00013 * 180.22954 * 26 25 24 41 41 H 1.08003 * 119.99238 * 179.83680 * 27 26 25 42 42 H 1.08000 * 119.99501 * 179.97438 * 28 27 26 43 43 H 1.08002 * 119.99670 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3065 1.1225 0.0000 4 7 3.5261 0.7108 -0.0057 5 6 3.5577 -0.6213 -0.0039 6 6 2.2824 -1.0909 0.0028 7 7 1.8876 -2.4265 0.0071 8 6 2.8158 -3.4037 0.0052 9 8 3.9961 -3.1196 0.0002 10 6 2.3925 -4.8355 0.0093 11 8 1.2126 -5.1195 0.0148 12 7 3.3208 -5.8127 0.0069 13 6 2.9055 -7.2175 0.0114 14 1 1.9979 -7.3262 0.6053 15 6 4.0173 -8.0761 0.6176 16 6 4.2008 -7.7099 2.0679 17 1 3.5855 -6.9418 2.5128 18 6 5.1540 -8.3553 2.8267 19 7 5.9035 -9.2903 2.2847 20 14 5.3809 -7.9018 4.6245 21 1 4.1134 -8.1432 5.3597 22 1 6.4610 -8.7343 5.2125 23 1 5.7490 -6.4672 4.7305 24 6 2.6378 -7.6668 -1.4019 25 6 3.4648 -7.2497 -2.4281 26 6 3.2216 -7.6649 -3.7240 27 6 2.1466 -8.4908 -3.9948 28 6 1.3166 -8.9037 -2.9694 29 6 1.5621 -8.4916 -1.6730 30 1 -0.3633 0.0032 1.0276 31 1 -0.3633 0.8885 -0.5165 32 1 -0.3634 -0.8914 -0.5112 33 1 4.4507 -1.2287 -0.0081 34 1 0.9445 -2.6535 0.0115 35 1 4.2638 -5.5858 -0.0016 36 1 3.7465 -9.1291 0.5402 37 1 4.9479 -7.8997 0.0779 38 1 6.5739 -9.7446 2.8186 39 1 4.3024 -6.6015 -2.2169 40 1 3.8698 -7.3420 -4.5251 41 1 1.9550 -8.8130 -5.0077 42 1 0.4766 -9.5486 -3.1812 43 1 0.9134 -8.8139 -0.8719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347349167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:25 Heat of formation + Delta-G solvation = 43.346971 kcal Electronic energy + Delta-G solvation = -29168.498469 eV Core-core repulsion = 25022.613968 eV Total energy + Delta-G solvation = -4145.884501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.38551 -41.92789 -40.51652 -39.47347 -37.29654 -36.62682 -35.08787 -34.70451 -32.66487 -31.68896 -31.04666 -30.56224 -28.63204 -27.39069 -26.02953 -23.87242 -23.74038 -23.35928 -22.80472 -21.58798 -21.26022 -19.98999 -18.85970 -18.51061 -18.17904 -17.72055 -17.57700 -17.18500 -16.80274 -16.64599 -16.38128 -16.07059 -15.59562 -15.27085 -15.13054 -14.94704 -14.45389 -14.25148 -14.17801 -14.09276 -13.87729 -13.68716 -13.48392 -13.19866 -12.94204 -12.79399 -12.78311 -12.63803 -12.43794 -12.21658 -12.16956 -11.87155 -11.62395 -11.36776 -10.97946 -10.90255 -10.57135 -10.24720 -9.74651 -9.71005 -9.54119 -8.19808 -6.29722 -0.31052 0.36695 0.46901 0.54277 0.57254 1.39870 1.41827 1.42827 1.45285 1.49938 1.98982 2.34569 2.40525 2.94787 3.13393 3.21316 3.42522 3.65474 3.85975 3.93212 4.03369 4.22262 4.25976 4.29636 4.34184 4.38972 4.48142 4.62418 4.64056 4.73746 4.78649 5.01519 5.11618 5.14271 5.21765 5.38823 5.42568 5.50145 5.58748 5.62369 5.66530 5.77813 5.82797 6.13546 6.17363 6.20112 6.41077 6.80115 6.83043 7.02226 7.39573 8.90585 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.003706 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.196143 B = 7554.060745 C =10161.760585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.369 5.369 3 N -0.087 5.087 4 N -0.250 5.250 5 C -0.097 4.097 6 C 0.281 3.719 7 N -0.601 5.601 8 C 0.527 3.473 9 O -0.492 6.492 10 C 0.519 3.481 11 O -0.534 6.534 12 N -0.661 5.661 13 C 0.200 3.800 14 H 0.081 0.919 15 C 0.035 3.965 16 C -0.532 4.532 17 H 0.058 0.942 18 C 0.014 3.986 19 N -0.924 5.924 20 Si 0.950 3.050 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.101 4.101 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.124 4.124 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.202 0.798 34 H 0.439 0.561 35 H 0.416 0.584 36 H 0.014 0.986 37 H 0.011 0.989 38 H 0.264 0.736 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 10.244 -10.359 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.164 5.164 3 N -0.066 5.066 4 N -0.117 5.117 5 C -0.258 4.258 6 C 0.052 3.948 7 N -0.253 5.253 8 C 0.308 3.692 9 O -0.363 6.363 10 C 0.298 3.702 11 O -0.412 6.412 12 N -0.311 5.311 13 C 0.096 3.904 14 H 0.099 0.901 15 C -0.002 4.002 16 C -0.570 4.570 17 H 0.076 0.924 18 C -0.185 4.185 19 N -0.564 5.564 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.102 4.102 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.140 4.140 29 C -0.142 4.142 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.218 0.782 34 H 0.280 0.720 35 H 0.253 0.747 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.394 11.587 -10.304 20.490 hybrid contribution 0.327 -1.163 1.256 1.743 sum -13.067 10.424 -9.048 19.007 Atomic orbital electron populations 1.22661 0.70038 1.07627 1.06505 1.50890 1.09897 1.02785 1.52822 1.81957 0.93849 1.04951 1.25891 1.74208 1.13563 1.12019 1.11950 1.23623 0.97416 0.90531 1.14210 1.18598 0.91457 0.81496 1.03254 1.42167 1.12612 1.00089 1.70423 1.20247 0.85437 0.86614 0.76856 1.90744 1.17499 1.83038 1.45021 1.19428 0.86347 0.85508 0.78950 1.90748 1.16899 1.83576 1.50017 1.45765 1.10559 1.05589 1.69173 1.20010 0.99396 0.78760 0.92212 0.90059 1.19171 0.92284 0.94165 0.94616 1.21403 1.18821 1.20629 0.96194 0.92400 1.25719 0.95578 0.94876 1.02363 1.70045 1.22792 1.25529 1.38046 0.85723 0.77863 0.78345 0.80475 1.19540 1.21082 1.19651 1.20317 0.96178 0.98648 0.95025 1.21083 0.99137 1.00676 0.93325 1.21408 0.98462 0.98271 0.96271 1.21479 0.94913 0.97773 1.00273 1.21410 1.00440 1.00044 0.92090 1.21192 0.96968 0.98028 0.98033 0.87527 0.86174 0.86683 0.78159 0.71963 0.74687 0.96779 0.97066 0.92741 0.86593 0.84073 0.83313 0.83616 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 11.39 127.77 1.46 1.99 16 2 N -0.37 -7.15 4.09 -365.94 -1.50 -8.64 16 3 N -0.09 -2.29 13.81 37.02 0.51 -1.78 16 4 N -0.25 -7.45 12.31 -58.22 -0.72 -8.17 16 5 C -0.10 -2.71 10.76 83.93 0.90 -1.81 16 6 C 0.28 6.43 7.75 131.00 1.02 7.45 16 7 N -0.60 -12.23 5.41 -309.41 -1.67 -13.91 16 8 C 0.53 13.95 7.85 87.23 0.68 14.64 16 9 O -0.49 -14.87 13.64 -3.39 -0.05 -14.91 16 10 C 0.52 15.70 7.84 87.23 0.68 16.38 16 11 O -0.53 -17.12 16.14 -3.28 -0.05 -17.17 16 12 N -0.66 -22.29 4.01 -447.58 -1.80 -24.09 16 13 C 0.20 7.53 2.12 44.25 0.09 7.62 16 14 H 0.08 3.23 7.44 -2.39 -0.02 3.21 16 15 C 0.04 1.64 4.50 29.85 0.13 1.77 16 16 C -0.53 -27.47 8.84 25.60 0.23 -27.24 16 17 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.01 0.74 5.46 84.65 0.46 1.20 16 19 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 20 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C -0.10 -3.37 4.91 -19.87 -0.10 -3.47 16 25 C -0.12 -3.78 9.33 22.27 0.21 -3.57 16 26 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 27 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 28 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 29 C -0.12 -3.74 9.67 22.27 0.22 -3.52 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.11 0.32 7.65 -2.39 -0.02 0.31 16 33 H 0.20 5.85 5.83 -2.91 -0.02 5.83 16 34 H 0.44 6.47 7.63 -92.70 -0.71 5.76 16 35 H 0.42 14.05 8.07 -92.71 -0.75 13.30 16 36 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.26 14.37 8.31 -92.72 -0.77 13.60 16 39 H 0.12 3.47 7.71 -2.91 -0.02 3.45 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.12 3.55 8.04 -2.91 -0.02 3.52 16 Total: -1.00 -69.12 379.25 3.32 -65.80 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.37 Total: 27.69 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.66 Total: 3.12 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -4.89 Total: -109.07 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.10 Total: -32.09 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -69.12 3.32 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347349167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.148 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds