Wall clock time and date at job start Wed Apr 1 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00078 * 2 1 4 4 C 1.52998 * 109.47120 * 89.99930 * 3 2 1 5 5 N 1.46498 * 109.47120 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00160 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00043 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99956 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46916 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.21554 * 306.93150 * 9 8 6 11 11 C 1.54479 * 110.24549 * 185.00235 * 9 8 6 12 12 C 1.54623 * 101.76448 * 266.41353 * 11 9 8 13 13 C 1.51286 * 104.19583 * 335.20040 * 12 11 9 14 14 O 1.21283 * 124.94068 * 196.22850 * 13 12 11 15 15 N 1.34417 * 110.11517 * 16.49747 * 13 12 11 16 16 C 1.34781 * 119.99676 * 179.97438 * 2 1 3 17 17 O 1.21286 * 119.99544 * 180.02562 * 16 2 1 18 18 C 1.50695 * 120.00140 * 0.02562 * 16 2 1 19 19 S 1.81006 * 109.46821 * 179.97438 * 18 16 2 20 20 C 1.76209 * 99.99743 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99985 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00092 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00009 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00239 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47236 * 59.99917 * 24 22 20 26 26 H 1.48504 * 109.46987 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47054 * 299.99704 * 24 22 20 28 28 H 1.09007 * 109.47232 * 90.00501 * 1 2 3 29 29 H 1.09000 * 109.47669 * 210.00113 * 1 2 3 30 30 H 1.09001 * 109.47136 * 330.00278 * 1 2 3 31 31 H 1.09000 * 109.46948 * 329.99808 * 3 2 1 32 32 H 1.09009 * 109.47019 * 209.99885 * 3 2 1 33 33 H 1.09000 * 109.47310 * 60.00099 * 4 3 2 34 34 H 1.08997 * 109.46910 * 299.99494 * 4 3 2 35 35 H 0.96997 * 119.99981 * 359.97438 * 5 4 3 36 36 H 1.09000 * 109.46933 * 60.00569 * 8 6 5 37 37 H 1.08997 * 109.47035 * 300.00119 * 8 6 5 38 38 H 1.09006 * 110.97141 * 148.29400 * 11 9 8 39 39 H 1.09002 * 110.97085 * 24.53434 * 11 9 8 40 40 H 1.09000 * 110.48720 * 216.52574 * 12 11 9 41 41 H 1.09003 * 110.60041 * 93.93250 * 12 11 9 42 42 H 0.96995 * 124.34982 * 180.16393 * 15 13 12 43 43 H 1.08992 * 109.47232 * 299.99871 * 18 16 2 44 44 H 1.08995 * 109.47162 * 60.00259 * 18 16 2 45 45 H 0.96996 * 120.00514 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 7 3.1855 2.9788 1.4425 6 6 3.5221 3.5626 2.6097 7 8 3.2185 3.0377 3.6600 8 6 4.2767 4.8671 2.6096 9 6 4.5315 5.3089 4.0521 10 1 3.5963 5.3255 4.6118 11 6 5.1930 6.7047 4.0747 12 6 6.6948 6.3411 4.1307 13 6 6.7195 4.9605 4.7489 14 8 7.7013 4.4290 5.2227 15 7 5.4962 4.4064 4.6915 16 6 2.1388 -1.1673 0.0005 17 8 3.3516 -1.1672 0.0010 18 6 1.3853 -2.4723 0.0005 19 16 2.5615 -3.8481 0.0005 20 6 1.4413 -5.2083 -0.0003 21 1 0.3761 -5.0305 -0.0001 22 6 1.9280 -6.5081 0.0001 23 7 3.2264 -6.7248 0.0004 24 14 0.7406 -7.9501 0.0000 25 1 -0.1142 -7.8874 -1.2127 26 1 1.5067 -9.2222 -0.0003 27 1 -0.1148 -7.8870 1.2123 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1499 1.1383 -0.5139 33 1 3.0415 0.9508 1.9563 34 1 1.5000 1.8408 1.9562 35 1 3.4286 3.3984 0.6025 36 1 3.6885 5.6270 2.0951 37 1 5.2293 4.7358 2.0965 38 1 4.8937 7.2639 4.9613 39 1 4.9600 7.2616 3.1672 40 1 7.2358 7.0496 4.7579 41 1 7.1213 6.3176 3.1279 42 1 5.2784 3.5243 5.0313 43 1 0.7583 -2.5299 0.8902 44 1 0.7590 -2.5303 -0.8897 45 1 3.5666 -7.6331 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355745673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:21 Heat of formation + Delta-G solvation = -143.967511 kcal Electronic energy + Delta-G solvation = -26585.622047 eV Core-core repulsion = 22534.766181 eV Total energy + Delta-G solvation = -4050.855866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63346 -40.98042 -40.29634 -37.73495 -37.10260 -35.62334 -34.60239 -32.50698 -32.09840 -31.41980 -29.52796 -27.71497 -27.53533 -26.44055 -24.06499 -22.28383 -21.67745 -21.29463 -20.59079 -19.56293 -18.57085 -18.19467 -17.99344 -17.57534 -16.97118 -16.89732 -16.78743 -16.75493 -16.22582 -15.97336 -15.73930 -15.15791 -14.95138 -14.70785 -14.45470 -14.34828 -14.30919 -14.12656 -13.75737 -13.59008 -13.41166 -13.25887 -13.18468 -13.04640 -12.88178 -12.86896 -12.66095 -12.36434 -12.16884 -11.80294 -11.75363 -11.14412 -11.09032 -10.96445 -10.87327 -10.29385 -10.18118 -10.16519 -9.80218 -8.70030 -8.36151 -6.15173 1.22439 1.42681 1.42772 1.50031 1.53874 1.56228 1.63943 1.89693 2.25768 2.42953 2.45299 2.97888 3.24382 3.42416 3.58865 3.67604 3.76592 3.82066 4.01215 4.02183 4.16714 4.19429 4.31272 4.36370 4.43041 4.46115 4.52026 4.65915 4.69713 4.74583 4.85907 4.90034 4.96083 4.97896 5.14076 5.22189 5.31511 5.39512 5.53955 5.83582 6.10504 6.17043 6.19292 6.52503 7.04703 7.08432 7.20334 7.26161 8.72845 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.001798 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.108464 B =15567.356369 C =16590.994111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.609 5.609 3 C 0.112 3.888 4 C 0.112 3.888 5 N -0.714 5.714 6 C 0.504 3.496 7 O -0.588 6.588 8 C -0.145 4.145 9 C 0.136 3.864 10 H 0.095 0.905 11 C -0.110 4.110 12 C -0.149 4.149 13 C 0.498 3.502 14 O -0.603 6.603 15 N -0.725 5.725 16 C 0.529 3.471 17 O -0.563 6.563 18 C -0.124 4.124 19 S -0.158 6.158 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.259 1.259 26 H -0.280 1.280 27 H -0.262 1.262 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.420 0.580 36 H 0.158 0.842 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.402 0.598 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 34.929 -0.120 35.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.011 4.011 4 C -0.014 4.014 5 N -0.368 5.368 6 C 0.292 3.708 7 O -0.468 6.468 8 C -0.185 4.185 9 C 0.031 3.969 10 H 0.113 0.887 11 C -0.148 4.148 12 C -0.189 4.189 13 C 0.286 3.714 14 O -0.485 6.485 15 N -0.377 5.377 16 C 0.317 3.683 17 O -0.441 6.441 18 C -0.275 4.275 19 S 0.070 5.930 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.184 1.184 26 H -0.205 1.205 27 H -0.187 1.187 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.258 0.742 36 H 0.176 0.824 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.239 0.761 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.167 34.304 0.789 34.700 hybrid contribution -1.484 -2.048 0.127 2.533 sum -6.651 32.256 0.916 32.947 Atomic orbital electron populations 1.22158 0.76388 1.04832 1.03815 1.47730 1.08705 1.04339 1.73578 1.21635 0.98986 0.85426 0.95081 1.21470 0.96412 0.85416 0.98055 1.45738 1.58096 1.23226 1.09731 1.21497 0.78651 0.87708 0.82948 1.90715 1.56485 1.66663 1.32974 1.22308 1.02645 0.94376 0.99161 1.21693 0.93208 0.89852 0.92145 0.88738 1.22753 0.91234 0.93848 1.06952 1.22424 1.00345 0.92028 1.04113 1.22001 0.81971 0.90102 0.77318 1.90729 1.37502 1.70453 1.49803 1.46673 1.10610 1.20235 1.60178 1.20210 0.87295 0.85697 0.75126 1.90694 1.15725 1.87490 1.50193 1.23377 1.02701 0.94928 1.06483 1.85623 1.12837 0.97536 1.97051 1.23162 0.94626 0.92567 1.58993 0.89760 1.26164 0.97629 1.01782 0.93710 1.70185 1.14192 1.22532 1.47932 0.84988 0.77567 0.75778 0.79569 1.18386 1.20481 1.18699 0.90301 0.91042 0.87930 0.84998 0.90803 0.95863 0.90902 0.74224 0.82413 0.87075 0.88525 0.84719 0.87177 0.85749 0.76120 0.87556 0.87069 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.24 127.77 1.31 2.33 16 2 N -0.61 -14.48 2.87 -846.76 -2.43 -16.92 16 3 C 0.11 1.98 5.52 86.38 0.48 2.45 16 4 C 0.11 2.29 6.00 86.38 0.52 2.81 16 5 N -0.71 -9.60 5.56 -463.06 -2.57 -12.18 16 6 C 0.50 8.09 7.73 87.66 0.68 8.77 16 7 O -0.59 -15.51 15.10 -3.03 -0.05 -15.55 16 8 C -0.14 -0.77 5.30 29.85 0.16 -0.61 16 9 C 0.14 1.16 3.01 45.44 0.14 1.30 16 10 H 0.09 0.92 7.91 -2.39 -0.02 0.90 16 11 C -0.11 -0.15 6.70 31.65 0.21 0.06 16 12 C -0.15 -1.15 6.86 30.59 0.21 -0.94 16 13 C 0.50 10.37 8.43 87.90 0.74 11.11 16 14 O -0.60 -19.79 18.03 -3.04 -0.05 -19.85 16 15 N -0.73 -13.27 5.51 -439.44 -2.42 -15.69 16 16 C 0.53 19.47 7.69 87.65 0.67 20.14 16 17 O -0.56 -26.11 15.44 -3.05 -0.05 -26.15 16 18 C -0.12 -4.92 4.71 71.23 0.34 -4.58 16 19 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 20 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 24 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 28 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 1.18 6.44 -2.39 -0.02 1.17 16 30 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 31 H 0.13 1.04 8.07 -2.39 -0.02 1.02 16 32 H 0.07 1.62 7.42 -2.38 -0.02 1.60 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.42 2.30 8.47 -92.71 -0.79 1.51 16 36 H 0.16 -0.64 8.09 -2.39 -0.02 -0.66 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 0.04 8.14 -2.38 -0.02 0.02 16 39 H 0.13 -0.80 7.86 -2.39 -0.02 -0.82 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.40 9.50 8.35 -92.71 -0.77 8.73 16 43 H 0.11 3.86 7.40 -2.40 -0.02 3.84 16 44 H 0.11 3.92 8.11 -2.40 -0.02 3.90 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -98.77 393.67 -0.40 -99.17 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -0.53 Total: 14.57 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 6.56 Total: 13.28 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -7.14 Total: -101.25 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -0.15 Total: -61.55 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -98.77 -0.40 -99.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355745673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.799 kcal (2) G-P(sol) polarization free energy of solvation -98.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds