Wall clock time and date at job start Wed Apr 1 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99790 * 2 1 4 4 C 1.53003 * 109.47243 * 89.99713 * 3 2 1 5 5 C 1.53351 * 109.40564 * 295.11935 * 4 3 2 6 6 C 1.53194 * 109.14668 * 178.68362 * 5 4 3 7 7 N 1.46924 * 108.89585 * 54.57705 * 6 5 4 8 8 C 1.34773 * 120.63051 * 126.34013 * 7 6 5 9 9 O 1.21284 * 120.00010 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00016 * 180.02562 * 8 7 6 11 11 S 1.80998 * 109.47083 * 180.02562 * 10 8 7 12 12 C 1.76201 * 99.99711 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00097 * 359.97438 * 12 11 10 14 14 C 1.38803 * 119.99807 * 180.02562 * 12 11 10 15 15 N 1.31629 * 119.99713 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00022 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47046 * 89.99679 * 16 14 12 18 18 H 1.48498 * 109.47071 * 209.99705 * 16 14 12 19 19 H 1.48499 * 109.47164 * 329.99817 * 16 14 12 20 20 C 1.46921 * 118.73586 * 306.32165 * 7 6 5 21 21 C 1.53035 * 109.46066 * 174.99727 * 4 3 2 22 22 C 1.34777 * 119.99989 * 179.97438 * 2 1 3 23 23 O 1.21346 * 119.99748 * 185.52959 * 22 2 1 24 24 C 1.49450 * 119.99900 * 5.54179 * 22 2 1 25 25 N 1.34780 * 119.99945 * 185.60344 * 24 22 2 26 26 O 1.21349 * 120.00017 * 5.59948 * 24 22 2 27 27 H 1.09000 * 109.46880 * 95.71304 * 1 2 3 28 28 H 1.09000 * 109.47366 * 215.70939 * 1 2 3 29 29 H 1.08997 * 109.47155 * 335.71445 * 1 2 3 30 30 H 1.08992 * 109.47276 * 329.99399 * 3 2 1 31 31 H 1.09003 * 109.46839 * 209.99196 * 3 2 1 32 32 H 1.09000 * 109.46040 * 55.02351 * 4 3 2 33 33 H 1.09004 * 109.68398 * 58.71884 * 5 4 3 34 34 H 1.08999 * 109.47596 * 298.51777 * 5 4 3 35 35 H 1.09005 * 109.58413 * 294.71626 * 6 5 4 36 36 H 1.09003 * 109.58426 * 174.43760 * 6 5 4 37 37 H 1.09000 * 109.46512 * 300.00068 * 10 8 7 38 38 H 1.08995 * 109.46950 * 60.00031 * 10 8 7 39 39 H 0.97009 * 119.99596 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.58452 * 173.39796 * 20 7 6 41 41 H 1.09003 * 109.58982 * 293.67747 * 20 7 6 42 42 H 1.09001 * 109.49748 * 61.41834 * 21 4 3 43 43 H 1.09004 * 109.52813 * 301.34114 * 21 4 3 44 44 H 0.96997 * 119.99706 * 359.97438 * 25 24 22 45 45 H 0.96998 * 120.00136 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 6 1.1137 2.0110 2.1275 6 6 1.3736 2.4209 3.5805 7 7 2.3259 3.5396 3.5963 8 6 2.0316 4.6829 4.2464 9 8 0.9722 4.7953 4.8262 10 6 3.0186 5.8216 4.2529 11 16 2.3384 7.2043 5.2024 12 6 3.6592 8.3603 5.0483 13 1 4.5447 8.0971 4.4888 14 6 3.5620 9.6089 5.6469 15 7 2.4830 9.9293 6.3293 16 14 4.9625 10.8342 5.4842 17 1 4.7496 11.6717 4.2766 18 1 5.0028 11.7027 6.6881 19 1 6.2485 10.1023 5.3586 20 6 3.6054 3.3881 2.8902 21 6 3.3239 2.9685 1.4440 22 6 2.1389 -1.1672 0.0005 23 8 3.3481 -1.1695 0.1018 24 6 1.3969 -2.4585 -0.1239 25 7 2.0564 -3.6284 -0.0102 26 8 0.2005 -2.4537 -0.3272 27 1 -0.3633 -0.1023 -1.0226 28 1 -0.3634 -0.8344 0.5998 29 1 -0.3633 0.9367 0.4226 30 1 1.6085 2.0283 -0.5139 31 1 3.1500 1.1384 -0.5137 32 1 2.9645 0.9133 1.9813 33 1 0.4833 1.1220 2.1074 34 1 0.6123 2.8251 1.6041 35 1 1.7922 1.5769 4.1289 36 1 0.4379 2.7310 4.0457 37 1 3.9513 5.4912 4.7102 38 1 3.2097 6.1426 3.2290 39 1 2.4153 10.8018 6.7479 40 1 4.1414 4.3371 2.8976 41 1 4.2071 2.6248 3.3838 42 1 2.8018 3.7734 0.9268 43 1 4.2655 2.7601 0.9358 44 1 3.0127 -3.6322 0.1520 45 1 1.5748 -4.4665 -0.0906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356722684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:01 Heat of formation + Delta-G solvation = -100.508535 kcal Electronic energy + Delta-G solvation = -27620.165842 eV Core-core repulsion = 23571.194499 eV Total energy + Delta-G solvation = -4048.971343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25710 -39.97442 -38.88895 -37.64686 -36.15163 -34.13387 -33.15222 -32.42853 -31.61093 -29.30550 -28.31687 -27.21643 -25.51498 -24.96192 -23.34336 -22.94343 -20.95466 -20.18679 -19.06598 -18.39601 -17.75100 -17.66650 -16.82377 -16.59955 -16.39250 -15.83383 -15.59837 -15.33811 -14.83189 -14.80613 -14.73139 -14.33414 -14.01888 -13.75623 -13.66244 -13.39631 -13.28605 -13.02790 -12.90960 -12.65443 -12.28882 -12.11344 -11.88192 -11.76958 -11.41479 -11.37974 -11.06507 -11.02446 -10.88762 -10.76307 -10.61092 -10.39678 -9.91822 -9.80094 -9.34575 -9.20574 -9.06714 -8.49834 -8.22245 -6.50085 -6.21651 -3.92197 0.95662 1.98037 2.72448 2.94942 3.06323 3.19072 3.22143 3.26224 3.30335 3.60595 4.01266 4.20133 4.39825 4.44174 4.52583 4.78726 4.81260 4.97637 5.03827 5.13290 5.13646 5.15362 5.21647 5.31000 5.37453 5.48835 5.54118 5.59868 5.66436 5.68420 5.71401 5.82188 5.84110 5.89192 5.95876 6.03008 6.11719 6.17033 6.41337 6.66492 6.69060 7.25253 7.53008 7.57478 7.59865 8.35077 8.57494 9.23601 10.85722 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.029998 B = 0.001949 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.161566 B =14366.454836 C =14822.515731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.581 5.581 3 C 0.117 3.883 4 C -0.102 4.102 5 C -0.132 4.132 6 C 0.114 3.886 7 N -0.620 5.620 8 C 0.535 3.465 9 O -0.518 6.518 10 C -0.150 4.150 11 S -0.062 6.062 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.110 3.890 21 C -0.127 4.127 22 C 0.502 3.498 23 O -0.519 6.519 24 C 0.512 3.488 25 N -0.823 5.823 26 O -0.516 6.516 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.414 0.586 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -25.970 -15.612 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.314 5.314 3 C -0.005 4.005 4 C -0.121 4.121 5 C -0.170 4.170 6 C -0.009 4.009 7 N -0.356 5.356 8 C 0.323 3.677 9 O -0.393 6.393 10 C -0.301 4.301 11 S 0.165 5.835 12 C -0.683 4.683 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.014 4.014 21 C -0.166 4.166 22 C 0.284 3.716 23 O -0.396 6.396 24 C 0.291 3.709 25 N -0.389 5.389 26 O -0.392 6.392 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.244 0.756 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.310 -25.448 -14.711 29.423 hybrid contribution 2.398 0.233 -0.803 2.539 sum 1.087 -25.215 -15.514 29.625 Atomic orbital electron populations 1.22321 0.77469 1.03950 1.03395 1.47712 1.08340 1.05291 1.70012 1.21767 0.97837 0.83499 0.97363 1.21590 0.96775 0.98182 0.95592 1.22169 0.96896 1.01619 0.96331 1.21466 0.94701 0.88682 0.96050 1.48102 1.18576 1.14965 1.53976 1.20333 0.87578 0.82359 0.77425 1.90687 1.25040 1.80642 1.42895 1.23551 1.01330 0.99467 1.05733 1.85406 1.26105 1.05898 1.66097 1.22858 1.04567 1.01492 1.39387 0.90950 1.24995 0.96633 0.97475 0.94506 1.70022 1.26738 1.21715 1.31779 0.86170 0.81240 0.80242 0.77860 1.20278 1.20758 1.19693 1.21679 0.85459 1.02758 0.91497 1.21900 1.00278 0.97230 0.97200 1.20070 0.87480 0.85203 0.78836 1.90778 1.13515 1.87072 1.48196 1.20147 0.87243 0.85961 0.77508 1.43557 1.14272 1.07568 1.73530 1.90803 1.14296 1.87384 1.46712 0.91761 0.89078 0.90531 0.89545 0.89330 0.90328 0.90721 0.91157 0.92130 0.88866 0.89314 0.89281 0.92195 0.89046 0.91519 0.90945 0.90351 0.75566 0.75675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 8.10 59.85 0.48 0.95 16 2 N -0.58 -4.46 2.70 -182.08 -0.49 -4.95 16 3 C 0.12 0.84 4.83 -4.04 -0.02 0.83 16 4 C -0.10 -0.83 2.36 -90.42 -0.21 -1.04 16 5 C -0.13 -1.18 4.42 -26.45 -0.12 -1.30 16 6 C 0.11 1.36 6.42 -3.71 -0.02 1.34 16 7 N -0.62 -8.69 2.97 -172.77 -0.51 -9.21 16 8 C 0.53 10.17 7.72 -10.99 -0.08 10.08 16 9 O -0.52 -11.86 15.27 5.55 0.08 -11.78 16 10 C -0.15 -3.04 4.50 36.01 0.16 -2.88 16 11 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 12 C -0.53 -15.19 9.50 30.94 0.29 -14.89 16 13 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 16 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.11 1.18 6.34 -3.72 -0.02 1.15 16 21 C -0.13 -1.07 5.36 -26.62 -0.14 -1.22 16 22 C 0.50 4.38 7.72 -11.59 -0.09 4.29 16 23 O -0.52 -5.48 16.13 5.50 0.09 -5.39 16 24 C 0.51 3.93 7.98 -11.58 -0.09 3.84 16 25 N -0.82 -3.58 8.87 30.91 0.27 -3.30 16 26 O -0.52 -4.95 14.22 5.50 0.08 -4.88 16 27 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.09 0.68 5.99 -51.93 -0.31 0.37 16 29 H 0.08 0.43 6.22 -51.93 -0.32 0.11 16 30 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.09 0.68 7.50 -51.93 -0.39 0.29 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.58 5.90 -51.93 -0.31 0.28 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 37 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 38 H 0.09 1.66 7.69 -51.92 -0.40 1.26 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.41 1.35 8.31 -40.82 -0.34 1.01 16 45 H 0.41 0.99 8.93 -40.82 -0.36 0.62 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -36.65 378.12 -7.68 -44.33 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.44 Total: -0.70 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 0.04 Total: 3.14 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.00 Total: -42.86 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.25 Total: -22.05 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.65 -7.68 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356722684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.178 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds