Wall clock time and date at job start Wed Apr 1 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33358 * 117.94803 * 2 1 4 4 O 1.21284 * 118.24116 * 357.75980 * 3 2 1 5 5 C 1.50173 * 123.50966 * 177.77722 * 3 2 1 6 6 C 1.53374 * 109.99040 * 17.55007 * 5 3 2 7 7 C 1.53345 * 108.27540 * 311.25815 * 6 5 3 8 8 C 1.45751 * 117.94589 * 180.02562 * 2 1 3 9 9 H 1.08999 * 109.13694 * 78.86845 * 8 2 1 10 10 C 1.50699 * 109.30101 * 319.38124 * 8 2 1 11 11 O 1.21283 * 119.99960 * 338.96906 * 10 8 2 12 12 N 1.34777 * 120.00172 * 158.96316 * 10 8 2 13 13 C 1.46495 * 120.00260 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47240 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.46988 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99681 * 180.02562 * 15 14 13 17 17 O 1.21278 * 119.99859 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99553 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.46802 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00171 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99666 * 359.97438 * 20 19 18 22 22 C 1.38788 * 120.00229 * 179.97438 * 20 19 18 23 23 N 1.31636 * 120.00263 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 120.00194 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47216 * 89.99799 * 24 22 20 26 26 H 1.48495 * 109.46983 * 210.00004 * 24 22 20 27 27 H 1.48504 * 109.46562 * 330.00051 * 24 22 20 28 28 H 1.08994 * 109.46866 * 269.97811 * 1 2 3 29 29 H 1.08998 * 109.47017 * 29.97715 * 1 2 3 30 30 H 1.09005 * 109.47018 * 149.97247 * 1 2 3 31 31 H 1.08996 * 109.39847 * 137.71704 * 5 3 2 32 32 H 1.09002 * 109.39850 * 257.54299 * 5 3 2 33 33 H 1.08993 * 109.91371 * 191.46856 * 6 5 3 34 34 H 1.08998 * 109.58066 * 70.84511 * 6 5 3 35 35 H 1.09002 * 109.60400 * 307.57080 * 7 6 5 36 36 H 1.08997 * 109.60192 * 187.24937 * 7 6 5 37 37 H 0.97003 * 119.99915 * 0.02562 * 12 10 8 38 38 H 1.09004 * 109.46905 * 299.99913 * 13 12 10 39 39 H 1.08998 * 109.47391 * 59.99760 * 13 12 10 40 40 H 1.08994 * 109.46782 * 299.99520 * 14 13 12 41 41 H 1.08999 * 109.47093 * 59.99928 * 14 13 12 42 42 H 0.97003 * 120.00077 * 359.97438 * 15 14 13 43 43 H 1.09004 * 109.47166 * 299.99317 * 18 16 15 44 44 H 1.08999 * 109.47257 * 59.99884 * 18 16 15 45 45 H 0.96997 * 120.00239 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0900 1.1780 0.0000 4 8 1.4159 2.1854 -0.0418 5 6 3.5839 1.3240 0.0486 6 6 4.2530 -0.0004 -0.3393 7 6 3.5949 -1.1261 0.4676 8 6 2.1481 -1.2875 -0.0006 9 1 2.1399 -1.6959 -1.0111 10 6 1.4278 -2.2339 0.9249 11 8 0.7038 -1.7979 1.7948 12 7 1.5880 -3.5649 0.7860 13 6 0.8874 -4.4849 1.6853 14 6 1.2403 -5.9271 1.3157 15 7 0.5402 -6.8471 2.2155 16 6 0.7013 -8.1780 2.0772 17 8 1.4256 -8.6140 1.2076 18 6 -0.0194 -9.1244 3.0025 19 16 0.3982 -10.8304 2.5654 20 6 -0.5523 -11.6964 3.7701 21 1 -1.1514 -11.1476 4.4816 22 6 -0.5312 -13.0837 3.8045 23 7 -1.2409 -13.7307 4.7048 24 14 0.5056 -14.0330 2.5742 25 1 1.8651 -14.2460 3.1325 26 1 -0.1292 -15.3475 2.3019 27 1 0.6052 -13.2599 1.3102 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 3.8942 2.1035 -0.6472 32 1 3.8882 1.5982 1.0587 33 1 5.3179 0.0408 -0.1108 34 1 4.1126 -0.1823 -1.4048 35 1 3.6102 -0.8732 1.5278 36 1 4.1377 -2.0574 0.3060 37 1 2.1673 -3.9137 0.0904 38 1 1.1908 -4.2891 2.7138 39 1 -0.1884 -4.3378 1.5897 40 1 0.9372 -6.1231 0.2873 41 1 2.3161 -6.0739 1.4118 42 1 -0.0388 -6.4983 2.9113 43 1 0.2834 -8.9280 4.0310 44 1 -1.0952 -8.9779 2.9061 45 1 -1.2264 -14.7003 4.7287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348499765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:28 Heat of formation + Delta-G solvation = -139.458337 kcal Electronic energy + Delta-G solvation = -26524.455884 eV Core-core repulsion = 22473.795551 eV Total energy + Delta-G solvation = -4050.660333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06668 -40.75565 -40.31732 -37.51522 -36.90965 -35.26351 -34.83760 -34.66057 -32.03765 -31.05808 -29.09336 -28.15009 -27.83347 -26.10427 -23.78723 -23.25768 -22.24523 -21.54512 -19.95721 -19.70351 -18.76674 -18.02795 -17.68210 -17.57957 -17.21218 -17.07507 -16.98190 -16.59604 -16.25875 -16.16098 -15.55851 -15.45221 -15.22183 -14.98608 -14.91866 -14.64560 -14.44463 -14.41168 -13.80596 -13.56026 -13.33421 -13.25087 -13.02838 -12.99751 -12.89827 -12.81817 -12.62356 -12.58139 -11.99836 -11.86014 -11.83677 -11.37717 -11.16182 -11.07462 -10.73183 -10.53247 -10.29596 -10.15271 -9.80205 -8.98316 -8.50607 -6.21594 0.98641 1.32794 1.34819 1.42484 1.48635 1.55131 1.55924 1.76740 2.02455 2.25652 2.47237 2.73933 2.87784 3.44399 3.52927 3.61738 3.66576 3.84038 3.91506 4.01641 4.04099 4.20410 4.25255 4.28450 4.40959 4.49771 4.52659 4.56462 4.76897 4.82639 4.83651 4.85292 4.89844 4.95550 5.03800 5.20950 5.24528 5.29497 5.37690 5.71239 6.12425 6.25985 6.38926 6.44590 6.94463 7.01137 7.11034 7.15593 8.61722 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.037263 B = 0.001518 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.243795 B =18444.442319 C =18891.487655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.591 5.591 3 C 0.509 3.491 4 O -0.603 6.603 5 C -0.133 4.133 6 C -0.112 4.112 7 C -0.127 4.127 8 C 0.127 3.873 9 H 0.135 0.865 10 C 0.505 3.495 11 O -0.567 6.567 12 N -0.706 5.706 13 C 0.119 3.881 14 C 0.115 3.885 15 N -0.713 5.713 16 C 0.540 3.460 17 O -0.558 6.558 18 C -0.114 4.114 19 S -0.173 6.173 20 C -0.531 4.531 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.918 5.918 24 Si 0.916 3.084 25 H -0.262 1.262 26 H -0.261 1.261 27 H -0.234 1.234 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.422 0.578 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.418 0.582 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.685 28.725 -12.717 33.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.322 5.322 3 C 0.299 3.701 4 O -0.485 6.485 5 C -0.173 4.173 6 C -0.150 4.150 7 C -0.165 4.165 8 C 0.020 3.980 9 H 0.152 0.848 10 C 0.291 3.709 11 O -0.445 6.445 12 N -0.360 5.360 13 C -0.006 4.006 14 C -0.009 4.009 15 N -0.367 5.367 16 C 0.325 3.675 17 O -0.436 6.436 18 C -0.265 4.265 19 S 0.054 5.946 20 C -0.679 4.679 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.556 5.556 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.185 1.185 27 H -0.158 1.158 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.260 0.740 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.255 0.745 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.973 28.667 -13.475 34.230 hybrid contribution -1.325 -0.292 1.353 1.916 sum 11.648 28.375 -12.122 32.981 Atomic orbital electron populations 1.21642 0.79824 1.02637 1.01857 1.47078 1.07572 1.05634 1.71932 1.21016 0.92697 0.81810 0.74544 1.90704 1.68011 1.37138 1.52665 1.21806 0.87724 1.01956 1.05786 1.21730 1.01395 0.90669 1.01158 1.21978 0.90485 1.03095 1.00920 1.21286 0.93762 0.82172 1.00743 0.84761 1.21118 0.81556 0.83306 0.84933 1.90765 1.39892 1.77669 1.36138 1.45589 1.49224 1.04822 1.36395 1.21289 0.97904 0.86677 0.94683 1.21419 0.98048 0.86910 0.94489 1.45516 1.50012 1.04284 1.36914 1.19833 0.80773 0.83145 0.83712 1.90698 1.39430 1.77711 1.35723 1.23287 1.04736 0.95444 1.03071 1.84650 1.63911 0.99763 1.46277 1.22484 1.32082 0.94949 1.18350 0.92047 1.25592 0.95813 0.97704 0.96975 1.70024 1.40870 1.09356 1.35332 0.85848 0.79502 0.79624 0.81278 1.18661 1.18525 1.15818 0.93295 0.91667 0.90169 0.87145 0.87578 0.87287 0.89317 0.91525 0.85592 0.74008 0.90641 0.90737 0.90498 0.90293 0.74505 0.86792 0.86806 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.50 8.71 127.77 1.11 2.61 16 2 N -0.59 -8.90 2.96 -831.52 -2.46 -11.36 16 3 C 0.51 9.09 7.47 87.71 0.66 9.74 16 4 O -0.60 -16.70 16.18 -3.04 -0.05 -16.75 16 5 C -0.13 -1.07 6.04 29.81 0.18 -0.89 16 6 C -0.11 -0.11 6.06 30.84 0.19 0.08 16 7 C -0.13 -0.31 5.27 30.68 0.16 -0.15 16 8 C 0.13 0.89 3.08 44.36 0.14 1.03 16 9 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 10 C 0.51 5.97 6.29 87.66 0.55 6.52 16 11 O -0.57 -12.26 14.40 -3.04 -0.04 -12.30 16 12 N -0.71 -4.78 5.56 -463.06 -2.57 -7.35 16 13 C 0.12 1.19 5.79 86.38 0.50 1.69 16 14 C 0.12 1.50 5.79 86.38 0.50 2.00 16 15 N -0.71 -13.11 5.56 -463.06 -2.57 -15.68 16 16 C 0.54 16.17 7.85 87.66 0.69 16.86 16 17 O -0.56 -21.10 15.86 -3.02 -0.05 -21.15 16 18 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 19 S -0.17 -8.33 18.55 -56.49 -1.05 -9.37 16 20 C -0.53 -30.20 10.04 67.95 0.68 -29.52 16 21 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 22 C 0.04 2.56 5.50 84.85 0.47 3.03 16 23 N -0.92 -55.17 13.97 21.65 0.30 -54.87 16 24 Si 0.92 43.86 27.74 68.60 1.90 45.76 16 25 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 28 H 0.05 1.11 6.97 -2.39 -0.02 1.10 16 29 H 0.06 1.32 7.13 -2.39 -0.02 1.31 16 30 H 0.08 1.10 7.75 -2.38 -0.02 1.08 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.09 -0.07 8.13 -2.39 -0.02 -0.09 16 35 H 0.07 0.42 8.10 -2.39 -0.02 0.40 16 36 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.42 0.16 8.47 -92.71 -0.79 -0.63 16 38 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.42 5.45 8.47 -92.71 -0.79 4.66 16 43 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.11 3.62 8.14 -2.40 -0.02 3.61 16 45 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -87.87 386.69 -0.92 -88.79 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -0.59 Total: 4.80 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 6.26 Total: 9.48 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -7.30 Total: -89.26 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.14 Total: -50.20 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.76 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.05 Total: -9.37 kcal Total: -87.87 -0.92 -88.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348499765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.669 kcal (2) G-P(sol) polarization free energy of solvation -87.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds