Wall clock time and date at job start Wed Apr 1 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 119.99658 * 2 1 4 4 C 1.34779 * 119.99972 * 180.02562 * 2 1 3 5 5 O 1.21274 * 119.99812 * 359.97438 * 4 2 1 6 6 C 1.50697 * 119.99711 * 179.97438 * 4 2 1 7 7 C 1.50693 * 109.47165 * 180.02562 * 6 4 2 8 8 O 1.21281 * 119.99835 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00109 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99831 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.85420 * 23.80069 * 10 9 7 12 12 C 1.53781 * 113.61405 * 154.99784 * 10 9 7 13 13 C 1.53786 * 87.17350 * 140.02258 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 N 1.46501 * 113.61366 * 220.06429 * 13 12 10 16 16 C 1.34773 * 120.00122 * 204.99908 * 15 13 12 17 17 O 1.21289 * 119.99571 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00316 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47243 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00021 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99984 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00105 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99869 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47146 * 89.99733 * 24 22 20 26 26 H 1.48494 * 109.46739 * 209.99588 * 24 22 20 27 27 H 1.48498 * 109.46627 * 329.99593 * 24 22 20 28 28 C 1.53782 * 113.68817 * 252.53351 * 10 9 7 29 29 H 1.09001 * 109.46867 * 269.99724 * 1 2 3 30 30 H 1.08993 * 109.47283 * 29.99408 * 1 2 3 31 31 H 1.08999 * 109.47055 * 149.99986 * 1 2 3 32 32 H 1.08994 * 109.47196 * 270.00170 * 3 2 1 33 33 H 1.08999 * 109.47176 * 30.00799 * 3 2 1 34 34 H 1.09000 * 109.46726 * 150.00421 * 3 2 1 35 35 H 1.09001 * 109.47164 * 59.99945 * 6 4 2 36 36 H 1.09005 * 109.47203 * 300.00102 * 6 4 2 37 37 H 0.96990 * 120.00286 * 359.97438 * 9 7 6 38 38 H 1.09002 * 113.61445 * 254.61257 * 12 10 9 39 39 H 1.09002 * 113.61408 * 25.42988 * 12 10 9 40 40 H 0.97002 * 119.99797 * 24.99368 * 15 13 12 41 41 H 1.09002 * 109.47503 * 300.00170 * 18 16 15 42 42 H 1.09005 * 109.47302 * 60.00162 * 18 16 15 43 43 H 0.97001 * 119.99853 * 179.97438 * 23 22 20 44 44 H 1.08997 * 113.61668 * 334.55345 * 28 10 9 45 45 H 1.08998 * 113.61674 * 105.37854 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1483 -2.5879 -0.0023 8 8 3.3602 -3.5097 -0.0021 9 7 5.4734 -2.8341 -0.0024 10 6 5.9617 -4.2154 -0.0030 11 1 5.2364 -4.9207 -0.4085 12 6 7.3710 -4.3702 -0.5986 13 6 7.6514 -5.3832 0.5240 14 1 7.3889 -6.4083 0.2627 15 7 8.9946 -5.2670 1.0973 16 6 9.5689 -6.3325 1.6899 17 8 8.9735 -7.3875 1.7490 18 6 10.9507 -6.2131 2.2791 19 16 11.4399 -7.8011 2.9969 20 6 13.0442 -7.3853 3.5952 21 1 13.4295 -6.3858 3.4576 22 6 13.8131 -8.3425 4.2425 23 7 13.3437 -9.5608 4.4097 24 14 15.5137 -7.9015 4.8774 25 1 15.4073 -7.4027 6.2721 26 1 16.3810 -9.1064 4.8474 27 1 16.1044 -6.8447 4.0174 28 6 6.5663 -4.6575 1.3402 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3791 1.5835 -1.0276 33 1 1.6085 2.0284 0.5139 34 1 3.1499 1.1384 0.5138 35 1 4.0096 -0.6535 0.8888 36 1 4.0089 -0.6531 -0.8911 37 1 6.1037 -2.0969 -0.0022 38 1 7.3776 -4.8106 -1.5957 39 1 7.9753 -3.4656 -0.5314 40 1 9.4706 -4.4231 1.0503 41 1 11.6567 -5.9349 1.4965 42 1 10.9497 -5.4486 3.0560 43 1 13.8812 -10.2299 4.8618 44 1 6.9511 -3.8318 1.9387 45 1 5.9227 -5.3286 1.9089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353716939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:04 Heat of formation + Delta-G solvation = -111.928161 kcal Electronic energy + Delta-G solvation = -26136.262589 eV Core-core repulsion = 22086.796054 eV Total energy + Delta-G solvation = -4049.466535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60389 -40.99016 -39.98622 -38.80820 -36.46772 -35.21235 -34.57208 -33.78352 -31.86057 -30.56622 -28.62413 -27.67193 -26.82523 -26.72525 -25.05211 -22.17316 -21.56981 -21.24573 -20.13003 -19.73976 -18.56615 -18.03165 -17.68023 -17.29119 -17.20250 -16.86894 -16.80965 -16.42391 -16.27983 -15.97500 -15.74606 -15.50980 -14.72836 -14.52924 -14.40297 -14.21876 -14.15776 -13.89684 -13.47893 -13.43386 -13.37789 -13.34286 -13.15266 -12.90289 -12.87901 -12.80245 -12.65890 -12.31853 -12.28427 -11.93617 -11.70177 -11.13131 -11.11105 -10.90432 -10.49177 -10.25105 -10.12475 -9.90155 -9.63175 -8.65752 -8.33385 -6.11718 1.28367 1.43696 1.48650 1.58445 1.60052 1.62858 1.72944 1.81676 2.25543 2.29650 2.54561 3.00971 3.33756 3.40683 3.45154 3.57665 3.88030 3.89130 3.94355 4.03131 4.26106 4.34198 4.36874 4.45320 4.47845 4.52009 4.53172 4.64583 4.69729 4.73531 4.85033 4.90584 4.92039 5.02046 5.02967 5.11526 5.42950 5.49867 5.54781 5.63549 6.20945 6.35779 6.55879 6.65397 7.07895 7.21387 7.29662 7.42087 8.75863 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.001457 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.325907 B =19207.998041 C =19539.487030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.626 5.626 3 C 0.067 3.933 4 C 0.495 3.505 5 O -0.563 6.563 6 C -0.150 4.150 7 C 0.503 3.497 8 O -0.561 6.561 9 N -0.700 5.700 10 C 0.130 3.870 11 H 0.090 0.910 12 C -0.121 4.121 13 C 0.115 3.885 14 H 0.088 0.912 15 N -0.696 5.696 16 C 0.532 3.468 17 O -0.570 6.570 18 C -0.128 4.128 19 S -0.159 6.159 20 C -0.545 4.545 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.256 1.256 28 C -0.162 4.162 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.422 0.578 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.420 0.580 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.270 0.730 44 H 0.108 0.892 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.160 33.102 -12.850 39.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.361 5.361 3 C -0.075 4.075 4 C 0.283 3.717 5 O -0.440 6.440 6 C -0.191 4.191 7 C 0.289 3.711 8 O -0.437 6.437 9 N -0.354 5.354 10 C 0.023 3.977 11 H 0.109 0.891 12 C -0.160 4.160 13 C 0.009 3.991 14 H 0.106 0.894 15 N -0.349 5.349 16 C 0.318 3.682 17 O -0.448 6.448 18 C -0.279 4.279 19 S 0.068 5.932 20 C -0.693 4.693 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.180 1.180 28 C -0.202 4.202 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.261 0.739 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.258 0.742 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.079 0.921 44 H 0.126 0.874 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.032 30.016 -12.714 37.747 hybrid contribution 1.636 1.119 0.588 2.067 sum -17.396 31.136 -12.126 37.671 Atomic orbital electron populations 1.21673 0.79269 1.03184 1.01949 1.47965 1.07468 1.07009 1.73620 1.22188 0.98165 0.83459 1.03649 1.20825 0.91003 0.83355 0.76520 1.90861 1.70882 1.32773 1.49497 1.21688 0.92017 0.95134 1.10299 1.20803 0.82690 0.91803 0.75843 1.90879 1.56232 1.47726 1.48902 1.45676 1.06402 1.08236 1.75070 1.21982 0.95014 0.84457 0.96238 0.89146 1.23632 0.94191 0.99922 0.98229 1.22280 0.81357 1.00045 0.95419 0.89371 1.45598 1.17536 1.13425 1.58345 1.20167 0.86912 0.83825 0.77253 1.90705 1.65276 1.30245 1.58562 1.23371 0.96670 1.03576 1.04299 1.85670 1.20534 1.13241 1.73718 1.23216 1.01759 1.00807 1.43509 0.89689 1.26147 1.03574 0.94143 0.95348 1.70197 1.39461 1.04118 1.41159 0.84940 0.76064 0.78133 0.78755 1.19359 1.20464 1.17963 1.24021 0.97364 1.00832 0.97972 0.92781 0.88172 0.93379 0.90764 0.89534 0.88540 0.82029 0.81771 0.73901 0.89109 0.85236 0.74155 0.86876 0.87009 0.92061 0.87369 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.44 127.77 1.33 2.20 16 2 N -0.63 -6.34 3.27 -871.89 -2.85 -9.20 16 3 C 0.07 -0.05 10.24 127.77 1.31 1.26 16 4 C 0.50 8.70 7.67 87.66 0.67 9.37 16 5 O -0.56 -17.80 13.76 20.43 0.28 -17.52 16 6 C -0.15 -1.08 4.74 29.10 0.14 -0.94 16 7 C 0.50 8.82 7.82 87.65 0.69 9.50 16 8 O -0.56 -18.07 13.78 20.41 0.28 -17.79 16 9 N -0.70 -7.28 5.36 -440.03 -2.36 -9.63 16 10 C 0.13 2.06 4.24 45.52 0.19 2.26 16 11 H 0.09 2.04 7.46 -2.39 -0.02 2.02 16 12 C -0.12 -1.34 7.58 31.12 0.24 -1.11 16 13 C 0.12 2.40 4.25 45.58 0.19 2.59 16 14 H 0.09 2.45 7.47 -2.39 -0.02 2.43 16 15 N -0.70 -15.60 5.36 -439.75 -2.36 -17.95 16 16 C 0.53 19.05 7.85 87.65 0.69 19.74 16 17 O -0.57 -26.65 15.46 -3.06 -0.05 -26.69 16 18 C -0.13 -4.88 6.16 71.23 0.44 -4.44 16 19 S -0.16 -8.80 20.57 -56.49 -1.16 -9.96 16 20 C -0.55 -30.85 9.50 67.95 0.65 -30.20 16 21 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.71 5.49 84.86 0.47 1.17 16 23 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 24 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 28 C -0.16 -3.12 7.69 31.18 0.24 -2.88 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.39 8.07 -2.39 -0.02 0.37 16 31 H 0.05 0.80 7.42 -2.39 -0.02 0.78 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.09 -0.24 8.07 -2.39 -0.02 -0.26 16 34 H 0.10 -0.51 6.44 -2.39 -0.02 -0.52 16 35 H 0.16 -0.14 7.40 -2.39 -0.02 -0.16 16 36 H 0.16 -0.25 8.11 -2.38 -0.02 -0.27 16 37 H 0.42 0.39 8.73 -92.72 -0.81 -0.42 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.13 0.49 8.09 -2.39 -0.02 0.47 16 40 H 0.42 5.74 8.73 -92.71 -0.81 4.93 16 41 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 42 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -102.76 394.42 0.74 -102.02 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.59 Total: 9.00 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 7.24 Total: 8.52 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -7.28 Total: -92.78 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: 0.52 Total: -62.00 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -102.76 0.74 -102.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353716939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.908 kcal (2) G-P(sol) polarization free energy of solvation -102.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds